ggKbase home page

SCN18_13_7_16_R1_B_scaffold_814

Search features with annotation key words

Displaying items 1-30 of 37 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_13_7_16_R1_B_scaffold_814_1
SCNPILOT_SOLID2_TRIM150_Sphingobacteriales_40_586, SCNPILOT_SOLID2_TRIM150_Sphingobacteriales_40_586, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(2..760)
DNA (759bp) protein (253aa)
id=2089244 bin=GWE2_Bacteroidetes_42_42 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE2_Bacteroidetes_42_42 organism_group=Bacteroidetes organism_desc=Good +
Tax=GWF2_Bacteroidetes_43_63_curated
SCN18_13_7_16_R1_B_scaffold_814_2
SCNPILOT_SOLID2_TRIM150_Sphingobacteriales_40_586, SCNPILOT_SOLID2_TRIM150_Sphingobacteriales_40_586, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(776..1699)
DNA (924bp) protein (308aa)
SCN18_13_7_16_R1_B_scaffold_814_3
SCNPILOT_SOLID2_TRIM150_Sphingobacteriales_40_586, SCNPILOT_SOLID2_TRIM150_Sphingobacteriales_40_586, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

2459..2806
DNA (348bp) protein (116aa)
S23 ribosomal protein n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IFE2_FLUTR
S23 ribosomal protein
S23 ribosomal protein {ECO:0000313|EMBL:AEA44627.1}; TaxID=755732 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Cryomorphaceae; Fluviicola.;" source="Fluviicola taffensis (strain DSM 16823 / RW262 / RW262).;"
SCN18_13_7_16_R1_B_scaffold_814_4
SCNPILOT_SOLID2_TRIM150_Sphingobacteriales_40_586, SCNPILOT_SOLID2_TRIM150_Sphingobacteriales_40_586, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

3041..5245
DNA (2205bp) protein (735aa)
hypothetical protein n=1 Tax=Flavobacterium rivuli RepID=UPI0003665B3B
Uncharacterized protein {ECO:0000313|EMBL:KGO84722.1}; TaxID=1121895 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium rivuli WB 3.3-2 = DSM 21788.;"
alpha,alpha-trehalose-phosphate synthase (UDP-forming)
SCN18_13_7_16_R1_B_scaffold_814_5
SCNPILOT_SOLID2_TRIM150_Sphingobacteriales_40_586, SCNPILOT_SOLID2_TRIM150_Sphingobacteriales_40_586, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(5364..6764)
DNA (1401bp) protein (467aa)
dihydrolipoamide dehydrogenase (EC:1.8.1.4)
Dihydrolipoyl dehydrogenase {ECO:0000256|RuleBase:RU003692}; EC=1.8.1.4 {ECO:0000256|RuleBase:RU003692};; TaxID=755732 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Cryomorphaceae; Fluviicola.;" source="Fluviicola taffensis (strain DSM 16823 / RW262 / RW262).;"
Dihydrolipoyl dehydrogenase n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IAT6_FLUTR
SCN18_13_7_16_R1_B_scaffold_814_6
SCNPILOT_SOLID2_TRIM150_Sphingobacteriales_40_586, SCNPILOT_SOLID2_TRIM150_Sphingobacteriales_40_586, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(6921..8465)
DNA (1545bp) protein (515aa)
Mg chelatase, subunit ChlI n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IDW3_FLUTR
Mg chelatase subunit ChlI
Mg chelatase, subunit ChlI {ECO:0000313|EMBL:AEA44505.1}; TaxID=755732 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Cryomorphaceae; Fluviicola.;" source="Fluviicola taffensis (strain DSM 16823 / RW262 / RW262).;"
SCN18_13_7_16_R1_B_scaffold_814_7
SCNPILOT_SOLID2_TRIM150_Sphingobacteriales_40_586, SCNPILOT_SOLID2_TRIM150_Sphingobacteriales_40_586, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

