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S_scaffold_56

Alias: S_Synergistetes_54_25_4

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Displaying items 1-30 of 46 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S_scaffold_56_1
Anaerobaculum mobile, Anaerobaculum, Synergistales, Synergistia, Synergistetes, Bacteria

Not on your lists

comp(3..560)
DNA (558bp) protein (186aa)
nicotinamidase-like amidase
Nicotinamidase-like amidase {ECO:0000313|EMBL:AFM21636.1}; TaxID=891968 species="Bacteria; Synergistetes; Synergistia; Synergistales; Synergistaceae; Anaerobaculum.;" source="Anaerobaculum mobile (str
Nicotinamidase-like amidase
S_scaffold_56_2
Aminobacterium colombiense, Aminobacterium, Synergistales, Synergistia, Synergistetes, Bacteria

Not on your lists

761..2158
DNA (1398bp) protein (466aa)
L-seryl-tRNA selenium transferase (EC:2.9.1.1)
L-seryl-tRNA(Sec) selenium transferase {ECO:0000256|HAMAP-Rule:MF_00423, ECO:0000256|SAAS:SAAS00029253}; EC=2.9.1.1 {ECO:0000256|HAMAP-Rule:MF_00423, ECO:0000256|SAAS:SAAS00029254};; Selenocysteine sy
L-seryl-tRNA(Sec) selenium transferase
S_scaffold_56_3
Anaerobaculum mobile, Anaerobaculum, Synergistales, Synergistia, Synergistetes, Bacteria

Not on your lists

2155..4089
DNA (1935bp) protein (645aa)
selenocysteine-specific elongation factor SelB rbh
Selenocysteine-specific elongation factor SelB {ECO:0000313|EMBL:AFM21631.1}; TaxID=891968 species="Bacteria; Synergistetes; Synergistia; Synergistales; Synergistaceae; Anaerobaculum.;" source="Anaero
Selenocysteine-specific elongation factor SelB
S_scaffold_56_4
Anaerobaculum mobile, Anaerobaculum, Synergistales, Synergistia, Synergistetes, Bacteria

Not on your lists

4172..4417
DNA (246bp) protein (82aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFM21597.1}; TaxID=891968 species="Bacteria; Synergistetes; Synergistia; Synergistales; Synergistaceae; Anaerobaculum.;" source="Anaerobaculum mobile (strain
Uncharacterized protein
S_scaffold_56_5
Dethiosulfovibrio peptidovorans, Dethiosulfovibrio, Synergistales, Synergistia, Synergistetes, Bacteria

Not on your lists

4477..5346
DNA (870bp) protein (290aa)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061}; Short=CMK {ECO:0000256|HAMAP-Rule:MF_00061};; EC=2.7.1.148 {ECO:0000256|HAMAP-Rule:MF_00061};; 4-(cytidine-5'-dipho
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC:2.7.1.148)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
S_scaffold_56_6
Thermovirga lienii, Thermovirga, Synergistales, Synergistia, Synergistetes, Bacteria

Not on your lists

5573..5764
DNA (192bp) protein (64aa)
4Fe-4S ferredoxin
4Fe-4S ferredoxin iron-sulfur binding domain protein {ECO:0000313|EMBL:AER66867.1}; TaxID=580340 species="Bacteria; Synergistetes; Synergistia; Synergistales; Synergistaceae; Thermovirga.;" source="Th
4Fe-4S ferredoxin iron-sulfur binding domain protein
S_scaffold_56_7
R_Deltaproteobacteria_43_33, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5966..6385
DNA (420bp) protein (140aa)
ribonuclease H Tax=RIFCSPHIGHO2_02_FULL_Deltaproteobacteria_43_33_curated
ribonuclease H
Ribonuclease H
S_scaffold_56_8
Aminobacterium colombiense, Aminobacterium, Synergistales, Synergistia, Synergistetes, Bacteria

Not on your lists

6408..7397
DNA (990bp) protein (330aa)
tryptophanyl-tRNA synthetase (EC:6.1.1.2)
Tryptophan--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00140, ECO:0000256|SAAS:SAAS00009965}; EC=6.1.1.2 {ECO:0000256|HAMAP-Rule:MF_00140, ECO:0000256|SAAS:SAAS00009965};; Tryptophanyl-tRNA synthetase {EC
Tryptophan--tRNA ligase
S_scaffold_56_9
Fretibacterium fastidiosum, Fretibacterium, Synergistales, Synergistia, Synergistetes, Bacteria

Not on your lists

7394..8113
DNA (720bp) protein (240aa)
hypothetical protein
Uncharacterized conserved protein {ECO:0000313|EMBL:CBL28414.1}; TaxID=651822 species="Bacteria; Synergistetes; Synergistia; Synergistales; Synergistaceae; Fretibacterium.;" source="Fretibacterium fas
Uncharacterized conserved protein
S_scaffold_56_10
BJP_IG2069_Synergistales_47_25, Synergistales, Synergistia, Synergistetes, Bacteria

