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SCN18_13_7_16_R1_B_scaffold_775

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Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_13_7_16_R1_B_scaffold_775_1
SCN_Comamonadaceae_20x, SCN_Comamonadaceae_20x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1..1329
DNA (1329bp) protein (443aa)
Excinuclease ABC, A subunit n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G5A0_ALIDK
excinuclease ABC subunit A
UvrABC system protein A {ECO:0000256|SAAS:SAAS00088996}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCN18_13_7_16_R1_B_scaffold_775_2
SCNPILOT_CONT_500_P_Xanthomonadales_66_42, SCNPILOT_CONT_500_P_Xanthomonadales_66_42, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1480..1797
DNA (318bp) protein (106aa)
High potential iron-sulfur protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4WQK0_9GAMM
High potential iron-sulfur protein {ECO:0000313|EMBL:KGI77968.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
High potential iron-sulfur protein
SCN18_13_7_16_R1_B_scaffold_775_3
Delftia acidovorans_SCNPILOT_CONT_500_P_Delftia_66_8.1, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1993..2679
DNA (687bp) protein (229aa)
Cytochrome c, class I n=2 Tax=Comamonas testosteroni RepID=D0IZ38_COMT2
Cytochrome C {ECO:0000313|EMBL:KGH14427.1}; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (Pseudomonas testosteroni).;"
cytochrome c, class I
SCN18_13_7_16_R1_B_scaffold_775_4
Delftia acidovorans_SCNPILOT_CONT_500_P_Delftia_66_8.1, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2693..3775
DNA (1083bp) protein (361aa)
Putative cytochrome c n=1 Tax=Burkholderia cepacia GG4 RepID=J7J5W7_BURCE
Cytochrome C {ECO:0000313|EMBL:KEH09367.1}; TaxID=180282 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia tsuruhatensis.;"
cytochrome c
SCN18_13_7_16_R1_B_scaffold_775_5
SCNPILOT_SOLID2_TRIM150_Burkholderiales_66_35, SCNPILOT_SOLID2_TRIM150_Burkholderiales_66_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(4093..4710)
DNA (618bp) protein (206aa)
hypothetical protein n=1 Tax=Streptomyces sp. CNT302 RepID=UPI00037E7D3C
Putative uncharacterized protein {ECO:0000313|EMBL:EFL36319.1}; TaxID=591159 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces viridochromogenes DSM 40736.;"
hypothetical protein
SCN18_13_7_16_R1_B_scaffold_775_6
SCNPILOT_SOLID2_TRIM150_Burkholderiales_66_35, SCNPILOT_SOLID2_TRIM150_Burkholderiales_66_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(4721..6232)
DNA (1512bp) protein (504aa)
Lignostilbene-alpha,beta-dioxygenase-like enzyme n=1 Tax=Acidovorax sp. CF316 RepID=J1ELF3_9BURK
Lignostilbene-alpha,beta-dioxygenase-like enzyme {ECO:0000313|EMBL:EJE53081.1}; Flags: Precursor;; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
alkane oxygenase
SCN18_13_7_16_R1_B_scaffold_775_7
SCNPILOT_SOLID2_TRIM150_Burkholderiales_66_35, SCNPILOT_SOLID2_TRIM150_Burkholderiales_66_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(6249..6689)
DNA (441bp) protein (147aa)
Uncharacterized protein n=2 Tax=Ralstonia solanacearum RepID=M4ULQ2_RALSL
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGH86162.1}; TaxID=1262456 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia solanacearum FQY_4.;"
SCN18_13_7_16_R1_B_scaffold_775_8
SCNPILOT_SOLID2_TRIM150_Burkholderiales_66_35, SCNPILOT_SOLID2_TRIM150_Burkholderiales_66_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(6849..7643)
DNA (795bp) protein (265aa)
Two component transcriptional regulator, LytTR family n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HMK3_RUBGI
LytTR family two component transcriptional regulator
Two component transcriptional regulator, LytTR family {ECO:0000313|EMBL:BAL94240.1}; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 100245 / IL144).;"
