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SCN18_25_1_16_R1_B_scaffold_535

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Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_1_16_R1_B_scaffold_535_1
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..146)
DNA (144bp) protein (48aa)
High-affinity branched-chain amino acid transport protein (ABC transporter ATP-binding protein) n=1 Tax=Bradyrhizobium sp. (strain ORS278) RepID=A4YR37_BRASO
high-affinity branched-chain amino acid ABC transporter ATP-binding protein
High-affinity branched-chain amino acid transport protein (ABC transporter ATP-binding protein) {ECO:0000313|EMBL:CCD96220.1}; TaxID=566679 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. ORS 375.;"
SCN18_25_1_16_R1_B_scaffold_535_2
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(130..861)
DNA (732bp) protein (244aa)
ABC-type branched-chain amino acid transport system, ATPase component n=1 Tax=Bradyrhizobium sp. YR681 RepID=J2W654_9BRAD
ABC-type branched-chain amino acid transport system, ATPase component {ECO:0000313|EMBL:EJN14157.1}; TaxID=1144344 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. YR681.;"
amino acid ABC transporter ATP-binding protein
SCN18_25_1_16_R1_B_scaffold_535_3
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(858..1844)
DNA (987bp) protein (329aa)
Inner-membrane translocator n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2ITZ7_RHOP2
inner-membrane translocator
Inner-membrane translocator {ECO:0000313|EMBL:ABD08313.1}; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
SCN18_25_1_16_R1_B_scaffold_535_4
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1844..2722)
DNA (879bp) protein (293aa)
Inner-membrane translocator n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07QZ1_RHOP5
inner-membrane translocator
Inner-membrane translocator {ECO:0000313|EMBL:ABJ05643.1}; Flags: Precursor;; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
SCN18_25_1_16_R1_B_scaffold_535_5
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2963..4207)
DNA (1245bp) protein (415aa)
Putative branched-chain amino acid ABC transporter substrate-binding protein n=1 Tax=Bradyrhizobium oligotrophicum S58 RepID=M4ZBG5_9BRAD
Amino acid ABC transporter substrate-binding protein {ECO:0000313|EMBL:KIZ34233.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
putative branched-chain amino acid ABC transporter substrate-binding protein
SCN18_25_1_16_R1_B_scaffold_535_6
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4297..5118)
DNA (822bp) protein (274aa)
UPF0317 protein RPC_1666 n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Y1666_RHOPB
hypothetical protein
UPF0317 protein RPC_1666 {ECO:0000255|HAMAP-Rule:MF_01830}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCN18_25_1_16_R1_B_scaffold_535_7
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5232..6128
DNA (897bp) protein (299aa)
Transcriptional regulator, LysR family n=2 Tax=Rhodopseudomonas palustris RepID=B3Q9J7_RHOPT
LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ACF00469.1}; TaxID=395960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain TIE-1).;"
SCN18_25_1_16_R1_B_scaffold_535_8
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6224..7474
DNA (1251bp) protein (417aa)
N-carbamoyl-beta-alanine amidohydrolase n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89R53_BRADU
Allantoate amidohydrolase {ECO:0000313|EMBL:KJC59248.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
amaB; allantoate amidohydrolase
SCN18_25_1_16_R1_B_scaffold_535_9
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7679..8758)
DNA (1080bp) protein (360aa)
Tartrate dehydrogenase n=1 Tax=Bradyrhizobium sp. S23321 RepID=I0GC06_9BRAD
tartrate dehydrogenase
Tartrate dehydrogenase {ECO:0000313|EMBL:BAL78293.1}; TaxID=335659 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. S23321.;"
SCN18_25_1_16_R1_B_scaffold_535_10
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9013..10266
DNA (1254bp) protein (418aa)
ABC transporter substrate-binding protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7DFS3_BRAJP
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KIZ40044.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
ABC transporter substrate-binding protein
SCN18_25_1_16_R1_B_scaffold_535_11
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10364..11239
DNA (876bp) protein (292aa)
Inner-membrane translocator n=2 Tax=Rhodopseudomonas palustris RepID=B3Q9J1_RHOPT
ABC transporter permease {ECO:0000313|EMBL:KIF66139.1}; TaxID=352211 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. AcH 505.;"
inner-membrane translocator
SCN18_25_1_16_R1_B_scaffold_535_12
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11241..12167
DNA (927bp) protein (309aa)
ABC transporter permease n=1 Tax=Bradyrhizobium elkanii RepID=UPI0002DC1CDD
ABC transporter permease
Bradyrhizobium elkanii strain UASWS1015 Contig184, whole genome shotgun sequence {ECO:0000313|EMBL:KIU45279.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
SCN18_25_1_16_R1_B_scaffold_535_13
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12164..13645
DNA (1482bp) protein (494aa)
ABC transporter ATP-binding protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI00037D0B7D
ABC transporter ATP-binding protein {ECO:0000313|EMBL:KIF66137.1}; TaxID=352211 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. AcH 505.;"
ABC transporter ATP-binding protein
SCN18_25_1_16_R1_B_scaffold_535_14
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13770..14546
DNA (777bp) protein (259aa)
Short chain dehydrogenase n=1 Tax=Bradyrhizobium oligotrophicum S58 RepID=M4ZB18_9BRAD
short chain dehydrogenase
