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SCN18_14_9_16_R2_B_scaffold_157

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Displaying items 1-30 of 142 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_14_9_16_R2_B_scaffold_157_1
CN-SCN_Phenylobacterium_31x, RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

113..607
DNA (495bp) protein (165aa)
Isoprenylcysteine carboxyl methyltransferase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QG97_NITHX
isoprenylcysteine carboxyl methyltransferase
Isoprenylcysteine carboxyl methyltransferase {ECO:0000313|EMBL:ABE64750.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCN18_14_9_16_R2_B_scaffold_157_2
SCNPILOT_CONT_1000_BF_Rhizobiales_65_18, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(739..1188)
DNA (450bp) protein (150aa)
Uncharacterized protein n=1 Tax=Pseudomonas resinovorans NBRC 106553 RepID=S6AS62_PSERE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDM56762.1}; TaxID=348824 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. LPU83.;"
SCN18_14_9_16_R2_B_scaffold_157_3
unknown

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1411..1788
DNA (378bp) protein (126aa)

This feature has no annotations

SCN18_14_9_16_R2_B_scaffold_157_4
SCNPILOT_EXPT_300_BF_Novosphingobium_63_58, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2020..3306
DNA (1287bp) protein (429aa)
Citrate carrier protein n=1 Tax=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) RepID=B1M1C4_METRJ
Malate permease {ECO:0000313|EMBL:KJC40169.1}; TaxID=1615890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP849.;"
citrate carrier protein
SCN18_14_9_16_R2_B_scaffold_157_5
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3349..4278
DNA (930bp) protein (310aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8NVQ7_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS33231.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
nitrogen assimilation transcriptional regulator protein
SCN18_14_9_16_R2_B_scaffold_157_6
unknown

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4381..4563
DNA (183bp) protein (61aa)

