ggKbase home page

SCN18_13_7_16_R1_B_scaffold_1008

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_13_7_16_R1_B_scaffold_1008_1
SCNpilot_BF_INOC_Flavobacteriales_40_20, SCNpilot_BF_INOC_Flavobacteriales_40_20, SCNpilot_BF_INOC_Flavobacteriales_40_20, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

3..1169
DNA (1167bp) protein (389aa)
3-hydroxyacyl-ACP dehydratase (EC:4.2.1.-)
3-hydroxyacyl-(Acyl-carrier-protein) dehydratase n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2ICQ0_FLUTR
Tax=RIFCSPHIGHO2_02_FULL_Fluviicola_43_260_curated
SCN18_13_7_16_R1_B_scaffold_1008_2
SCNpilot_BF_INOC_Flavobacteriales_40_20, SCNpilot_BF_INOC_Flavobacteriales_40_20, SCNpilot_BF_INOC_Flavobacteriales_40_20, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

1174..1950
DNA (777bp) protein (259aa)
acyl-ACP-UDP-N-acetylglucosamine O-acyltransferase (EC:2.3.1.129)
Acyl-(Acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2ICP9_FLUTR
Tax=RIFCSPHIGHO2_02_FULL_Fluviicola_43_260_curated
SCN18_13_7_16_R1_B_scaffold_1008_3
SCNpilot_BF_INOC_Flavobacteriales_40_20, SCNpilot_BF_INOC_Flavobacteriales_40_20, SCNpilot_BF_INOC_Flavobacteriales_40_20, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(2019..3194)
DNA (1176bp) protein (392aa)
SAM-dependent methyltransferase (EC:2.1.1.-)
SAM-dependent methyltransferase {ECO:0000313|EMBL:AEA45555.1}; EC=2.1.1.- {ECO:0000313|EMBL:AEA45555.1};; TaxID=755732 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Cryomorphaceae; Fluviicola.;" source="Fluviicola taffensis (strain DSM 16823 / RW262 / RW262).;"
SAM-dependent methyltransferase n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IDZ1_FLUTR
SCN18_13_7_16_R1_B_scaffold_1008_4
SCNpilot_BF_INOC_Flavobacteriales_40_20, SCNpilot_BF_INOC_Flavobacteriales_40_20, SCNpilot_BF_INOC_Flavobacteriales_40_20, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(3245..3583)
DNA (339bp) protein (113aa)
Translation initiation factor 1 (EIF-1/SUI1) n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IA81_FLUTR
translation initiation factor 1 (eIF-1/SUI1)
Tax=RIFCSPHIGHO2_02_FULL_Bacteroidetes_44_7_curated
SCN18_13_7_16_R1_B_scaffold_1008_5
SCNpilot_BF_INOC_Flavobacteriales_40_20, SCNpilot_BF_INOC_Flavobacteriales_40_20, SCNpilot_BF_INOC_Flavobacteriales_40_20, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(3585..4370)
DNA (786bp) protein (262aa)
hypothetical protein
Tax=RIFCSPHIGHO2_02_FULL_Fluviicola_43_260_curated
SCN18_13_7_16_R1_B_scaffold_1008_6
SCNpilot_BF_INOC_Flavobacteriales_40_20, SCNpilot_BF_INOC_Flavobacteriales_40_20, SCNpilot_BF_INOC_Flavobacteriales_40_20, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(4360..4812)
DNA (453bp) protein (151aa)
SCN18_13_7_16_R1_B_scaffold_1008_7
SCNpilot_BF_INOC_Flavobacteriales_40_20, SCNpilot_BF_INOC_Flavobacteriales_40_20, SCNpilot_BF_INOC_Flavobacteriales_40_20, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