8549..10786
DNA (2238bp) protein (746aa)
Dipeptidyl-peptidase IV (EC:3.4.14.5)
peptidase S9 n=1 Tax=Flavobacterium antarcticum RepID=UPI0003B4ED9A
Tax=RIFCSPHIGHO2_02_FULL_Fluviicola_43_260_curated
SCN18_13_7_16_R1_B_scaffold_814_8
SCNPILOT_SOLID2_TRIM150_Sphingobacteriales_40_586, SCNPILOT_SOLID2_TRIM150_Sphingobacteriales_40_586, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

10891..11172
DNA (282bp) protein (94aa)
Uncharacterized protein n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IDA8_FLUTR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEA45523.1}; Flags: Precursor;; TaxID=755732 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Cryomorphaceae; Fluviicola.;" source="Fluviicola taffensis (strain DSM 16823 / RW262 / RW262).;"
SCN18_13_7_16_R1_B_scaffold_814_9
SCNPILOT_SOLID2_TRIM150_Sphingobacteriales_40_586, SCNPILOT_SOLID2_TRIM150_Sphingobacteriales_40_586, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(11264..13702)
DNA (2439bp) protein (813aa)
TonB-dependent receptor {ECO:0000313|EMBL:KIA94582.1}; TaxID=1069985 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter kyungheensis.;"
TonB-dependent receptor id=2253997 bin=GWB2_Bacteroidetes_32_14 species=Runella slithyformis genus=Runella taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWB2_Bacteroidetes_32_14 organism_group=Bacteroidetes organism_desc=a47
TonB-dependent receptor
SCN18_13_7_16_R1_B_scaffold_814_10
SCNPILOT_SOLID2_TRIM150_Sphingobacteriales_40_586, SCNPILOT_SOLID2_TRIM150_Sphingobacteriales_40_586, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(13930..14883)
DNA (954bp) protein (318aa)
flavonol synthase n=1 Tax=Empedobacter brevis RepID=UPI000377B25A
oxidoreductase
Tax=GWF1_Flavobacteria_32_7_curated
SCN18_13_7_16_R1_B_scaffold_814_11
SCNPILOT_SOLID2_TRIM150_Sphingobacteriales_40_586, SCNPILOT_SOLID2_TRIM150_Sphingobacteriales_40_586, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(14981..16006)
DNA (1026bp) protein (342aa)
Oxidoreductase domain protein n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2I991_FLUTR
oxidoreductase domain-containing protein
Tax=RIFCSPHIGHO2_02_FULL_Fluviicola_43_260_curated
SCN18_13_7_16_R1_B_scaffold_814_12
SCNPILOT_SOLID2_TRIM150_Sphingobacteriales_40_586, SCNPILOT_SOLID2_TRIM150_Sphingobacteriales_40_586, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


16208..16519
DNA (312bp) protein (104aa)
50S ribosomal protein L21 n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IJP9_FLUTR
50S ribosomal protein L21
Tax=RIFCSPHIGHO2_02_FULL_Fluviicola_43_260_curated
SCN18_13_7_16_R1_B_scaffold_814_13
SCNPILOT_SOLID2_TRIM150_Sphingobacteriales_40_586, SCNPILOT_SOLID2_TRIM150_Sphingobacteriales_40_586, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


16562..16831
DNA (270bp) protein (90aa)
50S ribosomal protein L27 n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IJQ0_FLUTR
50S ribosomal protein L27
50S ribosomal protein L27 {ECO:0000256|HAMAP-Rule:MF_00539}; TaxID=755732 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Cryomorphaceae; Fluviicola.;" source="Fluviicola taffensis (strain DSM 16823 / RW262 / RW262).;"
SCN18_13_7_16_R1_B_scaffold_814_14
SCNPILOT_SOLID2_TRIM150_Sphingobacteriales_40_586, SCNPILOT_SOLID2_TRIM150_Sphingobacteriales_40_586, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

16947..18221
DNA (1275bp) protein (425aa)
seryl-tRNA synthetase (EC:6.1.1.11)
Seryl-tRNA synthetase n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IJQ1_FLUTR
Tax=RIFCSPHIGHO2_02_FULL_Bacteroidetes_44_7_curated
SCN18_13_7_16_R1_B_scaffold_814_15
SCNPILOT_SOLID2_TRIM150_Sphingobacteriales_40_586, SCNPILOT_SOLID2_TRIM150_Sphingobacteriales_40_586, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