This feature has no annotations

SCN18_14_9_16_R2_B_scaffold_157_7
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4768..5520
DNA (753bp) protein (251aa)
Uncharacterized protein n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KHG0_MESAW
Uncharacterized protein {ECO:0000313|EMBL:KIZ40259.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
hypothetical protein
SCN18_14_9_16_R2_B_scaffold_157_8
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5525..7288
DNA (1764bp) protein (588aa)
GMC family oxidoreductase n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI0003455AB4
GMC family oxidoreductase {ECO:0000313|EMBL:KIZ40258.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
gluconate 2-dehydrogenase flavoprotein precursor
SCN18_14_9_16_R2_B_scaffold_157_9
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7293..8522
DNA (1230bp) protein (410aa)
alcohol dehydrogenase n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI000345DFA9
Alcohol dehydrogenase {ECO:0000313|EMBL:KIZ40257.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
Gluconate 2-dehydrogenase subunit
SCN18_14_9_16_R2_B_scaffold_157_10
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8546..8845)
DNA (300bp) protein (100aa)
UPI0003D68D0F related cluster n=1 Tax=unknown RepID=UPI0003D68D0F
Uncharacterized protein {ECO:0000313|EMBL:KGM34409.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
Caa(3)-type oxidase subunit IV
SCN18_14_9_16_R2_B_scaffold_157_11
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8842..9486)
DNA (645bp) protein (215aa)
Cytochrome c oxidase subunit III n=1 Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5BWN1_NITHN
cytochrome C oxidase subunit III
Cytochrome c oxidase subunit III {ECO:0000313|EMBL:ADE15688.1}; Flags: Precursor;; TaxID=472759 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus halophilus (strain Nc4).;"
SCN18_14_9_16_R2_B_scaffold_157_12
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9479..11080)
DNA (1602bp) protein (534aa)
cytochrome-c oxidase (EC:1.9.3.1)
cytochrome C oxidase subunit I n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI000301F116
Putative cytochrome c oxidase subunit I {ECO:0000313|EMBL:GAO38475.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
SCN18_14_9_16_R2_B_scaffold_157_13
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11077..12018)
DNA (942bp) protein (314aa)
Cytochrome c oxidase subunit 2 n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XE51_9BACT
Putative cytochrome c oxidase subunit II {ECO:0000313|EMBL:GAO38474.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
cytochrome c oxidase subunit II
SCN18_14_9_16_R2_B_scaffold_157_14
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12036..12419)
DNA (384bp) protein (128aa)
Uncharacterized protein n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IHH0_METNO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACL61633.1}; Flags: Precursor;; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
SCN18_14_9_16_R2_B_scaffold_157_15
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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12500..13171
DNA (672bp) protein (224aa)
Chaperone protein HtpG n=1 Tax=Methylobacterium sp. GXF4 RepID=I9CMG1_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:GAO38471.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
cytochrome C
SCN18_14_9_16_R2_B_scaffold_157_16
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13168..16035
DNA (2868bp) protein (956aa)
Uncharacterized protein n=1 Tax=Pseudomonas stutzeri MF28 RepID=U3HPE5_PSEST
Uncharacterized protein {ECO:0000313|EMBL:EQM73690.1}; TaxID=1333856 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri MF28.;"
molybdopterin oxidoreductase
SCN18_14_9_16_R2_B_scaffold_157_17
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16032..17387
DNA (1356bp) protein (452aa)
Polysulfide reductase NrfD n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TKM2_TISMK
Polysulphide reductase NrfD family protein {ECO:0000313|EMBL:GAO38469.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
polysulfide reductase NrfD
SCN18_14_9_16_R2_B_scaffold_157_18
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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17380..17910
DNA (531bp) protein (177aa)
Transmembrane prediction n=1 Tax=Rhizobium leguminosarum bv. trifolii (strain WSM1325) RepID=C6B8I3_RHILS
Uncharacterized protein {ECO:0000313|EMBL:GAO38468.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
transmembrane prediction
SCN18_14_9_16_R2_B_scaffold_157_19
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17907..18440
DNA (534bp) protein (178aa)
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI0002D51F0F
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDX13458.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
SCN18_14_9_16_R2_B_scaffold_157_20
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18437..19498
DNA (1062bp) protein (354aa)
hypothetical protein n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI00031C31FD
Uncharacterized protein {ECO:0000313|EMBL:GAO38466.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
hypothetical protein
SCN18_14_9_16_R2_B_scaffold_157_21
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19473..20315)
DNA (843bp) protein (281aa)
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI00037E579E
Uncharacterized protein {ECO:0000313|EMBL:CCD98326.1}; TaxID=551936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3809.;"
hypothetical protein
SCN18_14_9_16_R2_B_scaffold_157_22
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(20315..20662)
DNA (348bp) protein (116aa)
hypothetical protein n=1 Tax=Bradyrhizobium japonicum RepID=UPI00036CB62D
Thiamine pyrophosphate-dependent enzyme, possible carboligase or decarboxylase {ECO:0000313|EMBL:EIG58110.1}; TaxID=319003 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM1253.;"
pyruvate decarboxylase
SCN18_14_9_16_R2_B_scaffold_157_23
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20659..21141)
DNA (483bp) protein (161aa)
Thiamine pyrophosphate-dependent enzyme, possible carboligase or decarboxylase n=1 Tax=Bradyrhizobium sp. WSM1253 RepID=I2QEA4_9BRAD
Thiamine pyrophosphate-dependent enzyme, possible carboligase or decarboxylase {ECO:0000313|EMBL:EIG58110.1}; TaxID=319003 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM1253.;"
thiamine pyrophosphate-binding protein
SCN18_14_9_16_R2_B_scaffold_157_24
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21830..22576)
DNA (747bp) protein (249aa)
Uncharacterized protein n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7YAQ2_MESOW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEH88812.1}; TaxID=536019 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075).;"
SCN18_14_9_16_R2_B_scaffold_157_25
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22597..22761)
DNA (165bp) protein (55aa)
SCN18_14_9_16_R2_B_scaffold_157_26
Magnetospirillum gryphiswaldense_SCNpilot_P_inoc_Magnetospirillum_64_120, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22888..24252)
DNA (1365bp) protein (455aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
Signal transduction histidine kinase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QIB8_NITHX
sensor signal transduction histidine kinase
SCN18_14_9_16_R2_B_scaffold_157_27
Magnetospirillum gryphiswaldense_SCNpilot_P_inoc_Magnetospirillum_64_120, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(24582..25451)
DNA (870bp) protein (290aa)
Two component transcriptional regulator, winged helix family n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QIB7_NITHX
two component transcriptional regulator
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:ABE64030.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCN18_14_9_16_R2_B_scaffold_157_28
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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25570..26826
DNA (1257bp) protein (419aa)
Secretion protein HlyD n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QIB6_NITHX
secretion protein HlyD
Secretion protein HlyD {ECO:0000313|EMBL:ABE64031.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCN18_14_9_16_R2_B_scaffold_157_29
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26846..29998
DNA (3153bp) protein (1051aa)
Heavy metal efflux pump CzcA n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QIB5_NITHX
Heavy metal efflux pump CzcA {ECO:0000313|EMBL:ABE64032.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
heavy metal efflux pump CzcA
SCN18_14_9_16_R2_B_scaffold_157_30
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30037..31575
DNA (1539bp) protein (513aa)
RND efflux system, outer membrane lipoprotein, NodT n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QIB4_NITHX
RND efflux system, outer membrane lipoprotein, NodT
RND efflux system, outer membrane lipoprotein, NodT {ECO:0000313|EMBL:ABE64033.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
Displaying items 1-30 of 142 in total

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