4923..6551
DNA (1629bp) protein (543aa)
Carboxyl-terminal protease n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IEP9_FLUTR
carboxyl-terminal protease
Tax=RIFCSPHIGHO2_02_FULL_Bacteroidetes_44_7_curated
SCN18_13_7_16_R1_B_scaffold_1008_8
SCNpilot_BF_INOC_Flavobacteriales_40_20, SCNpilot_BF_INOC_Flavobacteriales_40_20, SCNpilot_BF_INOC_Flavobacteriales_40_20, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

6559..7059
DNA (501bp) protein (167aa)
Uncharacterized protein n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IEQ0_FLUTR
hypothetical protein
Tax=RIFCSPHIGHO2_02_FULL_Fluviicola_43_260_curated
SCN18_13_7_16_R1_B_scaffold_1008_9
SCNpilot_BF_INOC_Flavobacteriales_40_20, SCNpilot_BF_INOC_Flavobacteriales_40_20, SCNpilot_BF_INOC_Flavobacteriales_40_20, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(7081..7488)
DNA (408bp) protein (136aa)
SCN18_13_7_16_R1_B_scaffold_1008_10
SCNpilot_BF_INOC_Flavobacteriales_40_20, SCNpilot_BF_INOC_Flavobacteriales_40_20, SCNpilot_BF_INOC_Flavobacteriales_40_20, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(7531..8391)
DNA (861bp) protein (287aa)
Metallo-beta-lactamase superfamily protein n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IAW5_FLUTR
Beta-lactamase {ECO:0000313|EMBL:KJS04177.1}; TaxID=1629721 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales.;" source="Flavobacteriales bacterium BRH_c54.;"
metallo-beta-lactamase superfamily protein
SCN18_13_7_16_R1_B_scaffold_1008_11
SCNpilot_BF_INOC_Flavobacteriales_40_20, SCNpilot_BF_INOC_Flavobacteriales_40_20, SCNpilot_BF_INOC_Flavobacteriales_40_20, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(8398..9807)
DNA (1410bp) protein (470aa)
Uncharacterized protein n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IDS7_FLUTR
hypothetical protein
Tax=RIFCSPHIGHO2_02_FULL_Fluviicola_43_260_curated
SCN18_13_7_16_R1_B_scaffold_1008_12
SCNpilot_BF_INOC_Flavobacteriales_40_20, SCNpilot_BF_INOC_Flavobacteriales_40_20, SCNpilot_BF_INOC_Flavobacteriales_40_20, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(9920..10360)
DNA (441bp) protein (147aa)
Uncharacterized protein n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IFF5_FLUTR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEA44640.1}; Flags: Precursor;; TaxID=755732 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Cryomorphaceae; Fluviicola.;" source="Fluviicola taffensis (strain DSM 16823 / RW262 / RW262).;"
SCN18_13_7_16_R1_B_scaffold_1008_13
SCNpilot_BF_INOC_Flavobacteriales_40_20, SCNpilot_BF_INOC_Flavobacteriales_40_20, SCNpilot_BF_INOC_Flavobacteriales_40_20, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(10422..10988)
DNA (567bp) protein (189aa)
trpG; anthranilate synthase component II (glutamine amidotransferase) (EC:4.1.3.27)
Anthranilate synthase component II n=1 Tax=Imtechella halotolerans K1 RepID=I0WGZ7_9FLAO
Tax=RIFCSPHIGHO2_02_FULL_Fluviicola_43_260_curated
SCN18_13_7_16_R1_B_scaffold_1008_14
SCNpilot_BF_INOC_Flavobacteriales_40_20, SCNpilot_BF_INOC_Flavobacteriales_40_20, SCNpilot_BF_INOC_Flavobacteriales_40_20, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

11115..11492
DNA (378bp) protein (126aa)
Endoribonuclease L-PSP n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IFE9_FLUTR
endoribonuclease L-PSP
Endoribonuclease L-PSP {ECO:0000313|EMBL:AEA44634.1}; TaxID=755732 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Cryomorphaceae; Fluviicola.;" source="Fluviicola taffensis (strain DSM 16823 / RW262 / RW262).;"
SCN18_13_7_16_R1_B_scaffold_1008_15
SCNpilot_BF_INOC_Flavobacteriales_40_20, SCNpilot_BF_INOC_Flavobacteriales_40_20, SCNpilot_BF_INOC_Flavobacteriales_40_20, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

