ggKbase home page

SCN18_25_1_16_R1_B_scaffold_235_18

Organism: SCN18_25_1_16_R1_B_SCNPILOT_EXPT_750_BF_Burkholderiales_68_35_70_17

near complete RP 47 / 55 MC: 1 BSCG 51 / 51 ASCG 14 / 38 MC: 1
Location: comp(18519..19442)

Top 3 Functional Annotations

Value Algorithm Source
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI0003720F0A similarity UNIREF
DB: UNIREF100
  • Identity: 45.3
  • Coverage: 287.0
  • Bit_score: 239
  • Evalue 2.90e-60
Uncharacterized protein {ECO:0000313|EMBL:KJC33608.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 42.1
  • Coverage: 297.0
  • Bit_score: 222
  • Evalue 6.80e-55
LysR family transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 41.4
  • Coverage: 290.0
  • Bit_score: 209
  • Evalue 7.00e-52

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

SCNPILOT_EXPT_750_BF_Burkholderiales_68_35 → SCNPILOT_EXPT_750_BF_Burkholderiales_68_35 → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 924
ATGGGAAATGCCAGGCTGAGCGACCTGATCGACCTGTGCCTTGTTGTTGAATATGGTGGAATCGGTGCTGCTGCCAGGGCGGTCAGCCGGCCCAAGTCCAGCCTCAGCCTTGCCATCCGGCGCCTCGAGGATGATTTGTCCGTTCGCCTCATGGATCGGACCAGGCGCCGCTTCCATTTGACGGACCGGGGGCGCACCCTTCACGAAAACATCGGTCCGTTGCTGGCGCAGCTGGATCACATCACCTCCGACTTCCGGGCATCCAGCGGCCAGGTCGCGGGCTCATTGCGGATCGCGGCCCCCTATGAATTCGGCGCTCATCATCTGGCCCGCACCGTCAGAAACCTGGCGTCACGGAATCCGCATCTGACGATTACCCTGGACGTGCAATACGCGCCCATAAAGGAATTGTTCGGCAGCGGCTACGACGTCGTCTTCGTCATGACCAATGGGAATCTGGCGGATTCCGGCGTAGTGTCGTGTCGGGCTTTCATGCTGGAAAGAGGACTATTTGCTTCGCCGGCATTCCTCGAACGTCATCCACGCATACGGACACCGGAGGATCTTTCAAAAATACCGCTGATCGCCTCGTCCCAGGATCTGCAGTGGCGATTCACGGATAAACACGAGCGAATAATCGACGTGCCGATTCCCGGTTCGCATTTCAGAAGCTCGAATGCCGACGCACGCAGGCAGGTGGCCATCGATGGCCTCGGAGTAACTCGTACGGTGGCGACCTTCTGCAGCGAGGCGGTTCGTTCGGGGAGCCTGGCAAGGGTGTTGCCGGAATTCCATTGTGCGCCGCTATGCGTTTACGGAGTCATCAACGAGCGGCGGCTCATGCCGGCCACGGTGAAAGCGCTGTTCGATGAGCTCGAAAGGATTTCTCCGGACCTGTTCATCGAAACGCATGGCTCCGGCTGA
PROTEIN sequence
Length: 308
MGNARLSDLIDLCLVVEYGGIGAAARAVSRPKSSLSLAIRRLEDDLSVRLMDRTRRRFHLTDRGRTLHENIGPLLAQLDHITSDFRASSGQVAGSLRIAAPYEFGAHHLARTVRNLASRNPHLTITLDVQYAPIKELFGSGYDVVFVMTNGNLADSGVVSCRAFMLERGLFASPAFLERHPRIRTPEDLSKIPLIASSQDLQWRFTDKHERIIDVPIPGSHFRSSNADARRQVAIDGLGVTRTVATFCSEAVRSGSLARVLPEFHCAPLCVYGVINERRLMPATVKALFDELERISPDLFIETHGSG*