ggKbase home page

SCN18_13_7_16_R1_B_scaffold_2475

Search features with annotation key words

Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_13_7_16_R1_B_scaffold_2475_1
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


2..262
DNA (261bp) protein (87aa)
50S ribosomal protein L6 n=1 Tax=Afipia felis ATCC 53690 RepID=K8NB50_AFIFE
rplF; 50S ribosomal protein L6
50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365, ECO:0000256|RuleBase:RU003870}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
SCN18_13_7_16_R1_B_scaffold_2475_2
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


274..636
DNA (363bp) protein (121aa)
50S ribosomal protein L18 n=2 Tax=Bradyrhizobiaceae RepID=F7QPY0_9BRAD
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
rplR; 50S ribosomal protein L18
SCN18_13_7_16_R1_B_scaffold_2475_3
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


697..1272
DNA (576bp) protein (192aa)
30S ribosomal protein S5 n=1 Tax=Bradyrhizobium elkanii RepID=UPI000300768B
30S ribosomal protein S5 {ECO:0000256|HAMAP-Rule:MF_01307, ECO:0000256|SAAS:SAAS00085406}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
rpsE; 30S ribosomal protein S5
SCN18_13_7_16_R1_B_scaffold_2475_4
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


1358..1552
DNA (195bp) protein (65aa)
50S ribosomal protein L30 n=1 Tax=Afipia sp. 1NLS2 RepID=D6VAC6_9BRAD
50S ribosomal protein L30 {ECO:0000256|HAMAP-Rule:MF_01371, ECO:0000256|SAAS:SAAS00082687}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
rpmD; 50S ribosomal protein L30
SCN18_13_7_16_R1_B_scaffold_2475_5
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


1660..2145
DNA (486bp) protein (162aa)
50S ribosomal protein L15 n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=RL15_RHOPB
rplO; 50S ribosomal protein L15
50S ribosomal protein L15 {ECO:0000255|HAMAP-Rule:MF_01341}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCN18_13_7_16_R1_B_scaffold_2475_6
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


2299..3630
DNA (1332bp) protein (444aa)
Protein translocase subunit SecY n=2 Tax=Oligotropha carboxidovorans RepID=B6JEY5_OLICO
secY; preprotein translocase subunit SecY
Preprotein translocase subunit SecY {ECO:0000313|EMBL:AEI07010.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCN18_13_7_16_R1_B_scaffold_2475_7
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3627..4574
DNA (948bp) protein (316aa)
Adenylate kinase {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331}; Short=AK {ECO:0000256|HAMAP-Rule:MF_00235};; EC=2.7.4.3 {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331};; ATP-AMP transphosphorylase {ECO:0000256|HAMAP-Rule:MF_00235}; ATP:AMP phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00235}; Adenylate monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00235}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
Adenylate kinase n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QPX5_9BRAD
adenylate kinase
SCN18_13_7_16_R1_B_scaffold_2475_8
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


4731..5099
DNA (369bp) protein (123aa)
30S ribosomal protein S13 n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=RS13_RHOPS
rpsM; 30S ribosomal protein S13
30S ribosomal protein S13 {ECO:0000255|HAMAP-Rule:MF_01315}; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
SCN18_13_7_16_R1_B_scaffold_2475_9
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


5210..5599
DNA (390bp) protein (130aa)
30S ribosomal protein S11 n=5 Tax=Bradyrhizobium RepID=RS11_BRASO
30S ribosomal protein S11
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=551936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3809.;"
SCN18_13_7_16_R1_B_scaffold_2475_10
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5698..6747
DNA (1050bp) protein (350aa)
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; TaxID=566679 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. ORS 375.;"
rpoA; DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6)
DNA-directed RNA polymerase subunit alpha n=1 Tax=Bradyrhizobium sp. ORS 375 RepID=H0SJ41_9BRAD
SCN18_13_7_16_R1_B_scaffold_2475_11
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


6869..7285
DNA (417bp) protein (139aa)
50S ribosomal protein L17 n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=RL17_NITWN
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368, ECO:0000256|RuleBase:RU000661}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
rplQ; 50S ribosomal protein L17
SCN18_13_7_16_R1_B_scaffold_2475_12
SCN_Variovorax_21x, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7535..8656)
DNA (1122bp) protein (374aa)
saccharopine dehydrogenase n=1 Tax=Afipia birgiae RepID=UPI0002EB935D
Uncharacterized protein {ECO:0000313|EMBL:EGP06746.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
hypothetical protein
SCN18_13_7_16_R1_B_scaffold_2475_13
SCN_Variovorax_21x, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8724..8882)
DNA (159bp) protein (53aa)
oxidoreductase n=1 Tax=Afipia birgiae RepID=UPI000303CDE2
Uncharacterized protein {ECO:0000313|EMBL:EKS38939.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
hypothetical protein
Displaying 13 items

View Taxonomy