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SCN18_25_1_16_R1_B_scaffold_579

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_1_16_R1_B_scaffold_579_1
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(250..1305)
DNA (1056bp) protein (352aa)
selD; selenide, water dikinase (EC:2.7.9.3)
Selenide, water dikinase {ECO:0000256|HAMAP-Rule:MF_00625, ECO:0000256|SAAS:SAAS00014883}; EC=2.7.9.3 {ECO:0000256|HAMAP-Rule:MF_00625, ECO:0000256|SAAS:SAAS00014883};; Selenium donor protein {ECO:0000256|HAMAP-Rule:MF_00625}; Selenophosphate synthase {ECO:0000256|HAMAP-Rule:MF_00625}; TaxID=1349767 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628.;"
Selenide, water dikinase n=1 Tax=Cupriavidus necator (strain ATCC 43291 / DSM 13513 / N-1) RepID=F8GPL6_CUPNN
SCN18_25_1_16_R1_B_scaffold_579_2
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1302..2108)
DNA (807bp) protein (269aa)
Enoyl-[acyl-carrier-protein] reductase [NADH] {ECO:0000256|PIRNR:PIRNR000094}; EC=1.3.1.9 {ECO:0000256|PIRNR:PIRNR000094};; TaxID=391597 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Limnobacter.;" source="Limnobacter sp. MED105.;"
enoyl-[acyl-carrier protein] reductase (NADH) (EC:1.3.1.9)
Enoyl-[acyl-carrier-protein] reductase [NADH] n=1 Tax=Limnobacter sp. MED105 RepID=A6GQB1_9BURK
SCN18_25_1_16_R1_B_scaffold_579_3
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2137..4023
DNA (1887bp) protein (629aa)
Tat pathway signal sequence domain protein n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RWT0_9BURK
Tat pathway signal sequence domain protein {ECO:0000313|EMBL:EFV95184.1}; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia.;" source="Lautropia mirabilis ATCC 51599.;"
bacterial extracellular solute-binding s, 5 Middle family protein
SCN18_25_1_16_R1_B_scaffold_579_4
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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4023..5069
DNA (1047bp) protein (349aa)
ABC transporter, permease protein n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RWS9_9BURK
ABC transporter, permease protein {ECO:0000313|EMBL:EFV95183.1}; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia.;" source="Lautropia mirabilis ATCC 51599.;"
binding-protein-dependent transport system inner membrane protein
SCN18_25_1_16_R1_B_scaffold_579_5
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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5066..6094
DNA (1029bp) protein (343aa)
ABC transporter permease n=1 Tax=Ralstonia sp. PBA RepID=I9W169_9RALS
ABC peptide transporter, inner membrane subunit
ABC peptide transporter, inner membrane subunit {ECO:0000313|EMBL:BAO28964.1}; TaxID=1223802 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Sulfuritalea.;" source="Sulfuritalea hydrogenivorans sk43H.;"
SCN18_25_1_16_R1_B_scaffold_579_6
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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6098..7702
DNA (1605bp) protein (535aa)
ABC-type uncharacterized transport system, duplicated ATPase component protein n=1 Tax=Herbaspirillum seropedicae (strain SmR1) RepID=D8IPK3_HERSS
ABC transporter ATPase
ABC-type uncharacterized transport system, duplicated ATPase component protein {ECO:0000313|EMBL:ADJ64900.1}; TaxID=757424 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum seropedicae (strain SmR1).;"
SCN18_25_1_16_R1_B_scaffold_579_7
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(7887..9794)
DNA (1908bp) protein (636aa)
Transglycosylase SLT domain protein n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RWR9_9BURK
Transglycosylase SLT domain protein {ECO:0000313|EMBL:EFV95173.1}; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia.;" source="Lautropia mirabilis ATCC 51599.;"
lytic transglycosylase
SCN18_25_1_16_R1_B_scaffold_579_8
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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10150..10941
DNA (792bp) protein (264aa)
Uncharacterized protein n=1 Tax=Cupriavidus taiwanensis (strain R1 / LMG 19424) RepID=B3R1Y1_CUPTR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAQ69937.1}; TaxID=164546 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus taiwanensis (strain R1 / LMG 19424) (Ralstonia taiwanensis; (strain LMG 19424)).;"
SCN18_25_1_16_R1_B_scaffold_579_9
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(10938..12404)
DNA (1467bp) protein (489aa)
xylC; benzaldehyde dehydrogenase (EC:1.2.1.28)
Probable benzaldehyde dehydrogenase (NAD+) n=1 Tax=Azoarcus sp. (strain BH72) RepID=A1K8D5_AZOSB
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
SCN18_25_1_16_R1_B_scaffold_579_10
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(12452..13582)
DNA (1131bp) protein (377aa)
Acyl-CoA dehydrogenase-like id=4949658 bin=GWA2_Methylomirabilis_73_35 species=Marinobacter nanhaiticus genus=Marinobacter taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
acyl-CoA dehydrogenase, middle domain protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
SCN18_25_1_16_R1_B_scaffold_579_11