11492..11992
DNA (501bp) protein (167aa)
SCN18_13_7_16_R1_B_scaffold_1008_16
SCNpilot_BF_INOC_Flavobacteriales_40_20, SCNpilot_BF_INOC_Flavobacteriales_40_20, SCNpilot_BF_INOC_Flavobacteriales_40_20, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

11993..13948
DNA (1956bp) protein (652aa)
Glycosyl transferase family 2 n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IFE8_FLUTR
family 2 glycosyl transferase
Glycosyl transferase family 2 {ECO:0000313|EMBL:AEA44633.1}; TaxID=755732 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Cryomorphaceae; Fluviicola.;" source="Fluviicola taffensis (strain DSM 16823 / RW262 / RW262).;"
SCN18_13_7_16_R1_B_scaffold_1008_17
SCNpilot_BF_INOC_Flavobacteriales_40_20, SCNpilot_BF_INOC_Flavobacteriales_40_20, SCNpilot_BF_INOC_Flavobacteriales_40_20, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

14025..15377
DNA (1353bp) protein (451aa)
dihydrolipoyllysine-residue acetyltransferase (EC:2.3.1.12)
Dihydrolipoyllysine-residue acetyltransferase {ECO:0000313|EMBL:AEA44632.1}; EC=2.3.1.12 {ECO:0000313|EMBL:AEA44632.1};; TaxID=755732 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Cryomorphaceae; Fluviicola.;" source="Fluviicola taffensis (strain DSM 16823 / RW262 / RW262).;"
Dihydrolipoyllysine-residue acetyltransferase n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IFE7_FLUTR
SCN18_13_7_16_R1_B_scaffold_1008_18
SCNpilot_BF_INOC_Flavobacteriales_40_20, SCNpilot_BF_INOC_Flavobacteriales_40_20, SCNpilot_BF_INOC_Flavobacteriales_40_20, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

15441..17495
DNA (2055bp) protein (685aa)
OmpA/MotB domain protein n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IFE6_FLUTR
OmpA/MotB domain-containing protein
Tax=RIFCSPHIGHO2_02_FULL_Fluviicola_43_260_curated
SCN18_13_7_16_R1_B_scaffold_1008_19
SCNpilot_BF_INOC_Flavobacteriales_40_20, SCNpilot_BF_INOC_Flavobacteriales_40_20, SCNpilot_BF_INOC_Flavobacteriales_40_20, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists


17640..20270
DNA (2631bp) protein (877aa)
valyl-tRNA synthetase (EC:6.1.1.9)
Valine--tRNA ligase n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IC97_FLUTR
Tax=RIFCSPHIGHO2_02_FULL_Fluviicola_43_260_curated
SCN18_13_7_16_R1_B_scaffold_1008_20
SCNpilot_BF_INOC_Flavobacteriales_40_20, SCNpilot_BF_INOC_Flavobacteriales_40_20, SCNpilot_BF_INOC_Flavobacteriales_40_20, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

20303..21163
DNA (861bp) protein (287aa)
SCN18_13_7_16_R1_B_scaffold_1008_21
SCNpilot_BF_INOC_Flavobacteriales_40_20, SCNpilot_BF_INOC_Flavobacteriales_40_20, SCNpilot_BF_INOC_Flavobacteriales_40_20, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(21749..24169)
DNA (2421bp) protein (807aa)
TonB-dependent receptor n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IBR0_FLUTR
TonB-dependent receptor
Tax=RIFCSPHIGHO2_02_FULL_Fluviicola_43_260_curated
SCN18_13_7_16_R1_B_scaffold_1008_22
SCNpilot_BF_INOC_Flavobacteriales_40_20, SCNpilot_BF_INOC_Flavobacteriales_40_20, SCNpilot_BF_INOC_Flavobacteriales_40_20, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(24171..24617)
DNA (447bp) protein (149aa)
Transcriptional regulator, MarR family n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IBQ9_FLUTR
MarR family transcriptional regulator
Transcriptional regulator, MarR family {ECO:0000313|EMBL:AEA45385.1}; TaxID=755732 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Cryomorphaceae; Fluviicola.;" source="Fluviicola taffensis (strain DSM 16823 / RW262 / RW262).;"
SCN18_13_7_16_R1_B_scaffold_1008_23
SCNpilot_BF_INOC_Flavobacteriales_40_20, SCNpilot_BF_INOC_Flavobacteriales_40_20, SCNpilot_BF_INOC_Flavobacteriales_40_20, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

