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SCN18_25_1_16_R1_B_scaffold_301

Search features with annotation key words

Displaying items 1-30 of 50 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_1_16_R1_B_scaffold_301_1
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35..520)
DNA (486bp) protein (162aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036D6E88
3-demethylubiquinone-9 3-methyltransferase
3-demethylubiquinone-9 3-methyltransferase {ECO:0000313|EMBL:ABS65102.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCN18_25_1_16_R1_B_scaffold_301_2
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(825..1490)
DNA (666bp) protein (222aa)
Transcriptional regulator n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1INH5_9BRAD
Transcriptional regulator {ECO:0000313|EMBL:ERF84244.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
transcriptional regulatory protein TetR family
SCN18_25_1_16_R1_B_scaffold_301_3
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1595..2239
DNA (645bp) protein (215aa)
Hypothetical glutathione S-transferase like protein n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89EB2_BRADU
glutathione S-transferase
Putative glutathione S-transferase {ECO:0000313|EMBL:KGJ63537.1}; TaxID=754504 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens SEMIA 5080.;"
SCN18_25_1_16_R1_B_scaffold_301_4
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2459..2929)
DNA (471bp) protein (157aa)
4-hydroxybenzoyl-CoA thioesterase n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SP15_NITWN
4-hydroxybenzoyl-CoA thioesterase
4-hydroxybenzoyl-CoA thioesterase {ECO:0000313|EMBL:ABA05976.1}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
SCN18_25_1_16_R1_B_scaffold_301_5
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2926..3972)
DNA (1047bp) protein (349aa)
Holliday junction ATP-dependent DNA helicase RuvB {ECO:0000256|HAMAP-Rule:MF_00016}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00016};; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
ruvB; Holliday junction DNA helicase RuvB (EC:3.1.22.4)
Holliday junction ATP-dependent DNA helicase RuvB n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QFJ3_9BRAD
SCN18_25_1_16_R1_B_scaffold_301_6
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3975..4499)
DNA (525bp) protein (175aa)
Uncharacterized protein n=2 Tax=Oligotropha carboxidovorans RepID=B6JIZ5_OLICO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEI05538.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCN18_25_1_16_R1_B_scaffold_301_7
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4496..5113)
DNA (618bp) protein (206aa)
Holliday junction ATP-dependent DNA helicase RuvA {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058935}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058896};; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
Holliday junction DNA helicase RuvA n=1 Tax=Afipia birgiae RepID=UPI0002E73983
ruvA; holliday junction ATP-dependent DNA helicase RuvA
SCN18_25_1_16_R1_B_scaffold_301_8
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5287..5799)
DNA (513bp) protein (171aa)
ruvC; Holliday junction resolvase (EC:3.1.22.4)
Crossover junction endodeoxyribonuclease RuvC {ECO:0000255|HAMAP-Rule:MF_00034}; EC=3.1.22.4 {ECO:0000255|HAMAP-Rule:MF_00034};; Holliday junction nuclease RuvC {ECO:0000255|HAMAP-Rule:MF_00034}; Holliday junction resolvase RuvC {ECO:0000255|HAMAP-Rule:MF_00034}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
Crossover junction endodeoxyribonuclease RuvC n=2 Tax=Nitrobacter hamburgensis RepID=RUVC_NITHX
SCN18_25_1_16_R1_B_scaffold_301_9
CN-SCN_Phenylobacterium_14x, CN-SCN_Phenylobacterium_14x, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5863..6597)
DNA (735bp) protein (245aa)
Oxidoreductase n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89UC2_BRADU
3-oxoacyl-ACP reductase {ECO:0000313|EMBL:KJC60660.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
oxidoreductase
SCN18_25_1_16_R1_B_scaffold_301_10
CN-SCN_Phenylobacterium_14x, CN-SCN_Phenylobacterium_14x, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6737..7516
DNA (780bp) protein (260aa)
3-oxoacyl-ACP reductase n=1 Tax=Bradyrhizobium japonicum RepID=UPI0003620BE3
3-oxoacyl-ACP reductase {ECO:0000313|EMBL:KJC54540.1}; TaxID=1615890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP849.;"
D-beta-hydroxybutyrate dehydrogenase
SCN18_25_1_16_R1_B_scaffold_301_11
SCNPILOT_CONT_750_BF_Rhodospirillales_70_18, SCNPILOT_CONT_750_BF_Rhodospirillales_70_18, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7720..8607
DNA (888bp) protein (296aa)
alpha-ketoglutarate-dependent 2,4-dichlorophenoxyacetate dioxygenase (EC:1.14.11.17)
DNA primase/helicase n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HI54_9BRAD
DNA primase/helicase {ECO:0000313|EMBL:ERF84121.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
SCN18_25_1_16_R1_B_scaffold_301_12
unknown

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8745..8993
DNA (249bp) protein (83aa)

