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SCN18_25_1_16_R1_B_scaffold_1296

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_1_16_R1_B_scaffold_1296_1
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..537)
DNA (537bp) protein (179aa)
D-amino acid aminotransferase {ECO:0000313|EMBL:KIZ39272.1}; EC=2.6.1.21 {ECO:0000313|EMBL:KIZ39272.1};; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
D-amino acid aminotransferase (EC:2.6.1.21)
D-amino-acid transaminase n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PGI1_9BRAD
SCN18_25_1_16_R1_B_scaffold_1296_2
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(566..1936)
DNA (1371bp) protein (457aa)
Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q137B8_RHOPS
two component, sigma54 specific, transcriptional regulator, Fis family
Two component, sigma54 specific, transcriptional regulator, Fis family {ECO:0000313|EMBL:ABE39821.1}; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
SCN18_25_1_16_R1_B_scaffold_1296_3
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1929..4241)
DNA (2313bp) protein (771aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
Multi-sensor signal transduction histidine kinase n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q214Q7_RHOPB
multi-sensor signal transduction histidine kinase
SCN18_25_1_16_R1_B_scaffold_1296_4
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4422..5864)
DNA (1443bp) protein (481aa)
Nitrogen metabolism transcriptional regulator, NtrC, Fis family n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07MY9_RHOP5
nitrogen metabolism transcriptional regulator NtrC
Nitrogen assimilation regulatory protein {ECO:0000313|EMBL:EKS39861.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCN18_25_1_16_R1_B_scaffold_1296_5
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5873..7045)
DNA (1173bp) protein (391aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
Nitrogen regulation protein ntrB n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1IPH9_9BRAD
signal transduction histidine kinase, nitrogen specific, NtrB
SCN18_25_1_16_R1_B_scaffold_1296_6
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7042..8055)
DNA (1014bp) protein (338aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
tRNA-dihydrouridine synthase n=1 Tax=Bradyrhizobium elkanii RepID=UPI0003828A04
putative tRNA-dihydrouridine synthase, Nitrogen regulation protein NifR3
SCN18_25_1_16_R1_B_scaffold_1296_7
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8335..9522
DNA (1188bp) protein (396aa)
Bifunctional enzyme IspD/IspF {ECO:0000255|HAMAP-Rule:MF_01520}; Includes:; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase {ECO:0000255|HAMAP-Rule:MF_01520}; EC=2.7.7.60 {ECO:0000255|HAMAP-Rule:MF_01520};; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase {ECO:0000255|HAMAP-Rule:MF_01520}; MEP cytidylyltransferase {ECO:0000255|HAMAP-Rule:MF_01520}; Short=MCT {ECO:0000255|HAMAP-Rule:MF_01520};; Includes:; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase {ECO:0000255|HAMAP-Rule:MF_01520}; Short=MECDP-synthase {ECO:0000255|HAMAP-Rule:MF_01520};; Short=MECPP-synthase {ECO:0000255|HAMAP-Rule:MF_01520};; Short=MECPS {ECO:0000255|HAMAP-Rule:MF_01520};; EC=4.6.1.12 {ECO:0000255|HAMAP-Rule:MF_01520};; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
Bifunctional enzyme IspD/IspF n=2 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=ISPDF_NITHX
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
SCN18_25_1_16_R1_B_scaffold_1296_8
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9519..9671
DNA (153bp) protein (51aa)
UDP-glucose 4-epimerase (EC:5.1.3.2)
UDP-glucose 4-epimerase {ECO:0000313|EMBL:CDM25724.1}; EC=5.1.3.2 {ECO:0000313|EMBL:CDM25724.1};; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
SCN18_25_1_16_R1_B_scaffold_1296_9
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9668..10561
DNA (894bp) protein (298aa)
Putative glycosyltransferase n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GQX6_PUSST
Glycosyl transferase, group 1 family protein
Glycosyl transferase, group 1 family protein {ECO:0000313|EMBL:CDM25723.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
Displaying 9 items

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