18250..18495
DNA (246bp) protein (82aa)
SCN18_13_7_16_R1_B_scaffold_814_16
SCNPILOT_SOLID2_TRIM150_Sphingobacteriales_40_586, SCNPILOT_SOLID2_TRIM150_Sphingobacteriales_40_586, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

18658..22674
DNA (4017bp) protein (1339aa)
PKD domain containing protein id=4204122 bin=GWF2_Bacteroidetes_38_335 species=Haliscomenobacter hydrossis genus=Haliscomenobacter taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_38_335 organism_group=Bacteroidetes organism_desc=a11
PKD domain-containing protein
Tax=GWF2_Bacteroidetes_38_335_curated
SCN18_13_7_16_R1_B_scaffold_814_17
SCNPILOT_SOLID2_TRIM150_Sphingobacteriales_40_586, SCNPILOT_SOLID2_TRIM150_Sphingobacteriales_40_586, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(22873..23751)
DNA (879bp) protein (293aa)
Uncharacterized protein n=1 Tax=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) RepID=A5FCL9_FLAJ1
Strain DSM 12611 Contig04, whole genome shotgun sequence {ECO:0000313|EMBL:KIO54073.1}; TaxID=37752 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium hibernum.;"
hypothetical protein
SCN18_13_7_16_R1_B_scaffold_814_18
SCNPILOT_SOLID2_TRIM150_Sphingobacteriales_40_586, SCNPILOT_SOLID2_TRIM150_Sphingobacteriales_40_586, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(23882..26320)
DNA (2439bp) protein (813aa)
Ig domain protein group 2 domain protein n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IB30_FLUTR
hypothetical protein
Ig domain protein group 2 domain protein {ECO:0000313|EMBL:AEA42113.1}; Flags: Precursor;; TaxID=755732 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Cryomorphaceae; Fluviicola.;" source="Fluviicola taffensis (strain DSM 16823 / RW262 / RW262).;"
SCN18_13_7_16_R1_B_scaffold_814_19
SCNPILOT_SOLID2_TRIM150_Sphingobacteriales_40_586, SCNPILOT_SOLID2_TRIM150_Sphingobacteriales_40_586, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(26372..27601)
DNA (1230bp) protein (410aa)
PKD domain containing protein n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IG71_FLUTR
PKD domain-containing protein
Tax=RIFCSPHIGHO2_02_FULL_Fluviicola_43_260_curated
SCN18_13_7_16_R1_B_scaffold_814_20
SCNPILOT_SOLID2_TRIM150_Sphingobacteriales_40_586, SCNPILOT_SOLID2_TRIM150_Sphingobacteriales_40_586, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(27699..29249)
DNA (1551bp) protein (517aa)
CHU large protein n=1 Tax=Flavobacterium cauense R2A-7 RepID=V6S1L8_9FLAO
CHU large protein {ECO:0000313|EMBL:ESU20611.1}; TaxID=1341154 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium cauense R2A-7.;"
mucin 2, oligomeric mucus/gel-forming
SCN18_13_7_16_R1_B_scaffold_814_21
SCNPILOT_SOLID2_TRIM150_Sphingobacteriales_40_586, SCNPILOT_SOLID2_TRIM150_Sphingobacteriales_40_586, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

29454..30032
DNA (579bp) protein (193aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00037B74D3
catabolite gene activator protein
Cyclic nucleotide-binding protein {ECO:0000313|EMBL:EJF08281.1}; TaxID=1144253 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Pontibacter.;" source="Pontibacter sp. BAB1700.;"
SCN18_13_7_16_R1_B_scaffold_814_22
SCNPILOT_SOLID2_TRIM150_Sphingobacteriales_40_586, SCNPILOT_SOLID2_TRIM150_Sphingobacteriales_40_586, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(30133..32781)
DNA (2649bp) protein (883aa)
Uncharacterized protein n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IK91_FLUTR
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_31_6_curated
SCN18_13_7_16_R1_B_scaffold_814_23
SCNPILOT_SOLID2_TRIM150_Sphingobacteriales_40_586, SCNPILOT_SOLID2_TRIM150_Sphingobacteriales_40_586, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

