ggKbase home page

SCN18_10_11_15_R5_P_SCNPILOT_CONT_1000_P_Legionella_39_23-related_40_28

SCN18_10_11_15_R5_P_unknown_41_27
In projects: SCN18_10_11_15_R5_P  |  scn18_genomes

Consensus taxonomy:

Displaying items 1-50 of 149 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCN18_10_11_15_R5_P_scaffold_2878
Species: SCNpilot_BF_INOC_Flavobacterium_39_30 (66.67%)
3 3430 bp 44.81 38.53 100.85
SCN18_10_11_15_R5_P_scaffold_8917
Species: SCNpilot_BF_INOC_Bacteroidetes_39_46 (100%)
1 1275 bp 44.00 18.59 100.00
SCN18_10_11_15_R5_P_scaffold_5204
Species: SCNPILOT_CONT_1000_P_Alphaproteobacteria_novel_41_6_7 (100%)
1 1902 bp 38.43 43.85 100.00
SCN18_10_11_15_R5_P_scaffold_9977
Species: SCNPILOT_EXPT_750_BF_Actinomycetales_70_150 (50%)
2 1170 bp 42.48 25.38 100.00
SCN18_10_11_15_R5_P_scaffold_3771
Species: SCNPILOT_CONT_1000_P_Alphaproteobacteria_novel_41_6_7 (100%)
1 2412 bp 42.79 16.36 100.00
SCN18_10_11_15_R5_P_scaffold_3425
Species: SCNpilot_BF_INOC_Flavobacterium_39_30 (100%)
1 3857 bp 46.85 33.99 99.95
SCN18_10_11_15_R5_P_scaffold_1628
Species: SCNpilot_P_inoc_Rhodobacter_64_50 (100%)
1 4779 bp 35.07 22.82 99.94
SCN18_10_11_15_R5_P_scaffold_2987
Species: SCNPILOT_CONT_1000_P_Legionella_39_23 (100%)
1 2891 bp 46.04 36.32 99.93
SCN18_10_11_15_R5_P_scaffold_3313
Species: SCNPILOT_CONT_1000_P_Alphaproteobacteria_novel_41_6_7 (100%)
1 2667 bp 38.55 37.12 99.89
SCN18_10_11_15_R5_P_scaffold_7666
Species: SCNPILOT_CONT_1000_P_Legionella_39_23 (100%)
1 1430 bp 41.61 17.52 99.86
SCN18_10_11_15_R5_P_scaffold_9175
Species: SCNPILOT_CONT_1000_P_Legionella_39_23 (100%)
1 1247 bp 42.98 15.76 99.84
SCN18_10_11_15_R5_P_scaffold_6011
Species: SCNPILOT_CONT_1000_P_Alphaproteobacteria_novel_41_6_7 (100%)
1 1714 bp 38.16 20.22 99.77
SCN18_10_11_15_R5_P_scaffold_16032
Species: SCNPILOT_CONT_1000_P_Alphaproteobacteria_64_11 (50%)
2 1422 bp 40.93 59.18 99.16
SCN18_10_11_15_R5_P_scaffold_5563
Species: SCNPILOT_CONT_1000_P_Legionella_39_23 (100%)
2 1816 bp 41.91 24.61 99.12
SCN18_10_11_15_R5_P_scaffold_1566
Domain: Bacteria (60%)
5 4969 bp 44.27 43.41 98.83
SCN18_10_11_15_R5_P_scaffold_8439
Species: SCNPILOT_CONT_1000_P_Legionella_39_23 (50%)
2 1328 bp 44.13 24.62 98.72
SCN18_10_11_15_R5_P_scaffold_11717
Species: SCNpilot_BF_INOC_Bacteroidetes_37_82 (100%)
1 1037 bp 39.63 30.67 98.07
SCN18_10_11_15_R5_P_scaffold_907
Genus: Legionella (60%)
5 8685 bp 39.18 27.01 96.86
SCN18_10_11_15_R5_P_scaffold_4970
Species: SCNPILOT_CONT_1000_P_Legionella_39_23 (50%)
2 1959 bp 45.84 32.01 96.78
SCN18_10_11_15_R5_P_scaffold_314
Species: SCNPILOT_CONT_1000_P_Legionella_39_23 (62.5%)
16 35255 bp 41.11 29.69 96.41
SCN18_10_11_15_R5_P_scaffold_324
Species: SCNpilot_P_inoc_Niastella_39_19 (100%)
13 33856 bp 43.96 25.44 96.21
SCN18_10_11_15_R5_P_scaffold_319
Species: SCNPILOT_CONT_1000_P_Legionella_39_23 (83.33%)
30 34463 bp 42.66 37.70 95.95
SCN18_10_11_15_R5_P_scaffold_561
Species: SCNPILOT_CONT_1000_P_Legionella_39_23 (85.71%)
14 15375 bp 41.04 26.87 95.85
SCN18_10_11_15_R5_P_scaffold_592
Species: SCNpilot_P_inoc_Niastella_39_19 (100%)
5 14545 bp 44.22 40.44 95.37
