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SCN18_13_7_16_R1_B_scaffold_574

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Displaying items 1-30 of 43 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_13_7_16_R1_B_scaffold_574_1
CN-SCN_Rubrivivax_131x, CN-SCN_Rubrivivax_131x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

118..609
DNA (492bp) protein (164aa)
Protein involved in methylation n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UYT5_VARPE
Methylation {ECO:0000313|EMBL:KGH15877.1}; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (Pseudomonas testosteroni).;"
Tfp pilus assembly protein, major pilin PilA
SCN18_13_7_16_R1_B_scaffold_574_2
Acidovorax sp. KKS102_CN-SCN_Acidovorax_28x, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

738..2393
DNA (1656bp) protein (552aa)
O-antigen polymerase family protein n=1 Tax=Variovorax paradoxus B4 RepID=T1XJE1_VARPD
O-antigen polymerase family protein
O-antigen polymerase family protein {ECO:0000313|EMBL:AGU52444.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCN18_13_7_16_R1_B_scaffold_574_3
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2381..2611
DNA (231bp) protein (77aa)
Fimbrial assembly protein, FimB n=1 Tax=Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) RepID=F0QB01_ACIAP
Pilus assembly protein {ECO:0000313|EMBL:KJA12287.1}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
fimbrial assembly protein FimB
SCN18_13_7_16_R1_B_scaffold_574_4
SCNPILOT_SOLID2_TRIM150_Burkholderiales_66_35, SCNPILOT_SOLID2_TRIM150_Burkholderiales_66_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2888..3184)
DNA (297bp) protein (99aa)
Plasmid maintenance system antidote protein, XRE family n=1 Tax=Delftia sp. (strain Cs1-4) RepID=F6ASE2_DELSC
XRE family transcriptional regulator
XRE family transcriptional regulator {ECO:0000313|EMBL:KEH07598.1}; TaxID=180282 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia tsuruhatensis.;"
SCN18_13_7_16_R1_B_scaffold_574_5
SCNPILOT_SOLID2_TRIM150_Burkholderiales_66_35, SCNPILOT_SOLID2_TRIM150_Burkholderiales_66_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3199..3477)
DNA (279bp) protein (93aa)
Plasmid maintenance system killer n=1 Tax=Delftia sp. (strain Cs1-4) RepID=F6ASE3_DELSC
plasmid maintenance system killer protein
Plasmid maintenance system killer {ECO:0000313|EMBL:AEF90111.1}; TaxID=742013 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia sp. (strain Cs1-4).;"
SCN18_13_7_16_R1_B_scaffold_574_6
CN-SCN_Lautropia_15x, CN-SCN_Lautropia_15x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3576..3851
DNA (276bp) protein (92aa)
Prevent-host-death protein n=1 Tax=Ralstonia pickettii DTP0602 RepID=U3QKM8_RALPI
prevent-host-death protein
Prevent-host-death protein {ECO:0000313|EMBL:AGW91585.1}; TaxID=1366050 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia pickettii DTP0602.;"
SCN18_13_7_16_R1_B_scaffold_574_7
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3851..4261
DNA (411bp) protein (137aa)
DNA-binding protein n=1 Tax=Ralstonia pickettii DTP0602 RepID=U3QQL4_RALPI
DNA-binding protein
DNA-binding protein {ECO:0000313|EMBL:AGW91586.1}; TaxID=1366050 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia pickettii DTP0602.;"
SCN18_13_7_16_R1_B_scaffold_574_8
SCN_Comamonadaceae_20x, SCN_Comamonadaceae_20x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4324..4896)
DNA (573bp) protein (191aa)
Uncharacterized protein n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CKI7_THIA3
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAZ87455.1}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
SCN18_13_7_16_R1_B_scaffold_574_9
Delftia acidovorans_SCNPILOT_CONT_500_P_Delftia_66_8.1, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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4941..6197
DNA (1257bp) protein (419aa)
Formyl-CoA transferase n=1 Tax=Delftia acidovorans CCUG 274B RepID=S2XZ76_DELAC
CoA transferase {ECO:0000313|EMBL:KGH12071.1}; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (Pseudomonas testosteroni).;"
L-carnitine dehydratase/bile acid-inducible protein F
SCN18_13_7_16_R1_B_scaffold_574_10
SCNPILOT_SOLID2_TRIM150_Burkholderiales_66_35, SCNPILOT_SOLID2_TRIM150_Burkholderiales_66_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6262..8133)
DNA (1872bp) protein (624aa)
Probable potassium transport system protein kup n=1 Tax=Polaromonas sp. CF318 RepID=J3CXG6_9BURK
Probable potassium transport system protein kup {ECO:0000256|HAMAP-Rule:MF_01522}; Flags: Precursor;; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CF318.;"
K+ potassium transporter