SCN18_13_7_16_R1_B_scaffold_775_9
SCNPILOT_SOLID2_TRIM150_Burkholderiales_66_35, SCNPILOT_SOLID2_TRIM150_Burkholderiales_66_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(7640..8695)
DNA (1056bp) protein (352aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 100245 / IL144).;"
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HMK4_RUBGI
integral membrane sensor signal transduction histidine kinase
SCN18_13_7_16_R1_B_scaffold_775_10
Acidovorax sp. KKS102_CN-SCN_Acidovorax_28x, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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8834..10015
DNA (1182bp) protein (394aa)
hemE; uroporphyrinogen decarboxylase HemE (EC:4.1.1.37)
Uroporphyrinogen decarboxylase n=1 Tax=Variovorax sp. CF313 RepID=J2SQL5_9BURK
Tax=GWA2_Curvibacter_64_110_curated
SCN18_13_7_16_R1_B_scaffold_775_11
Hydrogenophaga sp. PBC_SCNpilot_P_inoc_Hydrogenophaga_70_12, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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10525..12642
DNA (2118bp) protein (706aa)
Primosomal protein N' {ECO:0000256|HAMAP-Rule:MF_00983}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00983};; ATP-dependent helicase PriA {ECO:0000256|HAMAP-Rule:MF_00983}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
primosomal protein N'''' n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000365C91D
primosomal protein N'
SCN18_13_7_16_R1_B_scaffold_775_12
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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12728..13108
DNA (381bp) protein (127aa)
SCN18_13_7_16_R1_B_scaffold_775_13
SCNpilot_P_inoc_Acidovorax_64_34, SCNpilot_P_inoc_Acidovorax_64_34, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(13125..14099)
DNA (975bp) protein (325aa)
Putative permease n=1 Tax=Acidovorax sp. CF316 RepID=J1EQ80_9BURK
auxin efflux carrier
Tax=CG_Rhodof_04
SCN18_13_7_16_R1_B_scaffold_775_14
Hydrogenophaga sp. PBC_SCNpilot_P_inoc_Hydrogenophaga_70_12, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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14155..16218
DNA (2064bp) protein (688aa)
UvrD/REP helicase n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MLU8_9BURK
uvrd/rep helicase
Tax=RIFOXYC12_FULL_Burkholderiales_65_23_curated
SCN18_13_7_16_R1_B_scaffold_775_15
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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16223..16714
DNA (492bp) protein (164aa)
hypothetical protein n=1 Tax=Curvibacter lanceolatus RepID=UPI00037BC21D
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEG91479.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
SCN18_13_7_16_R1_B_scaffold_775_16
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(16721..17416)
DNA (696bp) protein (232aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Comamonas sp. KV36 RepID=I1Z149_9BURK
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:AFJ11827.1}; TaxID=1170709 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas sp. KV36.;"
3-ketoacyl-ACP reductase
SCN18_13_7_16_R1_B_scaffold_775_17
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(17413..18306)
DNA (894bp) protein (298aa)
phhA; phenylalanine 4-monooxygenase (EC:1.14.16.1)
Phenylalanine 4-hydroxylase {ECO:0000313|EMBL:ABM36433.1}; EC=1.14.16.1 {ECO:0000313|EMBL:ABM36433.1};; Flags: Precursor;; TaxID=365044 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas naphthalenivorans (strain CJ2).;"
Phenylalanine 4-hydroxylase n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VLA5_POLNA
SCN18_13_7_16_R1_B_scaffold_775_18
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(18303..18623)
DNA (321bp) protein (107aa)