Not on your lists

8088..8666
DNA (579bp) protein (193aa)
chromosome segregation and condensation protein ScpB
Chromosome segregation and condensation protein, ScpB
Tax=BJP_IG2069_Synergistales_47_25
S_scaffold_56_11
Thermanaerovibrio acidaminovorans, Thermanaerovibrio, Synergistales, Synergistia, Synergistetes, Bacteria

Not on your lists

8647..9405
DNA (759bp) protein (253aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=525903 species="Bacteria; Synergistetes; Synergistia; Synergistales; Synergistaceae; Therman
pseudouridine synthase
Pseudouridine synthase
S_scaffold_56_12
Aminomonas paucivorans, Aminomonas, Synergistales, Synergistia, Synergistetes, Bacteria

Not on your lists

9438..10310
DNA (873bp) protein (291aa)
Metal dependent phosphohydrolase {ECO:0000313|EMBL:EFQ23635.1}; TaxID=584708 species="Bacteria; Synergistetes; Synergistia; Synergistales; Synergistaceae; Aminomonas.;" source="Aminomonas paucivorans
metal dependent phosphohydrolase rbh
Metal dependent phosphohydrolase
S_scaffold_56_13
Aminobacterium colombiense, Aminobacterium, Synergistales, Synergistia, Synergistetes, Bacteria

Not on your lists

10307..10990
DNA (684bp) protein (228aa)
Cytidylate kinase {ECO:0000256|HAMAP-Rule:MF_00238}; Short=CK {ECO:0000256|HAMAP-Rule:MF_00238};; EC=2.7.4.25 {ECO:0000256|HAMAP-Rule:MF_00238};; Cytidine monophosphate kinase {ECO:0000256|HAMAP-Rule:
cytidylate kinase
Cytidylate kinase
S_scaffold_56_14
Anaerobaculum mobile, Anaerobaculum, Synergistales, Synergistia, Synergistetes, Bacteria

Not on your lists

10983..11603
DNA (621bp) protein (207aa)
1-acyl-sn-glycerol-3-phosphate acyltransferase
1-acyl-sn-glycerol-3-phosphate acyltransferase {ECO:0000313|EMBL:AFM21584.1}; TaxID=891968 species="Bacteria; Synergistetes; Synergistia; Synergistales; Synergistaceae; Anaerobaculum.;" source="Anaero
1-acyl-sn-glycerol-3-phosphate acyltransferase
S_scaffold_56_15
Anaerobaculum hydrogeniformans, Anaerobaculum, Synergistales, Synergistia, Synergistetes, Bacteria

Not on your lists

11600..12745
DNA (1146bp) protein (382aa)
GTPase HflX {ECO:0000256|HAMAP-Rule:MF_00900}; GTP-binding protein HflX {ECO:0000256|HAMAP-Rule:MF_00900}; TaxID=592015 species="Bacteria; Synergistetes; Synergistia; Synergistales; Synergistaceae; An
GTP-binding protein HflX
GTPase HflX
S_scaffold_56_16
Synergistes sp. 3_1_syn1, Synergistes, Synergistales, Synergistia, Synergistetes, Bacteria

Not on your lists

12760..13644
DNA (885bp) protein (295aa)
hypothetical protein
TIGR00255 family protein {ECO:0000313|EMBL:EHL64447.1}; TaxID=457415 species="Bacteria; Synergistetes; Synergistia; Synergistales; Synergistaceae; Synergistes.;" source="Synergistes sp. 3_1_syn1.;"
TIGR00255 family protein
S_scaffold_56_17
Aminobacterium colombiense, Aminobacterium, Synergistales, Synergistia, Synergistetes, Bacteria

Not on your lists

13648..13935
DNA (288bp) protein (96aa)
hypothetical protein
UPF0296 protein Amico_1085 {ECO:0000256|HAMAP-Rule:MF_01503}; TaxID=572547 species="Bacteria; Synergistetes; Synergistia; Synergistales; Synergistaceae; Aminobacterium.;" source="Aminobacterium colomb
UPF0296 protein Amico_1085
S_scaffold_56_18
Anaerobaculum mobile, Anaerobaculum, Synergistales, Synergistia, Synergistetes, Bacteria

Not on your lists

13892..14467
DNA (576bp) protein (192aa)
guanylate kinase (EC:2.7.4.8)
Guanylate kinase {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00021750}; EC=2.7.4.8 {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00036702};; GMP kinase {ECO:0000256|HAMAP-Rule:MF_0
Guanylate kinase
S_scaffold_56_19
Thermanaerovibrio acidaminovorans, Thermanaerovibrio, Synergistales, Synergistia, Synergistetes, Bacteria

Not on your lists

14474..14746
DNA (273bp) protein (91aa)
DNA-directed RNA polymerase subunit omega
DNA-directed RNA polymerase, omega subunit {ECO:0000313|EMBL:ACZ19019.1}; TaxID=525903 species="Bacteria; Synergistetes; Synergistia; Synergistales; Synergistaceae; Thermanaerovibrio.;" source="Therma
DNA-directed RNA polymerase, omega subunit
S_scaffold_56_20
Anaerobaculum mobile, Anaerobaculum, Synergistales, Synergistia, Synergistetes, Bacteria

