ggKbase home page

SCN18_13_7_16_R1_B_scaffold_361

Search features with annotation key words

Displaying items 1-30 of 72 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_13_7_16_R1_B_scaffold_361_1
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(2..910)
DNA (909bp) protein (303aa)
DNA gyrase subunit A {ECO:0000256|HAMAP-Rule:MF_01897}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01897};; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
DNA gyrase subunit A n=1 Tax=Niabella soli DSM 19437 RepID=H1NPR5_9SPHI
DNA gyrase subunit A
SCN18_13_7_16_R1_B_scaffold_361_2
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

1089..2381
DNA (1293bp) protein (431aa)
Saccharopine dehydrogenase (NAD(+), L-glutamate-forming) n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PUW7_CHIPD
saccharopine dehydrogenase
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
SCN18_13_7_16_R1_B_scaffold_361_3
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(2468..3163)
DNA (696bp) protein (232aa)
NAD-dependent protein deacylase {ECO:0000256|HAMAP-Rule:MF_01121}; EC=3.5.1.- {ECO:0000256|HAMAP-Rule:MF_01121};; Regulatory protein SIR2 homolog {ECO:0000256|HAMAP-Rule:MF_01121}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
NAD-dependent protein deacylase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TFH8_NIAKG
NAD-dependent deacetylase
SCN18_13_7_16_R1_B_scaffold_361_4
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(3299..3775)
DNA (477bp) protein (159aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=T1CKP5_9ZZZZ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHW61787.1}; TaxID=1168034 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prolixibacteraceae; Draconibacterium.;" source="Draconibacterium orientale.;"
SCN18_13_7_16_R1_B_scaffold_361_5
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

3890..4684
DNA (795bp) protein (265aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000368D529
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEW02035.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCN18_13_7_16_R1_B_scaffold_361_6
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(4750..5709)
DNA (960bp) protein (320aa)
D-3-phosphoglycerate dehydrogenase {ECO:0000313|EMBL:KFC94818.1}; EC=1.1.1.- {ECO:0000313|EMBL:KFC94818.1};; EC=1.1.1.95 {ECO:0000313|EMBL:KFC94818.1};; TaxID=1005999 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Leminorella.;" source="Leminorella grimontii ATCC 33999 = DSM 5078.;"
Uncharacterized protein n=1 Tax=Bacteroides ovatus CL03T12C18 RepID=I9SQ98_BACOV
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein
SCN18_13_7_16_R1_B_scaffold_361_7
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

5758..6879
DNA (1122bp) protein (374aa)
Beta-lactamase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TH32_NIAKG
beta-lactamase
Beta-lactamase {ECO:0000313|EMBL:AEW00643.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCN18_13_7_16_R1_B_scaffold_361_8
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(6984..7598)
DNA (615bp) protein (205aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI0003747C4C
LuxR family transcriptional regulator
Tax=BJP_08E140C01_Flavobacteriales_35_8
SCN18_13_7_16_R1_B_scaffold_361_9
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(7591..8013)
DNA (423bp) protein (141aa)
Histidine kinase n=1 Tax=Niabella soli DSM 19437 RepID=H1NM68_9SPHI
hypothetical protein
Tax=BJP_08E140C01_Flavobacteriales_35_8
SCN18_13_7_16_R1_B_scaffold_361_10
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(8036..9478)
DNA (1443bp) protein (481aa)
ATP-binding region ATPase domain protein n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6XX22_PEDHD
ATPase
Tax=BJP_08E140C01_Flavobacteriales_35_8
SCN18_13_7_16_R1_B_scaffold_361_11
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

9642..10889
DNA (1248bp) protein (416aa)
hypothetical protein n=1 Tax=Spirosoma spitsbergense RepID=UPI00036C7187
OmpA/MotB domain protein
OmpA/MotB domain protein {ECO:0000313|EMBL:ADV42295.1}; Flags: Precursor;; TaxID=693979 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides helcogenes (strain ATCC 35417 / DSM 20613 / JCM 6297 / P; 36-108).;"
SCN18_13_7_16_R1_B_scaffold_361_12
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

10926..11723
DNA (798bp) protein (266aa)
SCN18_13_7_16_R1_B_scaffold_361_13
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

11727..12677
DNA (951bp) protein (317aa)
SCN18_13_7_16_R1_B_scaffold_361_14
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

12807..15182
DNA (2376bp) protein (792aa)
SCN18_13_7_16_R1_B_scaffold_361_15
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(15755..16492)
DNA (738bp) protein (246aa)
LmbE family protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TH31_NIAKG
LmbE family protein
LmbE family protein {ECO:0000313|EMBL:AEW00642.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCN18_13_7_16_R1_B_scaffold_361_16
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

16540..17439
DNA (900bp) protein (300aa)
Methylisocitrate lyase {ECO:0000256|RuleBase:RU361121}; EC=4.1.3.30 {ECO:0000256|RuleBase:RU361121};; TaxID=558152 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium piperi.;"
prpB; Methylisocitrate lyase (EC:4.1.3.30)
2-methylisocitrate lyase n=1 Tax=Elizabethkingia meningoseptica RepID=UPI00036FA0D5
SCN18_13_7_16_R1_B_scaffold_361_17
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

