Alias: ACD51_5535.29433.12
name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
ACD51_56_1
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria
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Not on your lists |
comp(2..85)
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2..85 - (rbs_motif=TAA rbs_spacer=12bp)
hypothetical protein Tax=RIFOXYC2_FULL_Peregrinibacteria_41_22_curated
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ACD51_56_2
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria
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Not on your lists |
114..860
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DSBA oxidoreductase
seg (db=Seg db_id=seg from=36 to=55)
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=34)
Thioredoxin-like (db=superfamily db_id=SSF52833 from=49 to=233 evalue=1.9e-41 interpro_id=IPR012336 interpro_description=Thioredoxin-like fold)
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ACD51_56_3
uncultured bacterium, Bacteria
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Not on your lists |
979..2349
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GTP-binding protein Obg/CgtA
seg (db=Seg db_id=seg from=273 to=286)
seg (db=Seg db_id=seg from=31 to=42)
seg (db=Seg db_id=seg from=135 to=154)
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ACD51_56_4
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria
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Not on your lists |
2346..2879
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peptidyl-tRNA hydrolase (EC:3.1.1.29)
Peptidyl-tRNA hydrolase n=1 Tax=Coprococcus sp. ART55/1 RepID=D5HIN2_9FIRM (db=UNIREF evalue=2.0e-40 bit_score=167.0 identity=47.73 coverage=97.1910112359551)
PEPT_TRNA_HYDROL_2 (db=PatternScan db_id=PS01196 from=109 to=119 evalue=0.0 interpro_id=IPR018171 interpro_description=Peptidyl-tRNA hydrolase, conserved site GO=Molecular Function: aminoacyl-tRNA hydrolase activity (GO:0004045), Biological Process: translation (GO:0006412))
PEPT_TRNA_HYDROL_1 (db=PatternScan db_id=PS01195 from=14 to=27 evalue=0.0 interpro_id=IPR018171 interpro_description=Peptidyl-tRNA hydrolase, conserved site GO=Molecular Function: aminoacyl-tRNA hydrolase activity (GO:0004045), Biological Process: translation (GO:0006412))
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ACD51_56_5
uncultured bacterium, Bacteria
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Not on your lists |
2935..3354
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rplU; 50S ribosomal protein L21
seg (db=Seg db_id=seg from=108 to=139)
Ribosomal_L21p (db=HMMPfam db_id=PF00829 from=1 to=97 evalue=1.2e-29 interpro_id=IPR001787 interpro_description=Ribosomal protein L21 GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
L21: ribosomal protein L21 (db=HMMTigr db_id=TIGR00061 from=2 to=103 evalue=2.4e-28 interpro_id=IPR001787 interpro_description=Ribosomal protein L21 GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
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ACD51_56_6
uncultured bacterium, Bacteria
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Not on your lists |
comp(3356..4267)
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pseudouridine synthase, RluA family
PSI_RLU (db=PatternScan db_id=PS01129 from=132 to=146 evalue=0.0 interpro_id=IPR006224 interpro_description=Pseudouridine synthase, RluC/RluD, conserved site GO=Biological Process: pseudouridine synthesis (GO:0001522), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA modification (GO:0009451), Molecular Function: pseudouridine synthase activity (GO:0009982))
rluA_subfam: pseudouridine synthase, RluA (db=HMMTigr db_id=TIGR00005 from=6 to=303 evalue=5.0e-92 interpro_id=IPR006225 interpro_description=Pseudouridine synthase, RluC/RluD GO=Biological Process: pseudouridine synthesis (GO:0001522), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA modification (GO:0009451), Molecular Function: pseudouridine synthase activity (GO:0009982))
Pseudouridine synthase (db=superfamily db_id=SSF55120 from=68 to=301 evalue=3.4e-68 interpro_id=IPR020103 interpro_description=Pseudouridine synthase, catalytic domain GO=Biological Process: pseudouridine synthesis (GO:0001522), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA modification (GO:0009451), Molecular Function: pseudouridine synthase activity (GO:0009982))
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ACD51_56_7
uncultured bacterium, Bacteria
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Not on your lists |
4333..5529
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tyrZ; tyrosyl-tRNA synthetase (EC:6.1.1.1)
tyrZ; tyrosyl-tRNA synthetase (EC:6.1.1.1)