This feature has no annotations

SCN18_25_1_16_R1_B_scaffold_301_13
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9187..10644)
DNA (1458bp) protein (486aa)
NADH/NADPH-dependent glutamate synthase small subunit n=1 Tax=Bradyrhizobium sp. WSM471 RepID=H5YKR5_9BRAD
NADH/NADPH-dependent glutamate synthase small subunit {ECO:0000313|EMBL:EHR06015.1}; TaxID=319017 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM471.;"
gltD; glutamate synthase subunit beta
SCN18_25_1_16_R1_B_scaffold_301_14
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10648..15447)
DNA (4800bp) protein (1600aa)
glutamate synthase (EC:1.4.7.1)
glutamate synthase n=1 Tax=Bradyrhizobium japonicum RepID=UPI0003820A41
Glutamate synthase {ECO:0000313|EMBL:KGT81035.1}; TaxID=375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum.;"
SCN18_25_1_16_R1_B_scaffold_301_15
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15998..16474)
DNA (477bp) protein (159aa)
Heat shock protein Hsp20 n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QP62_NITHX
heat shock protein Hsp20
Heat shock protein Hsp20 {ECO:0000313|EMBL:ABE61985.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCN18_25_1_16_R1_B_scaffold_301_16
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16672..17616
DNA (945bp) protein (315aa)
Alpha/beta hydrolase n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2IRE3_RHOP2
alpha/beta hydrolase
Alpha/beta hydrolase {ECO:0000313|EMBL:ABD09217.1}; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
SCN18_25_1_16_R1_B_scaffold_301_17
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17785..18420
DNA (636bp) protein (212aa)
lysine transporter LysE n=1 Tax=Bradyrhizobium elkanii RepID=UPI0002EA62EF
lysine exporter protein LysE/YggA
Bradyrhizobium elkanii strain UASWS1015 Contig166, whole genome shotgun sequence {ECO:0000313|EMBL:KIU51252.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
SCN18_25_1_16_R1_B_scaffold_301_18
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18423..19253)
DNA (831bp) protein (277aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2IRF8_RHOP2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD09202.1}; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
SCN18_25_1_16_R1_B_scaffold_301_19
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19263..20150
DNA (888bp) protein (296aa)
Transcriptional regulator, LysR family n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q21B87_RHOPB
LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ABD86349.1}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCN18_25_1_16_R1_B_scaffold_301_20
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20302..21084)
DNA (783bp) protein (261aa)
Inositol monophosphatase family protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7D370_BRAJP
inositol monophosphatase
Inositol monophosphatase family protein {ECO:0000313|EMBL:BAL06930.1}; TaxID=1037409 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum USDA 6.;"
SCN18_25_1_16_R1_B_scaffold_301_21
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21770..22657)
DNA (888bp) protein (296aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1IIW1_9BRAD
Bradyrhizobium elkanii strain UASWS1015 Contig166, whole genome shotgun sequence {ECO:0000313|EMBL:KIU51247.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
N-formylglutamate amidohydrolase
SCN18_25_1_16_R1_B_scaffold_301_22
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22956..23315
DNA (360bp) protein (120aa)
Response regulator receiver domain protein (CheY-like) n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q21B84_RHOPB
Marine sediment metagenome DNA, contig: S03H2_L07863 {ECO:0000313|EMBL:GAH31875.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
response regulator receiver domain-containing protein
SCN18_25_1_16_R1_B_scaffold_301_23
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23320..23772)
DNA (453bp) protein (151aa)
Integral membrane protein n=2 Tax=Oligotropha carboxidovorans RepID=B6JB14_OLICO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEI07690.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCN18_25_1_16_R1_B_scaffold_301_trna_1
unknown

Not on your lists

24025..24096
DNA (72bp)
transferRNA Val
SCN18_25_1_16_R1_B_scaffold_301_24
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24437..26053)
DNA (1617bp) protein (539aa)
Resolvase n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SQ51_NITWN
DNA-invertase hin {ECO:0000313|EMBL:CEG06946.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
resolvase
SCN18_25_1_16_R1_B_scaffold_301_25
SCNPILOT_CONT_750_BF_Rhodospirillales_70_18, SCNPILOT_CONT_750_BF_Rhodospirillales_70_18, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26050..26286)
DNA (237bp) protein (79aa)
Uncharacterized protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WU61_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EAQ36474.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
hypothetical protein
SCN18_25_1_16_R1_B_scaffold_301_26
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27666..28181)
DNA (516bp) protein (172aa)
Uncharacterized protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WSU4_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EAQ36910.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
hypothetical protein
SCN18_25_1_16_R1_B_scaffold_301_27
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28274..28729)
DNA (456bp) protein (152aa)
Heat shock protein Hsp20 n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SNF5_NITWN
heat shock protein Hsp20
Heat shock protein Hsp20 {ECO:0000313|EMBL:ABA06186.1}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
SCN18_25_1_16_R1_B_scaffold_301_28
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29288..29779
DNA (492bp) protein (164aa)
hypothetical protein n=1 Tax=Rhizobium loti RepID=UPI00037140F1
Tryptophan-rich sensory protein {ECO:0000313|EMBL:CDX46922.1}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
tryptophan-rich sensory protein
SCN18_25_1_16_R1_B_scaffold_301_29
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29797..31248
DNA (1452bp) protein (484aa)
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI000363812E
Deoxyribodipyrimidine photolyase {ECO:0000313|EMBL:KEA56552.1}; TaxID=95486 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia cenocepacia.;"
putative DNA photolyase
Displaying items 1-30 of 50 in total

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