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SCN18_25_1_16_R1_B_scaffold_928

Search features with annotation key words

Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_1_16_R1_B_scaffold_928_1
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..936
DNA (936bp) protein (312aa)
Iron-containing alcohol dehydrogenase n=1 Tax=Rhizobium sp. (strain NGR234) RepID=C3MI52_RHISN
iron-containing alcohol dehydrogenase
Iron-containing alcohol dehydrogenase {ECO:0000313|EMBL:ACP24400.1}; TaxID=394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium sp. (strain NGR234).;"
SCN18_25_1_16_R1_B_scaffold_928_2
SCN_Comamonadaceae_20x, SCN_Comamonadaceae_20x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1026..2483
DNA (1458bp) protein (486aa)
Succinate-semialdehyde dehydrogenase {ECO:0000313|EMBL:KJF70337.1}; EC=1.2.1.16 {ECO:0000313|EMBL:KJF70337.1};; TaxID=1585697 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. KFB 330.;"
succinate-semialdehyde dehydrogenase (NADP+) protein (EC:1.2.1.79)
Succinate-semialdehyde dehydrogenase [NADP+] n=1 Tax=Rhizobium sp. RepID=L0NGK5_RHISP
SCN18_25_1_16_R1_B_scaffold_928_3
CN-SCN_Sphingomonas_18x, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2854..3831
DNA (978bp) protein (326aa)
Transcriptional regulator, AraC family n=1 Tax=Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) RepID=D5VE36_CAUST
AraC family transcriptional regulator
Transcriptional regulator, AraC family {ECO:0000313|EMBL:ADG08736.1}; TaxID=509190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC; 15250 / LMG 17158 / TK0059) (Mycoplana segnis).;"
SCN18_25_1_16_R1_B_scaffold_928_4
SCNPILOT_EXPT_1000_BF_Mesorhizobium_61_14, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4214..5161
DNA (948bp) protein (316aa)
Alpha/beta hydrolase fold protein n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VRH0_POLNA
alpha/beta hydrolase fold protein
Alpha/beta hydrolase fold protein {ECO:0000313|EMBL:ABM38248.1}; Flags: Precursor;; TaxID=365044 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas naphthalenivorans (strain CJ2).;"
SCN18_25_1_16_R1_B_scaffold_928_5
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5246..6022
DNA (777bp) protein (259aa)
Regulatory protein, AttJ n=1 Tax=uncultured bacterium RepID=K2A0X6_9BACT
Transcriptional regulator, IclR family {ECO:0000313|EMBL:AKI03443.1}; TaxID=1620421 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. IMCC20628.;"
iclR; transcriptional regulator
SCN18_25_1_16_R1_B_scaffold_928_6
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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6524..8053
DNA (1530bp) protein (510aa)
ISPsy20 transposase IstA n=1 Tax=uncultured bacterium RepID=C6KTX0_9BACT
ISPsy20 transposase IstA {ECO:0000313|EMBL:BAH89418.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
transposase
SCN18_25_1_16_R1_B_scaffold_928_7
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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8043..8390
DNA (348bp) protein (116aa)
ISPsy20 transposase IstB n=1 Tax=uncultured bacterium RepID=C6KTX1_9BACT
ISPsy20 transposase IstB {ECO:0000313|EMBL:BAH89419.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
istB-like ATP binding family protein 1
SCN18_25_1_16_R1_B_scaffold_928_8
SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, Bacteria

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comp(8410..10479)
DNA (2070bp) protein (690aa)
Site-specific recombinase, DNA invertase Pin n=1 Tax=Bradyrhizobium sp. WSM471 RepID=H5YC15_9BRAD
Bradyrhizobium elkanii strain UASWS1015 Contig133, whole genome shotgun sequence {ECO:0000313|EMBL:KIU53789.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
resolvase-like protein
SCN18_25_1_16_R1_B_scaffold_928_9
unknown

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comp(10460..10657)
DNA (198bp) protein (66aa)

This feature has no annotations

SCN18_25_1_16_R1_B_scaffold_928_10
SCNPILOT_EXPT_750_BF_Plasmid_64_137, SCNPILOT_EXPT_750_BF_Plasmid_64_137, SCNPILOT_EXPT_750_BF_Plasmid_64_137, SCNPILOT_EXPT_750_BF_Plasmid_64_137, SCNPILOT_EXPT_750_BF_Plasmid_64_137, Plasmid-like

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11021..11425
DNA (405bp) protein (135aa)
transposase IS100 n=1 Tax=Xanthomonas sp. M97 RepID=UPI0003A6A91C
Insertion sequence IS21 putative ATP-binding protein {ECO:0000313|EMBL:GAJ37832.1}; TaxID=1126627 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DOA9.;"
dnaC; DNA replication protein
SCN18_25_1_16_R1_B_scaffold_928_11
SCNPILOT_EXPT_500_BF_STEP10_Armatimonadetes_55_34, SCNPILOT_EXPT_500_BF_STEP10_Armatimonadetes_55_34, SCNPILOT_EXPT_500_BF_STEP10_Armatimonadetes_55_34, SCNPILOT_EXPT_500_BF_STEP10_Armatimonadetes_55_34, SCNPILOT_EXPT_500_BF_STEP10_Armatimonadetes_55_34, Bacteria

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comp(11978..12532)
DNA (555bp) protein (185aa)
Membrane protein n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FB45_9RHIZ
Membrane protein {ECO:0000313|EMBL:EWY38538.1}; TaxID=1385369 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
membrane protein
SCN18_25_1_16_R1_B_scaffold_928_12
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12710..13981)
DNA (1272bp) protein (424aa)
catalase (EC:1.11.1.6)
Non-heme manganese-containing catalase {ECO:0000313|EMBL:CCD86090.1}; EC=1.11.1.6 {ECO:0000313|EMBL:CCD86090.1};; TaxID=115808 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. ORS 285.;"
Non-heme manganese-containing catalase n=1 Tax=Bradyrhizobium sp. ORS 285 RepID=H0RVW3_9BRAD
SCN18_25_1_16_R1_B_scaffold_928_13
SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14164..14316)
DNA (153bp) protein (51aa)
Transposase n=1 Tax=Bradyrhizobium sp. WSM1253 RepID=I2QBE1_9BRAD
Transposase {ECO:0000313|EMBL:EIG57097.1}; TaxID=319003 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM1253.;"
Transposase, mutator type
SCN18_25_1_16_R1_B_scaffold_928_14
SCNpilot_P_inoc_Xanthomonadales_63_13, SCNpilot_P_inoc_Xanthomonadales_63_13, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14584..14820
DNA (237bp) protein (79aa)
UPI0003CDF0D3 related cluster n=1 Tax=unknown RepID=UPI0003CDF0D3
reverse transcriptase/maturase family protein
Uncharacterized protein {ECO:0000313|EMBL:CDX25044.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
SCN18_25_1_16_R1_B_scaffold_928_15
unknown

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comp(14850..14972)
DNA (123bp) protein (41aa)

This feature has no annotations

SCN18_25_1_16_R1_B_scaffold_928_16
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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15351..15503
DNA (153bp) protein (51aa)
Bsr7707 protein n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89CT8_BRADU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KGJ71344.1}; TaxID=754504 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens SEMIA 5080.;"
Displaying 16 items

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