Tyrosyl-tRNA synthetase n=1 Tax=Bacillus clausii KSM-K16 RepID=SYY_BACSK (db=UNIREF evalue=2.0e-113 bit_score=412.0 identity=55.71 coverage=88.9724310776942)
seg (db=Seg db_id=seg from=21 to=40)
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ACD51_56_8
uncultured bacterium, Bacteria
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Not on your lists |
5575..7302
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signal transduction histidine kinase
coiled-coil (db=Coil db_id=coil from=197 to=218 evalue=NA)
Hist_Kin_Sens (db=HMMPfam db_id=PF10114 from=17 to=182 evalue=1.5e-34 interpro_id=IPR018771 interpro_description=Transcription regulator,histidine kinase sensor, N-terminal)
SENSOR HISTIDINE KINASE-RELATED (db=HMMPanther db_id=PTHR23283 from=150 to=575 evalue=2.3e-23)
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ACD51_56_9
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria
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Not on your lists |
7337..9319
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ATP-dependent DNA helicase RecG n=1 Tax=Dehalogenimonas lykanthroporepellens BL-DC-9 RepID=D4XXC2_9CHLR (db=UNIREF evalue=6.0e-156 bit_score=555.0 identity=45.81 coverage=96.9742813918306)
ATP-dependent DNA helicase RecG
ATP-dependent DNA helicase RecG
seg (db=Seg db_id=seg from=292 to=302)
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ACD51_56_10
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria
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Not on your lists |
9483..9578
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9483..9578 + (rbs_motif=TAA rbs_spacer=12bp)
hypothetical protein Tax=RIFOXYC2_FULL_Peregrinibacteria_41_22_curated
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ACD51_56_11
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria
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Not on your lists |
comp(9772..13830)
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seg (db=Seg db_id=seg from=1230 to=1246)
seg (db=Seg db_id=seg from=340 to=357)
seg (db=Seg db_id=seg from=207 to=225)
seg (db=Seg db_id=seg from=181 to=192)
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ACD51_56_12
uncultured bacterium, Bacteria
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Not on your lists |
comp(13886..15454)
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hypothetical protein
hypothetical protein
Elongator complex protein 3, putative n=3 Tax=Toxoplasma gondii RepID=B6KR58_TOXGO (db=UNIREF evalue=1.0e-113 bit_score=414.0 identity=42.97 coverage=88.527724665392)
HISTONE ACETYLTRANSFERASE-RELATED (db=HMMPanther db_id=PTHR11135 from=83 to=521 evalue=4.8e-136)
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ACD51_56_13
uncultured bacterium, Bacteria
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Not on your lists |
15489..16199
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type 11 methyltransferase
S-adenosyl-L-methionine-dependent methyltransferases (db=superfamily db_id=SSF53335 from=1 to=224 evalue=1.5e-35)
no description (db=Gene3D db_id=G3DSA:3.40.50.150 from=1 to=209 evalue=7.2e-28)
UNCHARACTERIZED (db=HMMPanther db_id=PTHR13069 from=3 to=150 evalue=5.5e-25)
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ACD51_56_14
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria
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Not on your lists |
16162..16965
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exopolysaccharide biosynthesis protein, WecB/TagA/CpsF family
Glyco_tran_WecB (db=HMMPfam db_id=PF03808 from=86 to=244 evalue=4.3e-46 interpro_id=IPR004629 interpro_description=Glycosyl transferase WecB/TagA/CpsF GO=Biological Process: biosynthetic process (GO:0009058))
wecB_tagA_cpsF: glycosyl transferase, (db=HMMTigr db_id=TIGR00696 from=76 to=251 evalue=1.7e-24 interpro_id=IPR004629 interpro_description=Glycosyl transferase WecB/TagA/CpsF GO=Biological Process: biosynthetic process (GO:0009058))
glycosyl transferase, WecB/TagA/CpsF family (EC:2.4.1.187); K05946 N-acetylglucosaminyldiphosphoundecaprenol [EC:2.4.1.187] alias=ACD51_C00056G00014,ACD51_5535.29433.12G0014,ACD51_5535.29433.12_14 id=73942 tax=ACD51 species=Thermoanaerobacterium thermosaccharolyticum genus=Thermoanaerobacterium taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes organism_group=PER organism_desc=PER
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ACD51_56_15
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria
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Not on your lists |
comp(16949..17233)
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seg (db=Seg db_id=seg from=72 to=89)