SCN18_10_11_15_R5_P_scaffold_393
Species: SCNPILOT_CONT_1000_P_Legionella_39_23 (97.14%)
35 25993 bp 41.09 27.76 95.23
SCN18_10_11_15_R5_P_scaffold_427
Species: SCNPILOT_CONT_1000_P_Legionella_39_23 (90.48%)
21 23242 bp 42.58 32.13 95.00
SCN18_10_11_15_R5_P_scaffold_1734
Species: SCNPILOT_CONT_1000_P_Legionella_39_23 (75%)
4 4541 bp 42.00 24.68 95.00
SCN18_10_11_15_R5_P_scaffold_1322
Genus: Legionella (50%)
10 5804 bp 35.15 15.97 94.80
SCN18_10_11_15_R5_P_scaffold_1363
Species: SCNPILOT_CONT_1000_P_Legionella_39_23 (100%)
5 5594 bp 40.90 21.56 94.66
SCN18_10_11_15_R5_P_scaffold_198
Species: SCNPILOT_CONT_1000_P_Legionella_39_23 (83.08%)
65 68509 bp 39.14 16.36 94.63
SCN18_10_11_15_R5_P_scaffold_3344
Genus: Legionella (100%)
5 2649 bp 39.37 18.91 94.45
SCN18_10_11_15_R5_P_scaffold_2829
Species: SCNPILOT_CONT_1000_P_Legionella_39_23 (66.67%)
3 3013 bp 36.28 30.52 94.39
SCN18_10_11_15_R5_P_scaffold_308
Species: SCNPILOT_CONT_1000_P_Legionella_39_23 (79.31%)
29 35939 bp 42.62 35.97 94.37
SCN18_10_11_15_R5_P_scaffold_861
Phylum: Proteobacteria (72.73%)
11 9176 bp 34.29 23.57 94.32
SCN18_10_11_15_R5_P_scaffold_90
Species: SCNPILOT_CONT_1000_P_Legionella_39_23 (66.91%)
136 159895 bp 39.96 23.48 94.27
SCN18_10_11_15_R5_P_scaffold_620
Species: SCNPILOT_CONT_1000_P_Legionella_39_23 (90.91%)
11 13545 bp 40.63 28.47 94.22
SCN18_10_11_15_R5_P_scaffold_1471
Species: SCNpilot_P_inoc_Niastella_39_19 (100%)
6 5261 bp 40.32 30.85 93.97
SCN18_10_11_15_R5_P_scaffold_170
Species: SCNPILOT_CONT_1000_P_Legionella_39_23 (86.67%)
75 79289 bp 41.44 28.55 93.84
SCN18_10_11_15_R5_P_scaffold_232
Species: SCNPILOT_CONT_1000_P_Legionella_39_23 (87.04%)
54 53670 bp 39.70 25.18 93.75
SCN18_10_11_15_R5_P_scaffold_168
Species: SCNPILOT_CONT_1000_P_Legionella_39_23 (74.58%)
59 79693 bp 41.12 28.61 93.73
SCN18_10_11_15_R5_P_scaffold_340
Species: SCNPILOT_CONT_1000_P_Legionella_39_23 (50%)
26 31864 bp 39.71 21.34 93.70
SCN18_10_11_15_R5_P_scaffold_139
Species: SCNPILOT_CONT_1000_P_Legionella_39_23 (90.91%)
88 102736 bp 41.34 28.90 93.69
SCN18_10_11_15_R5_P_scaffold_876
Species: SCNPILOT_CONT_1000_P_Legionella_39_23 (100%)
7 8969 bp 44.06 32.66 93.56
SCN18_10_11_15_R5_P_scaffold_5951
Species: SCNPILOT_CONT_1000_P_Legionella_39_23 (50%)
2 1726 bp 38.93 17.12 93.51
SCN18_10_11_15_R5_P_scaffold_1636
Species: SCNPILOT_CONT_1000_P_Legionella_39_23 (50%)
4 4759 bp 38.68 28.43 93.42
SCN18_10_11_15_R5_P_scaffold_529
Species: SCNPILOT_CONT_1000_P_Legionella_39_23 (92.86%)
14 16724 bp 38.65 16.05 93.33
SCN18_10_11_15_R5_P_scaffold_180
Species: SCNPILOT_CONT_1000_P_Legionella_39_23 (75.38%)
65 75786 bp 40.87 26.27 93.32
SCN18_10_11_15_R5_P_scaffold_448
Species: SCNPILOT_CONT_1000_P_Legionella_39_23 (70%)
20 21632 bp 37.55 18.83 93.26
SCN18_10_11_15_R5_P_scaffold_233
Species: SCNPILOT_CONT_1000_P_Legionella_39_23 (89.47%)
57 52826 bp 41.40 29.26 93.23
SCN18_10_11_15_R5_P_scaffold_371
Species: SCNPILOT_CONT_1000_P_Legionella_39_23 (57.89%)
19 28662 bp 41.33 27.88 93.23
Displaying items 1-50 of 149 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.