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(13621..14808)
DNA (1188bp) protein (396aa)
Acyl-CoA dehydrogenase n=1 Tax=Alcanivorax hongdengensis A-11-3 RepID=L0WFP0_9GAMM
acyl-CoA dehydrogenase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
SCN18_25_1_16_R1_B_scaffold_579_12
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(14812..16344)
DNA (1533bp) protein (511aa)
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II n=1 Tax=Bradyrhizobium sp. WSM1253 RepID=I2QDG7_9BRAD
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II {ECO:0000313|EMBL:EIG57823.1}; TaxID=319003 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM1253.;"
AMP-dependent synthetase and ligase
SCN18_25_1_16_R1_B_scaffold_579_13
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(16341..16757)
DNA (417bp) protein (139aa)
Putative nucleic-acid-binding protein containing a Zn-ribbon n=1 Tax=Bradyrhizobium sp. WSM1253 RepID=I2QDG8_9BRAD
hypothetical protein
Tax=RBG_16_Betaproteobacteria_64_18_curated
SCN18_25_1_16_R1_B_scaffold_579_14
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(16754..17932)
DNA (1179bp) protein (393aa)
thiolase n=1 Tax=Amorphus coralli RepID=UPI0003612FD0
thiolase
Tax=RBG_16_Betaproteobacteria_64_18_curated
SCN18_25_1_16_R1_B_scaffold_579_15
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(17937..18956)
DNA (1020bp) protein (340aa)
putative extra-cytoplasmic solute receptor
Uncharacterized protein id=2165428 bin=GWA2_Polynucleobacter_45_21 species=beta proteobacterium CB genus=unknown taxon_order=unknown taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Polynucleobacter_45_21 organism_group=Betaproteobacteria
Tax=GWA2_Polynucleobacter_45_21_curated
SCN18_25_1_16_R1_B_scaffold_579_16
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(19051..20028)
DNA (978bp) protein (326aa)
Uncharacterized protein n=1 Tax=Ralstonia pickettii DTP0602 RepID=U3QSP7_RALPI
Tricarboxylate transport protein TctC
Cupriavidus basilensis strain 4G11 chromosome secondary, complete sequence {ECO:0000313|EMBL:AJG24295.1}; TaxID=68895 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus basilensis.;"
SCN18_25_1_16_R1_B_scaffold_579_17
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20044..21567)
DNA (1524bp) protein (508aa)
hypothetical protein n=1 Tax=Amorphus coralli RepID=UPI000377CFEF
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II {ECO:0000313|EMBL:EIG57823.1}; TaxID=319003 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM1253.;"
AMP-dependent synthetase and ligase
SCN18_25_1_16_R1_B_scaffold_579_18
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21596..22012)
DNA (417bp) protein (139aa)
hypothetical protein n=1 Tax=Amorphus coralli RepID=UPI00038281E4
hypothetical protein
Tax=RBG_16_Betaproteobacteria_64_18_curated
SCN18_25_1_16_R1_B_scaffold_579_19
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(22025..23194)
DNA (1170bp) protein (390aa)
thiolase n=1 Tax=Mesorhizobium sp. WSM4349 RepID=UPI00037AEA66
thiolase
Tax=RBG_16_Betaproteobacteria_64_18_curated
SCN18_25_1_16_R1_B_scaffold_579_20
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23204..24016)
DNA (813bp) protein (271aa)
Enoyl-CoA hydratase/carnithine racemase n=1 Tax=Bradyrhizobium sp. WSM1253 RepID=I2QDH0_9BRAD
Enoyl-CoA hydratase/carnithine racemase {ECO:0000313|EMBL:EIG57826.1}; TaxID=319003 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM1253.;"
enoyl-CoA hydratase/isomerase
SCN18_25_1_16_R1_B_scaffold_579_21
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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24410..24967
DNA (558bp) protein (186aa)
Transcriptional regulator, TetR family n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QJX3_NITHX
Uncharacterized protein {ECO:0000313|EMBL:KIZ47849.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
TetR family transcriptional regulator
SCN18_25_1_16_R1_B_scaffold_579_22
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(25054..26274)
DNA (1221bp) protein (407aa)
cyclopropane-fatty-acyl-phospholipid synthase (EC:2.1.1.79)
Cyclopropane-fatty-acyl-phospholipid synthase n=1 Tax=Burkholderia sp. (strain CCGE1002) RepID=D5WCC7_BURSC
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_19_curated
SCN18_25_1_16_R1_B_scaffold_579_23
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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26367..26819
DNA (453bp) protein (151aa)
Ribonuclease H {ECO:0000256|HAMAP-Rule:MF_00042, ECO:0000256|SAAS:SAAS00016437}; Short=RNase H {ECO:0000256|HAMAP-Rule:MF_00042};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00042, ECO:0000256|SAAS:SAAS00016437};; TaxID=305700 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. 27.;"
rnhA2; ribonuclease H (EC:3.1.26.4)
Ribonuclease H n=2 Tax=Thauera RepID=N6XRR5_9RHOO
SCN18_25_1_16_R1_B_scaffold_579_24
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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26902..27183
DNA (282bp) protein (94aa)
Displaying 24 items

View Taxonomy