seg (db=Seg db_id=seg from=21 to=34)
transmembrane_regions (db=TMHMM db_id=tmhmm from=10 to=32)
transmembrane_regions 10..32 Tax=RIFOXYC2_FULL_Peregrinibacteria_41_22_curated
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ACD51_56_16
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria
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Not on your lists |
comp(17295..18713)
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aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B (EC:6.3.5.-)
aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B (EC:6.3.5.-)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B n=1 Tax=Halothermothrix orenii H 168 RepID=B8D126_HALOH (db=UNIREF evalue=4.0e-137 bit_score=491.0 identity=53.47 coverage=98.7315010570825)
seg (db=Seg db_id=seg from=366 to=382)
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ACD51_56_17
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria
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Not on your lists |
comp(18742..19305)
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Dephospho-CoA kinase (EC:2.7.1.24)
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=1 to=183 evalue=2.0e-28)
CoaE (db=HMMPfam db_id=PF01121 from=6 to=147 evalue=1.0e-23 interpro_id=IPR001977 interpro_description=Dephospho-CoA kinase GO=Molecular Function: dephospho-CoA kinase activity (GO:0004140), Molecular Function: ATP binding (GO:0005524), Biological Process: coenzyme A biosynthetic process (GO:0015937))
TIGR00152: dephospho-CoA kinase (db=HMMTigr db_id=TIGR00152 from=6 to=179 evalue=2.0e-20 interpro_id=IPR001977 interpro_description=Dephospho-CoA kinase GO=Molecular Function: dephospho-CoA kinase activity (GO:0004140), Molecular Function: ATP binding (GO:0005524), Biological Process: coenzyme A biosynthetic process (GO:0015937))
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ACD51_56_18
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria
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Not on your lists |
comp(19327..19896)
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transmembrane_regions (db=TMHMM db_id=tmhmm from=21 to=43)
transmembrane_regions (db=TMHMM db_id=tmhmm from=56 to=78)
seg (db=Seg db_id=seg from=33 to=50)
hypothetical protein Tax=RIFOXYC2_FULL_Peregrinibacteria_41_22_curated
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ACD51_56_19
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria
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Not on your lists |
20004..20738
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signal peptidase I (EC:3.4.21.89)
transmembrane_regions (db=TMHMM db_id=tmhmm from=31 to=53)
seg (db=Seg db_id=seg from=36 to=58)
SPASE_I_2 (db=PatternScan db_id=PS00760 from=126 to=138 evalue=0.0 interpro_id=IPR019757 interpro_description=Peptidase S26A, signal peptidase I, lysine active site GO=Molecular Function: serine-type peptidase activity (GO:0008236), Cellular Component: integral to membrane (GO:0016021))
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ACD51_56_20
uncultured bacterium, Bacteria
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Not on your lists |
comp(20801..21202)
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transmembrane_regions (db=TMHMM db_id=tmhmm from=47 to=69)
transmembrane_regions (db=TMHMM db_id=tmhmm from=90 to=112)
seg (db=Seg db_id=seg from=45 to=58)
seg (db=Seg db_id=seg from=91 to=106)
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ACD51_56_21
uncultured bacterium, Bacteria
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Not on your lists |
comp(21189..21779)
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phage SPO1 DNA polymerase-related protein
seg (db=Seg db_id=seg from=182 to=194)
seg (db=Seg db_id=seg from=86 to=97)
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ACD51_56_22
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria
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Not on your lists |
comp(21763..22752)
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seg (db=Seg db_id=seg from=280 to=293)
seg (db=Seg db_id=seg from=9 to=24)
transmembrane_regions (db=TMHMM db_id=tmhmm from=300 to=322)
transmembrane_regions (db=TMHMM db_id=tmhmm from=237 to=259)
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ACD51_56_23
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria
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Not on your lists |
22846..23781
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methionyl-tRNA formyltransferase (EC:2.1.2.9)
seg (db=Seg db_id=seg from=67 to=76)