17448..18605
DNA (1158bp) protein (386aa)
Citrate synthase n=1 Tax=Sphingobacterium sp. (strain 21) RepID=F4CAB2_SPHS2
Citrate synthase {ECO:0000256|PIRNR:PIRNR001369}; TaxID=1358423 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter antarcticus 4BY.;"
2-methylcitrate synthase/citrate synthase II
SCN18_13_7_16_R1_B_scaffold_361_18
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

18945..19475
DNA (531bp) protein (177aa)
Uncharacterized protein n=1 Tax=Sphingobacterium sp. (strain 21) RepID=F4C297_SPHS2
Uncharacterized protein {ECO:0000313|EMBL:GAL77260.1}; TaxID=221126 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Algibacter.;" source="Algibacter lectus.;"
hypothetical protein
SCN18_13_7_16_R1_B_scaffold_361_19
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(19563..21374)
DNA (1812bp) protein (604aa)
Xenobiotic-transporting ATPase (EC:3.6.3.44)
Xenobiotic-transporting ATPase {ECO:0000313|EMBL:ADY32938.1}; EC=3.6.3.44 {ECO:0000313|EMBL:ADY32938.1};; TaxID=709991 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Odoribacter.;" source="Odoribacter splanchnicus (strain ATCC 29572 / DSM 20712 / JCM 15291 /; NCTC 10825 / 1651/6) (Bacteroides splanchnicus).;"
Xenobiotic-transporting ATPase n=2 Tax=Odoribacter RepID=F9Z7L3_ODOSD
SCN18_13_7_16_R1_B_scaffold_361_20
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(21371..23116)
DNA (1746bp) protein (582aa)
ABC transporter related protein n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1Y673_9SPHI
ABC transporter related protein {ECO:0000313|EMBL:EHQ31032.1}; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
putative ABC transport system, ATP-binding protein
SCN18_13_7_16_R1_B_scaffold_361_21
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(23163..24110)
DNA (948bp) protein (316aa)
Oxidoreductase, aldo/keto reductase family protein n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=D7W2T1_9FLAO
Oxidoreductase, aldo/keto reductase family protein {ECO:0000313|EMBL:EFK34642.1}; TaxID=525257 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium gleum ATCC 35910.;"
aldo/keto reductase family oxidoreductase
SCN18_13_7_16_R1_B_scaffold_361_22
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

24195..24995
DNA (801bp) protein (267aa)
Uncharacterized protein n=1 Tax=Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 / NCIMB 11436 / LSU 4) RepID=F8EQ57_RUNSL
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEI51067.1}; TaxID=761193 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Runella.;" source="Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 /; NCIMB 11436 / LSU 4).;"
SCN18_13_7_16_R1_B_scaffold_361_23
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(25110..26207)
DNA (1098bp) protein (366aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000382647B
Peptidase S1 and S6 chymotrypsin/Hap {ECO:0000313|EMBL:KIC93362.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
peptidase S1 and S6 chymotrypsin/Hap
SCN18_13_7_16_R1_B_scaffold_361_24
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(26200..26775)
DNA (576bp) protein (192aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TI67_NIAKG
RNA polymerase subunit sigma-70 {ECO:0000313|EMBL:KIC93361.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
ECF subfamily RNA polymerase sigma-24 subunit
SCN18_13_7_16_R1_B_scaffold_361_25
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

26919..27113
DNA (195bp) protein (65aa)
SCN18_13_7_16_R1_B_scaffold_361_26
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

27413..28330
DNA (918bp) protein (306aa)
Prephenate dehydratase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TJM2_NIAKG
Chorismate mutase {ECO:0000313|EMBL:KIC94222.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
Prephenate dehydratase
SCN18_13_7_16_R1_B_scaffold_361_27
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

28372..29559
DNA (1188bp) protein (396aa)
LL-diaminopimelate aminotransferase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TJM1_NIAKG
Uncharacterized protein {ECO:0000313|EMBL:KIC91395.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
LL-diaminopimelate aminotransferase
SCN18_13_7_16_R1_B_scaffold_361_28
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

29563..30411
DNA (849bp) protein (283aa)
Prephenate dehydrogenase {ECO:0000313|EMBL:AEW00767.1}; EC=1.3.1.12 {ECO:0000313|EMBL:AEW00767.1};; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Prephenate dehydrogenase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TJM0_NIAKG
prephenate dehydrogenase
SCN18_13_7_16_R1_B_scaffold_361_29
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

30515..32200
DNA (1686bp) protein (562aa)
DEAD/DEAH box helicase domain protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TJL9_NIAKG
DEAD/DEAH box helicase
DEAD/DEAH box helicase domain protein {ECO:0000313|EMBL:AEW00766.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCN18_13_7_16_R1_B_scaffold_361_30
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

32369..33457
DNA (1089bp) protein (363aa)
3-deoxy-D-arabinoheptulosonate-7-phosphate synthase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TJL8_NIAKG
3-deoxy-D-arabino-heptulosonate-7-phosphate synthase {ECO:0000313|EMBL:GAO43274.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
3-deoxy-D-arabinoheptulosonate-7-phosphate synthase
Displaying items 1-30 of 72 in total

View Taxonomy