SCN18_13_7_16_R1_B_scaffold_574_11
SCNPILOT_SOLID2_TRIM150_Burkholderiales_66_35, SCNPILOT_SOLID2_TRIM150_Burkholderiales_66_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8340..10211)
DNA (1872bp) protein (624aa)
Probable potassium transport system protein kup n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T8K9_ACIDE
Probable potassium transport system protein kup {ECO:0000256|HAMAP-Rule:MF_01522}; Flags: Precursor;; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
potassium transporter
SCN18_13_7_16_R1_B_scaffold_574_12
Hydrogenophaga sp. PBC_SCNpilot_P_inoc_Hydrogenophaga_70_12, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10282..11568)
DNA (1287bp) protein (429aa)
glutamate--cysteine ligase n=1 Tax=Limnohabitans sp. Rim28 RepID=UPI0002D44552
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEG91305.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
SCN18_13_7_16_R1_B_scaffold_574_13
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11651..12967)
DNA (1317bp) protein (439aa)
Gamma-glutamyl phosphate reductase n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=PROA_RHOFD
proA; gamma-glutamyl phosphate reductase
Tax=RIFCSPHIGHO2_12_FULL_Curvibacter_63_18_curated
SCN18_13_7_16_R1_B_scaffold_574_14
Acidovorax sp. KKS102_CN-SCN_Acidovorax_28x, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13005..14060)
DNA (1056bp) protein (352aa)
DNA polymerase III subunit delta n=1 Tax=Variovorax paradoxus RepID=UPI00036F9B1E
Variovorax paradoxus strain MEDvA23 contig_54, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ27458.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
holA; DNA polymerase III subunit delta
SCN18_13_7_16_R1_B_scaffold_574_15
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14194..14469
DNA (276bp) protein (92aa)
Uncharacterized protein n=1 Tax=Variovorax paradoxus B4 RepID=T1XK02_VARPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGU53197.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCN18_13_7_16_R1_B_scaffold_574_16
SCN_Variovorax_21x, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14507..14818
DNA (312bp) protein (104aa)
Plasmid stabilization system n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5D0F3_VARPS
plasmid stabilization system
Plasmid stabilization system {ECO:0000313|EMBL:ACS22497.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCN18_13_7_16_R1_B_scaffold_574_17
SCNpilot_P_inoc_Acidovorax_64_34, SCNpilot_P_inoc_Acidovorax_64_34, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14842..15345)
DNA (504bp) protein (168aa)
Rare lipoprotein B n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q122Q5_POLSJ
rare lipoprotein B
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_61_11_curated
SCN18_13_7_16_R1_B_scaffold_574_18
SCN_Comamonadaceae_20x, SCN_Comamonadaceae_20x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(15351..18056)
DNA (2706bp) protein (902aa)
Leucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00049}; EC=6.1.1.4 {ECO:0000256|HAMAP-Rule:MF_00049};; Leucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00049}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
leucyl-tRNA synthetase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI0003748B41
leuS; leucyl-tRNA synthetase
SCN18_13_7_16_R1_B_scaffold_574_19
SCNpilot_P_inoc_Acidovorax_64_34, SCNpilot_P_inoc_Acidovorax_64_34, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18167..18646)
DNA (480bp) protein (160aa)
Biopolymer transport protein ExbD/TolR n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VTV5_POLNA
biopolymer transport protein ExbD/TolR
Biopolymer transport protein ExbD/TolR {ECO:0000313|EMBL:ABM39083.1}; TaxID=365044 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas naphthalenivorans (strain CJ2).;"
SCN18_13_7_16_R1_B_scaffold_574_20
Acidovorax sp. KKS102_CN-SCN_Acidovorax_28x, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18656..19297)
DNA (642bp) protein (214aa)
Candidate biopolymer transport protein n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y415_RAMTT
tolQ; biopolymer transport protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_61_40_curated
SCN18_13_7_16_R1_B_scaffold_574_21
SCNPILOT_SOLID2_TRIM150_Burkholderiales_66_35, SCNPILOT_SOLID2_TRIM150_Burkholderiales_66_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19304..20122)
DNA (819bp) protein (273aa)
dihydrodipicolinate reductase (EC:1.3.1.26)
4-hydroxy-tetrahydrodipicolinate reductase {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018068}; Short=HTPA reductase {ECO:0000256|HAMAP-Rule:MF_00102};; EC=1.17.1.8 {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018030};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