fmt: methionyl-tRNA formyltransferase (db=HMMTigr db_id=TIGR00460 from=4 to=308 evalue=1.3e-73 interpro_id=IPR005794 interpro_description=Methionyl-tRNA formyltransferase GO=Molecular Function: methionyl-tRNA formyltransferase activity (GO:0004479), Biological Process: translation (GO:0006412))
Formyltransferase (db=superfamily db_id=SSF53328 from=4 to=208 evalue=2.0e-53 interpro_id=IPR002376 interpro_description=Formyl transferase, N-terminal GO=Biological Process: biosynthetic process (GO:0009058), Molecular Function: hydroxymethyl-, formyl- and related transferase activity (GO:0016742))
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ACD51_56_24
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria
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Not on your lists |
comp(23738..24982)
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transmembrane_regions (db=TMHMM db_id=tmhmm from=371 to=390)
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=42)
seg (db=Seg db_id=seg from=85 to=99)
seg (db=Seg db_id=seg from=112 to=126)
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ACD51_56_25
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria
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Not on your lists |
comp(24948..26375)
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extracellular solute-binding protein family 1; K02027 multiple sugar transport system substrate-binding protein (db=KEGG evalue=2.0e-18 bit_score=97.8 identity=24.13 coverage=72.6890756302521)
seg (db=Seg db_id=seg from=25 to=33)
Periplasmic binding protein-like II (db=superfamily db_id=SSF53850 from=20 to=462 evalue=1.5e-45)
SBP_bac_1 (db=HMMPfam db_id=PF01547 from=46 to=383 evalue=2.1e-20 interpro_id=IPR006059 interpro_description=Bacterial extracellular solute-binding, family 1 GO=Molecular Function: transporter activity (GO:0005215), Biological Process: transport (GO:0006810))
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ACD51_56_26
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria
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Not on your lists |
comp(26387..27316)
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glycosyl transferase family protein
Nucleotide-diphospho-sugar transferases (db=superfamily db_id=SSF53448 from=1 to=278 evalue=2.0e-46)
no description (db=Gene3D db_id=G3DSA:3.90.550.10 from=4 to=221 evalue=4.0e-38)
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ACD51_56_27
uncultured bacterium, Bacteria
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Not on your lists |
comp(27411..27779)
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single-stranded DNA-binding protein
Single-stranded DNA-binding protein n=2 Tax=Sphingobacterium spiritivorum RepID=C2G0K8_9SPHI (db=UNIREF evalue=1.0e-21 bit_score=105.0 identity=44.64 coverage=89.4308943089431)
Nucleic acid-binding proteins (db=superfamily db_id=SSF50249 from=4 to=112 evalue=3.1e-37 interpro_id=IPR016027 interpro_description=Nucleic acid-binding, OB-fold-like)
SSB (db=HMMPfam db_id=PF00436 from=4 to=107 evalue=3.2e-34 interpro_id=IPR000424 interpro_description=Primosome PriB/single-strand DNA-binding GO=Molecular Function: single-stranded DNA binding (GO:0003697))
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ACD51_56_28
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria
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Not on your lists |
28001..28345
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seg (db=Seg db_id=seg from=29 to=41)
seg 29..41 Tax=RIFOXYC2_FULL_Peregrinibacteria_41_22_curated
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ACD51_56_29
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria
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Not on your lists |
28348..28941
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riboflavin synthase subunit alpha (EC:2.5.1.9)
seg (db=Seg db_id=seg from=55 to=66)
Riboflavin synthase, alpha subunit (db=HMMPIR db_id=PIRSF000498 from=1 to=194 evalue=4.3e-78 interpro_id=IPR001783 interpro_description=Lumazine-binding protein)
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ACD51_56_30
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria
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Not on your lists |
29004..29450
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ribH; 6,7-dimethyl-8-ribityllumazine synthase
seg (db=Seg db_id=seg from=122 to=133)
seg (db=Seg db_id=seg from=134 to=148)
DMRL_synthase (db=HMMPfam db_id=PF00885 from=2 to=128 evalue=3.0e-38 interpro_id=IPR002180 interpro_description=6,7-dimethyl-8-ribityllumazine synthase GO=Biological Process: riboflavin biosynthetic process (GO:0009231), Cellular Component: riboflavin synthase complex (GO:0009349))
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