Short chain dehydrogenase {ECO:0000313|EMBL:BAM91058.1}; TaxID=1245469 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium oligotrophicum S58.;"
SCN18_25_1_16_R1_B_scaffold_535_15
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14643..16055
DNA (1413bp) protein (471aa)
amidase (EC:3.5.1.4)
amidase n=1 Tax=Bradyrhizobium elkanii RepID=UPI00037E556D
Amidase {ECO:0000313|EMBL:KJC45848.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
SCN18_25_1_16_R1_B_scaffold_535_16
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16237..17205
DNA (969bp) protein (323aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8SP77_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EJU14599.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
diguanylate cyclase
SCN18_25_1_16_R1_B_scaffold_535_17
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17420..17629
DNA (210bp) protein (70aa)
ferredoxin n=1 Tax=Bradyrhizobium japonicum RepID=UPI0003707A05
ferredoxin
Bsl2907 protein {ECO:0000313|EMBL:BAC48171.1}; TaxID=224911 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC; 14792 / USDA 110).;"
SCN18_25_1_16_R1_B_scaffold_535_18
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17713..18912
DNA (1200bp) protein (400aa)
cytochrome P450 (EC:1.14.-.-)
Phosphatidylserine decarboxylase n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1H3F0_9BRAD
Cytochrome P450 {ECO:0000313|EMBL:KJC45852.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
SCN18_25_1_16_R1_B_scaffold_535_19
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18965..20191
DNA (1227bp) protein (409aa)
OsmC-like protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QJX4_NITHX
Osmotically inducible protein C {ECO:0000313|EMBL:KJC59267.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
OsmC-like protein
SCN18_25_1_16_R1_B_scaffold_535_20
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20196..21140
DNA (945bp) protein (315aa)
Fatty acid desaturase n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q13A19_RHOPS
Fatty acid desaturase {ECO:0000313|EMBL:KIZ35218.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
fatty acid desaturase
SCN18_25_1_16_R1_B_scaffold_535_21
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21234..22292)
DNA (1059bp) protein (353aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QJX2_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE63475.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCN18_25_1_16_R1_B_scaffold_535_22
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22541..24577)
DNA (2037bp) protein (679aa)
Phenylacetic acid degradation protein paaN n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2ITX9_RHOP2
Phenylacetic acid degradation protein paaN {ECO:0000313|EMBL:ABD08331.1}; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase
SCN18_25_1_16_R1_B_scaffold_535_23
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24872..25288
DNA (417bp) protein (139aa)
Phenylacetic acid degradation protein with thioesterase/thiol ester dehydrase-isomerase domain n=1 Tax=Bradyrhizobium sp. (strain ORS278) RepID=A4YR20_BRASO
paaI; phenylacetic acid degradation protein
Phenylacetic acid degradation protein with thioesterase/thiol ester dehydrase-isomerase domain {ECO:0000313|EMBL:CAL76346.1}; TaxID=114615 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain ORS278).;"
SCN18_25_1_16_R1_B_scaffold_535_24
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25310..26638
DNA (1329bp) protein (443aa)
Phenylacetate-coenzyme A ligase {ECO:0000256|PIRNR:PIRNR006444}; EC=6.2.1.30 {ECO:0000256|PIRNR:PIRNR006444};; Phenylacetyl-CoA ligase {ECO:0000256|PIRNR:PIRNR006444}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
phenylacetate-CoA ligase (EC:6.2.1.30)
phenylacetate-CoA ligase n=1 Tax=Bradyrhizobium elkanii RepID=UPI0003824A88
SCN18_25_1_16_R1_B_scaffold_535_25
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26798..28234
DNA (1437bp) protein (479aa)
indole acetimide hydrolase (EC:3.5.1.-)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1IKG3_9BRAD
Indole acetimide hydrolase {ECO:0000313|EMBL:KJC54994.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
SCN18_25_1_16_R1_B_scaffold_535_26
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28407..28886
DNA (480bp) protein (160aa)
S-adenosylmethionine decarboxylase proenzyme {ECO:0000256|HAMAP-Rule:MF_00464}; Short=AdoMetDC {ECO:0000256|HAMAP-Rule:MF_00464};; Short=SAMDC {ECO:0000256|HAMAP-Rule:MF_00464};; EC=4.1.1.50 {ECO:0000256|HAMAP-Rule:MF_00464};; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
S-adenosylmethionine decarboxylase proenzyme n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2LIE5_9RHIZ
S-adenosylmethionine decarboxylase
SCN18_25_1_16_R1_B_scaffold_535_27
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28883..29752
DNA (870bp) protein (290aa)
Spermidine synthase n=1 Tax=Nitratireductor indicus C115 RepID=K2P928_9RHIZ
Polyamine aminopropyltransferase {ECO:0000256|HAMAP-Rule:MF_00198}; Putrescine aminopropyltransferase {ECO:0000256|HAMAP-Rule:MF_00198}; Spermidine synthase {ECO:0000256|HAMAP-Rule:MF_00198}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
spermidine synthase
SCN18_25_1_16_R1_B_scaffold_535_28
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29763..30050)
DNA (288bp) protein (96aa)
Phenylacetate-CoA oxygenase/reductase, PaaK subunit n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q13A25_RHOPS
phenylacetate-CoA oxygenase/reductase subunit PaaK
Phenylacetate-CoA oxygenase/reductase, PaaK subunit {ECO:0000313|EMBL:ABE39064.1}; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
Displaying 28 items

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