33144..36392
DNA (3249bp) protein (1083aa)
Conserved repeat domain protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UVC4_VARPE
Uncharacterized protein {ECO:0000313|EMBL:KKQ66696.1}; TaxID=1618422 species="Bacteria; Microgenomates.;" source="Microgenomates (Daviesbacteria) bacterium GW2011_GWA2_38_24.;"
hypothetical protein
SCN18_13_7_16_R1_B_scaffold_814_24
SCNPILOT_SOLID2_TRIM150_Sphingobacteriales_40_586, SCNPILOT_SOLID2_TRIM150_Sphingobacteriales_40_586, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(36502..39114)
DNA (2613bp) protein (871aa)
Alanine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015689}; EC=6.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015673};; Alanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00036}; TaxID=755732 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Cryomorphaceae; Fluviicola.;" source="Fluviicola taffensis (strain DSM 16823 / RW262 / RW262).;"
alanyl-tRNA synthetase (EC:6.1.1.7)
Alanine--tRNA ligase n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IBZ2_FLUTR
SCN18_13_7_16_R1_B_scaffold_814_25
SCNPILOT_SOLID2_TRIM150_Sphingobacteriales_40_586, SCNPILOT_SOLID2_TRIM150_Sphingobacteriales_40_586, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

39296..40540
DNA (1245bp) protein (415aa)
Uncharacterized protein n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IG51_FLUTR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEA44686.1}; Flags: Precursor;; TaxID=755732 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Cryomorphaceae; Fluviicola.;" source="Fluviicola taffensis (strain DSM 16823 / RW262 / RW262).;"
SCN18_13_7_16_R1_B_scaffold_814_26
SCNPILOT_SOLID2_TRIM150_Sphingobacteriales_40_586, SCNPILOT_SOLID2_TRIM150_Sphingobacteriales_40_586, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

40556..41416
DNA (861bp) protein (287aa)
Periplasmic binding protein n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IG52_FLUTR
periplasmic-binding protein
Tax=RIFCSPHIGHO2_02_FULL_Fluviicola_43_260_curated
SCN18_13_7_16_R1_B_scaffold_814_27
SCNPILOT_SOLID2_TRIM150_Sphingobacteriales_40_586, SCNPILOT_SOLID2_TRIM150_Sphingobacteriales_40_586, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

41459..42505
DNA (1047bp) protein (349aa)
Transport system permease protein n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IG53_FLUTR
transport system permease
Tax=RIFCSPHIGHO2_02_FULL_Fluviicola_43_260_curated
SCN18_13_7_16_R1_B_scaffold_814_28
SCNPILOT_SOLID2_TRIM150_Sphingobacteriales_40_586, SCNPILOT_SOLID2_TRIM150_Sphingobacteriales_40_586, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

42502..43344
DNA (843bp) protein (281aa)
Vitamin B12-transporting ATPase (EC:3.6.3.33)
Vitamin B12-transporting ATPase n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IG54_FLUTR
Tax=RIFCSPHIGHO2_02_FULL_Fluviicola_43_260_curated
SCN18_13_7_16_R1_B_scaffold_814_29
SCNPILOT_SOLID2_TRIM150_Sphingobacteriales_40_586, SCNPILOT_SOLID2_TRIM150_Sphingobacteriales_40_586, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

43347..44393
DNA (1047bp) protein (349aa)
hypothetical protein n=1 Tax=Empedobacter brevis RepID=UPI00035EB872
hemin-degrading family protein
Tax=RIFCSPHIGHO2_02_FULL_Fluviicola_43_260_curated
SCN18_13_7_16_R1_B_scaffold_814_30
SCNPILOT_SOLID2_TRIM150_Sphingobacteriales_40_586, SCNPILOT_SOLID2_TRIM150_Sphingobacteriales_40_586, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

44404..46662
DNA (2259bp) protein (753aa)
TonB-dependent receptor plug n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IG56_FLUTR
TonB-dependent receptor plug
Tax=RIFCSPHIGHO2_02_FULL_Fluviicola_43_260_curated
Displaying items 1-30 of 37 in total

View Taxonomy