ggKbase home page

SCN18_13_7_16_R1_B_scaffold_2261

Search features with annotation key words

Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_13_7_16_R1_B_scaffold_2261_1
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..669
DNA (669bp) protein (223aa)
D-alanyl-D-alanine carboxypeptidase {ECO:0000313|EMBL:CDO61099.1}; EC=3.4.16.4 {ECO:0000313|EMBL:CDO61099.1};; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
Serine-type D-Ala-D-Ala carboxypeptidase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HXT3_PARL1
serine-type D-Ala-D-Ala carboxypeptidase
SCN18_13_7_16_R1_B_scaffold_2261_2
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

666..1298
DNA (633bp) protein (211aa)
Thymidylate kinase n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7Z7P4_AZOL4
thymidylate kinase
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_70_10_curated
SCN18_13_7_16_R1_B_scaffold_2261_3
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1298..2350
DNA (1053bp) protein (351aa)
DNA polymerase III subunit delta {ECO:0000313|EMBL:BAQ68446.1}; EC=2.7.7.7 {ECO:0000313|EMBL:BAQ68446.1};; TaxID=35806 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sulfidophilum (Rhodobacter sulfidophilus).;"
DNA polymerase III subunit delta n=1 Tax=Maritimibacter alkaliphilus HTCC2654 RepID=A3VAZ1_9RHOB
DNA replication ATPase
SCN18_13_7_16_R1_B_scaffold_2261_4
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2402..3184
DNA (783bp) protein (261aa)
yabD; metal-dependent DNase(yabD) (EC:3.1.21.-)
TatD family hydrolase n=1 Tax=Oceanibaculum indicum P24 RepID=K2K067_9PROT
TatD family hydrolase {ECO:0000313|EMBL:EKE70925.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
SCN18_13_7_16_R1_B_scaffold_2261_5
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3195..4019
DNA (825bp) protein (275aa)
Beta-lactamase-like protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HXT9_PARL1
metal-dependent hydrolases of the beta-lactamase superfamily I
Beta-lactamase-like protein {ECO:0000313|EMBL:GAK46751.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
SCN18_13_7_16_R1_B_scaffold_2261_6
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4047..4466
DNA (420bp) protein (140aa)
Uncharacterized protein n=1 Tax=Desulfitobacterium dichloroeliminans (strain LMG P-21439 / DCA1) RepID=L0F8C2_DESDL
hypothetical protein
Uncharacterized 1 domain protein {ECO:0000313|EMBL:CDG86060.1}; TaxID=1349767 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628.;"
SCN18_13_7_16_R1_B_scaffold_2261_7
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4486..4680)
DNA (195bp) protein (65aa)
SCN18_13_7_16_R1_B_scaffold_2261_8
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4938..5786
DNA (849bp) protein (283aa)
Nucleoside triphosphate pyrophosphohydrolase MazG (EC:3.6.1.8)
Nucleoside triphosphate pyrophosphohydrolase n=1 Tax=Citreicella sp. SE45 RepID=D0D2G9_9RHOB
Nucleoside triphosphate pyrophosphohydrolase {ECO:0000313|EMBL:EEX14940.1}; TaxID=501479 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Citreicella.;" source="Citreicella sp. SE45.;"
SCN18_13_7_16_R1_B_scaffold_2261_9
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5833..7137)
DNA (1305bp) protein (435aa)
GTPase HflX n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IQ49_RHOCS
hflX; GTP-binding protein hflX
GTPase HflX {ECO:0000256|HAMAP-Rule:MF_00900}; GTP-binding protein HflX {ECO:0000256|HAMAP-Rule:MF_00900}; TaxID=414684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum centenum (strain ATCC 51521 / SW).;"
SCN18_13_7_16_R1_B_scaffold_2261_10
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7158..7406)
DNA (249bp) protein (83aa)
hypothetical protein n=1 Tax=Kordiimonas gwangyangensis RepID=UPI00036B5510
RNA-binding protein Hfq {ECO:0000256|HAMAP-Rule:MF_00436, ECO:0000256|SAAS:SAAS00067493}; TaxID=1605283 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium U9-1i.;"
hfq; RNA-binding protein Hfq
SCN18_13_7_16_R1_B_scaffold_2261_11
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7496..8371)
DNA (876bp) protein (292aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000372562B
class IV aminotransferase
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCN18_13_7_16_R1_B_scaffold_2261_12
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8412..9599)
DNA (1188bp) protein (396aa)
Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HXV1_PARL1
Nitrogen regulation protein NtrX {ECO:0000313|EMBL:CDO61073.1}; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
two component sigma-54 specific Fis family transcriptional regulator
Displaying 12 items

View Taxonomy