4-hydroxy-tetrahydrodipicolinate reductase n=2 Tax=Alicycliphilus denitrificans RepID=E8TW49_ALIDB
SCN18_13_7_16_R1_B_scaffold_574_22
SCN_Variovorax_21x, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20173..20766)
DNA (594bp) protein (198aa)
Putative lipoprotein, SmpA/OmlA family n=1 Tax=Variovorax paradoxus B4 RepID=T1X649_VARPD
putative lipoprotein, SmpA/OmlA family
Outer membrane protein assembly factor BamE {ECO:0000256|HAMAP-Rule:MF_00925}; Flags: Precursor;; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCN18_13_7_16_R1_B_scaffold_574_23
SCNpilot_BF_INOC_Dechloromonas_67_13, SCNpilot_BF_INOC_Dechloromonas_67_13, SCNpilot_BF_INOC_Dechloromonas_67_13, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20804..21268
DNA (465bp) protein (155aa)
Fur family ferric uptake regulator n=1 Tax=Ralstonia sp. PBA RepID=I9BTE3_9RALS
Fur family ferric uptake regulator {ECO:0000313|EMBL:EIZ03173.1}; TaxID=795666 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. PBA.;"
Fur family ferric uptake regulator
SCN18_13_7_16_R1_B_scaffold_574_24
Acidovorax sp. KKS102_CN-SCN_Acidovorax_28x, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21282..22244)
DNA (963bp) protein (321aa)
HPr kinase/phosphorylase {ECO:0000256|HAMAP-Rule:MF_01249, ECO:0000256|SAAS:SAAS00058411}; Short=HPrK/P {ECO:0000256|HAMAP-Rule:MF_01249};; EC=2.7.11.- {ECO:0000256|HAMAP-Rule:MF_01249, ECO:0000256|SAAS:SAAS00058427};; EC=2.7.4.- {ECO:0000256|HAMAP-Rule:MF_01249, ECO:0000256|SAAS:SAAS00058435};; HPr(Ser) kinase/phosphorylase {ECO:0000256|HAMAP-Rule:MF_01249}; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
HPr kinase/phosphorylase n=1 Tax=Acidovorax sp. CF316 RepID=J0U3H4_9BURK
HPr kinase/phosphorylase
SCN18_13_7_16_R1_B_scaffold_574_25
CN-SCN_Acidovorax_22x, CN-SCN_Acidovorax_22x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22285..22752)
DNA (468bp) protein (156aa)
Candidate PTS system, enzyme IIA Ntr n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y410_RAMTT
PTS system, enzyme IIA Ntr
Candidate PTS system, enzyme IIA Ntr {ECO:0000313|EMBL:AEG91288.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
SCN18_13_7_16_R1_B_scaffold_574_26
CN-SCN_Acidovorax_22x, CN-SCN_Acidovorax_22x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22941..23270)
DNA (330bp) protein (110aa)
Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Hylemonella gracilis ATCC 19624 RepID=F3KSB0_9BURK
Sigma 54 modulation protein/ribosomal protein S30EA {ECO:0000313|EMBL:EGI77304.1}; TaxID=887062 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hylemonella.;" source="Hylemonella gracilis ATCC 19624.;"
sigma 54 modulation protein/30S ribosomal protein S30ea
SCN18_13_7_16_R1_B_scaffold_574_27
SCN_Comamonadaceae_20x, SCN_Comamonadaceae_20x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23586..24572
DNA (987bp) protein (329aa)
Magnesium and cobalt transport protein CorA n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21S05_RHOFD
magnesium and cobalt transport protein CorA
Tax=CG_Rhodof_04
SCN18_13_7_16_R1_B_scaffold_574_28
SCN_Variovorax_21x, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24683..25474)
DNA (792bp) protein (264aa)
5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase (EC:3.2.2.9)
5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 2 {ECO:0000256|SAAS:SAAS00035188}; EC=3.2.2.9 {ECO:0000256|SAAS:SAAS00035196};; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase {ECO:0000256|SAAS:SAAS00035261}; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 1 {ECO:0000256|SAAS:SAAS00035231}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
hypothetical protein n=1 Tax=Limnohabitans sp. Rim47 RepID=UPI000316830D
SCN18_13_7_16_R1_B_scaffold_574_29
SCN_Variovorax_21x, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25614..27287)
DNA (1674bp) protein (558aa)
AMP-dependent synthetase and ligase n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CJ57_VARPS
AMP-dependent synthetase and ligase
AMP-dependent synthetase and ligase {ECO:0000313|EMBL:ACS17057.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCN18_13_7_16_R1_B_scaffold_574_30
Hydrogenophaga sp. PBC_SCNpilot_P_inoc_Hydrogenophaga_70_12, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27463..28884)
DNA (1422bp) protein (474aa)
NAD(P) transhydrogenase subunit beta (EC:1.6.1.2)
NAD(P) transhydrogenase subunit beta n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SLT5_METPP
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
Displaying items 1-30 of 43 in total

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