Not on your lists

14754..15947
DNA (1194bp) protein (398aa)
phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase
Phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase {ECO:0000313|EMBL:AFM21578.1}; TaxID=891968 species="Bacteria; Synergistetes; Synergistia; Synergistales; Synergistaceae;
Phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase
S_scaffold_56_21
Anaerobaculum mobile, Anaerobaculum, Synergistales, Synergistia, Synergistetes, Bacteria

Not on your lists

15944..17737
DNA (1794bp) protein (598aa)
replication restart DNA helicase PriA
Replication restart DNA helicase PriA {ECO:0000313|EMBL:AFM21577.1}; TaxID=891968 species="Bacteria; Synergistetes; Synergistia; Synergistales; Synergistaceae; Anaerobaculum.;" source="Anaerobaculum m
Replication restart DNA helicase PriA
S_scaffold_56_22
Aminobacterium colombiense, Aminobacterium, Synergistales, Synergistia, Synergistetes, Bacteria

Not on your lists

17742..19067
DNA (1326bp) protein (442aa)
ribosome-associated GTPase EngA
GTPase Der {ECO:0000256|HAMAP-Rule:MF_00195, ECO:0000256|RuleBase:RU004481}; GTP-binding protein EngA {ECO:0000256|HAMAP-Rule:MF_00195}; TaxID=572547 species="Bacteria; Synergistetes; Synergistia; Syn
GTPase Der
S_scaffold_56_23
Aminobacterium colombiense, Aminobacterium, Synergistales, Synergistia, Synergistetes, Bacteria

Not on your lists

19162..19440
DNA (279bp) protein (93aa)
histone family protein DNA-binding protein
Histone family protein DNA-binding protein {ECO:0000313|EMBL:ADE57203.1}; TaxID=572547 species="Bacteria; Synergistetes; Synergistia; Synergistales; Synergistaceae; Aminobacterium.;" source="Aminobact
Histone family protein DNA-binding protein
S_scaffold_56_24
Dethiosulfovibrio peptidovorans, Dethiosulfovibrio, Synergistales, Synergistia, Synergistetes, Bacteria

Not on your lists


comp(19446..20291)
DNA (846bp) protein (282aa)
Ribosomal RNA small subunit methyltransferase A {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015019}; EC=2.1.1.182 {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015085};; 16S rR
dimethyladenosine transferase
Ribosomal RNA small subunit methyltransferase A
S_scaffold_56_25
Aminobacterium colombiense, Aminobacterium, Synergistales, Synergistia, Synergistetes, Bacteria

Not on your lists

comp(20465..20740)
DNA (276bp) protein (92aa)
N-acetyltransferase GCN5
GCN5-related N-acetyltransferase {ECO:0000313|EMBL:ADE56333.1}; TaxID=572547 species="Bacteria; Synergistetes; Synergistia; Synergistales; Synergistaceae; Aminobacterium.;" source="Aminobacterium colo
GCN5-related N-acetyltransferase
S_scaffold_56_26
Anaerobaculum mobile, Anaerobaculum, Synergistales, Synergistia, Synergistetes, Bacteria

Not on your lists

comp(20856..21947)
DNA (1092bp) protein (364aa)
ATP-grasp enzyme, D-alanine-D-alanine ligase
ATP-grasp enzyme, D-alanine-D-alanine ligase {ECO:0000313|EMBL:AFM22450.1}; TaxID=891968 species="Bacteria; Synergistetes; Synergistia; Synergistales; Synergistaceae; Anaerobaculum.;" source="Anaeroba
ATP-grasp enzyme, D-alanine-D-alanine ligase
S_scaffold_56_27
Aminobacterium colombiense, Aminobacterium, Synergistales, Synergistia, Synergistetes, Bacteria

Not on your lists

comp(21934..23028)
DNA (1095bp) protein (365aa)
D-alanine--D-alanine ligase (EC:6.3.2.4) rbh
D-alanine--D-alanine ligase {ECO:0000256|SAAS:SAAS00233243}; EC=6.3.2.4 {ECO:0000256|SAAS:SAAS00233243};; TaxID=572547 species="Bacteria; Synergistetes; Synergistia; Synergistales; Synergistaceae; Ami
D-alanine--D-alanine ligase
S_scaffold_56_28
unknown

Not on your lists

comp(23079..23330)
DNA (252bp) protein (84aa)
S_scaffold_56_29

Not on your lists

comp(23463..24497)
DNA (1035bp) protein (345aa)
cellulase (EC:3.2.1.4)
Marine sediment metagenome DNA, contig: S03H2_S11238 {ECO:0000313|EMBL:GAH75817.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marin
Cellulase
S_scaffold_56_30
Clostridium ultunense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24672..25955
DNA (1284bp) protein (428aa)
Peptidase M20 {ECO:0000313|EMBL:CCQ95135.1}; TaxID=1288971 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium ultunense Esp.;"
putative acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase
Peptidase M20
Displaying items 1-30 of 46 in total

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