24751..25008
DNA (258bp) protein (86aa)
Uncharacterized protein id=1852344 bin=GWB2_Ignavibacteria_35_12 species=Azospira oryzae genus=Azospira taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWB2_Ignavibacteria_35_12 organism_group=Ignavibacteria organism_desc=Good
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated
SCN18_13_7_16_R1_B_scaffold_1008_24
SCNpilot_BF_INOC_Flavobacteriales_40_20, SCNpilot_BF_INOC_Flavobacteriales_40_20, SCNpilot_BF_INOC_Flavobacteriales_40_20, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(25044..26048)
DNA (1005bp) protein (335aa)
Chorismate binding domain-containing protein n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2ICR0_FLUTR
Chorismate-binding domain-containing protein
Tax=RIFCSPHIGHO2_02_FULL_Bacteroidetes_44_7_curated
SCN18_13_7_16_R1_B_scaffold_1008_25
SCNpilot_BF_INOC_Flavobacteriales_40_20, SCNpilot_BF_INOC_Flavobacteriales_40_20, SCNpilot_BF_INOC_Flavobacteriales_40_20, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(26009..26428)
DNA (420bp) protein (140aa)
Phenylacetic acid degradation-related protein n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2ICR1_FLUTR
phenylacetic acid degradation-like protein
Tax=RIFCSPHIGHO2_02_FULL_Fluviicola_43_260_curated
SCN18_13_7_16_R1_B_scaffold_1008_26
SCNpilot_BF_INOC_Flavobacteriales_40_20, SCNpilot_BF_INOC_Flavobacteriales_40_20, SCNpilot_BF_INOC_Flavobacteriales_40_20, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(26527..27381)
DNA (855bp) protein (285aa)
Male sterility domain protein n=1 Tax=Pedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 / LMG 10337 / NBRC 100064 / NCIMB 13643) RepID=F0S7X4_PEDSD
NAD(P)H:quinone oxidoreductase {ECO:0000313|EMBL:CDS95862.1}; TaxID=403776 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. PM2-P1-29.;"
Male sterility domain-containing protein
SCN18_13_7_16_R1_B_scaffold_1008_27
SCNpilot_BF_INOC_Flavobacteriales_40_20, SCNpilot_BF_INOC_Flavobacteriales_40_20, SCNpilot_BF_INOC_Flavobacteriales_40_20, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(27437..27847)
DNA (411bp) protein (137aa)
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI00037688D4
Transcriptional regulator, Rrf2 family {ECO:0000313|EMBL:EFK36950.1}; TaxID=525257 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium gleum ATCC 35910.;"
ywnA; Rrf2 family transcriptional regulator
SCN18_13_7_16_R1_B_scaffold_1008_28
SCNpilot_BF_INOC_Flavobacteriales_40_20, SCNpilot_BF_INOC_Flavobacteriales_40_20, SCNpilot_BF_INOC_Flavobacteriales_40_20, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(28066..29289)
DNA (1224bp) protein (408aa)
Uncharacterized protein n=1 Tax=Flavobacterium sp. F52 RepID=J0RRA6_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:EJG01582.1}; TaxID=1202532 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. F52.;"
hypothetical protein
Displaying 28 items

View Taxonomy