Putative pterin-4-alpha-carbinolamine dehydratase {ECO:0000256|HAMAP-Rule:MF_00434}; Short=PHS {ECO:0000256|HAMAP-Rule:MF_00434};; EC=4.2.1.96 {ECO:0000256|HAMAP-Rule:MF_00434};; 4-alpha-hydroxy-tetrahydropterin dehydratase {ECO:0000256|HAMAP-Rule:MF_00434}; Pterin carbinolamine dehydratase {ECO:0000256|HAMAP-Rule:MF_00434}; TaxID=1458275 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hylemonella.;" source="Hylemonella gracilis str. Niagara R.;"
pterin-4-alpha-carbinolamine dehydratase (EC:4.2.1.96)
Putative pterin-4-alpha-carbinolamine dehydratase n=1 Tax=Hylemonella gracilis ATCC 19624 RepID=F3KQG7_9BURK
SCN18_13_7_16_R1_B_scaffold_775_19
SCNPILOT_EXPT_750_BF_Rhodanobacter_67_8_fragment, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(18718..19203)
DNA (486bp) protein (162aa)
GCN5-related N-acetyltransferase n=1 Tax=mine drainage metagenome RepID=T0ZBI1_9ZZZZ
GCN5 family acetyltransferase {ECO:0000313|EMBL:KHT40568.1}; TaxID=555 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Pectobacterium.;" source="Pectobacterium carotovorum subsp. carotovorum (Erwinia carotovora; subsp. carotovora).;"
N-acetyltransferase GCN5
SCN18_13_7_16_R1_B_scaffold_775_20
SCNPILOT_EXPT_750_BF_Rhodanobacter_67_8_fragment, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19222..19494)
DNA (273bp) protein (91aa)
Protein containing DUF1778 n=1 Tax=mine drainage metagenome RepID=T1CX20_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:KHT40569.1}; TaxID=555 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Pectobacterium.;" source="Pectobacterium carotovorum subsp. carotovorum (Erwinia carotovora; subsp. carotovora).;"
hypothetical protein
SCN18_13_7_16_R1_B_scaffold_775_21
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(19691..21574)
DNA (1884bp) protein (628aa)
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] {ECO:0000256|HAMAP-Rule:MF_00164, ECO:0000256|SAAS:SAAS00039584}; EC=2.6.1.16 {ECO:0000256|HAMAP-Rule:MF_00164};; D-fructose-6-phosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; GFAT {ECO:0000256|HAMAP-Rule:MF_00164}; Glucosamine-6-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00164}; Hexosephosphate aminotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; L-glutamine--D-fructose-6-phosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5XXP1_RAMTT
glmS; Glucosamine-fructose-6-phosphate aminotransferase
SCN18_13_7_16_R1_B_scaffold_775_22
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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21711..22202
DNA (492bp) protein (164aa)
Transcriptional regulator, AsnC family n=2 Tax=Alicycliphilus denitrificans RepID=F4G659_ALIDK
AsnC family transcriptional regulator
Transcription regulator asnc-type-like protein {ECO:0000313|EMBL:GAO20539.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCN18_13_7_16_R1_B_scaffold_775_23
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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22371..22886
DNA (516bp) protein (172aa)
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated
SCN18_13_7_16_R1_B_scaffold_775_24
CN-SCN_Rubrivivax_131x, CN-SCN_Rubrivivax_131x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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23049..23825
DNA (777bp) protein (259aa)
ABC transporter related n=1 Tax=Ralstonia pickettii (strain 12D) RepID=C6BHA6_RALP1
amino acid ABC transporter ATP-binding protein
Amino acid ABC transporter ATP-binding protein {ECO:0000313|EMBL:AJW43693.1}; TaxID=105219 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia mannitolilytica.;"
SCN18_13_7_16_R1_B_scaffold_775_25
CN-SCN_Rubrivivax_131x, CN-SCN_Rubrivivax_131x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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23822..24550
DNA (729bp) protein (243aa)
ABC transporter-like protein {ECO:0000313|EMBL:EIK89039.1}; EC=3.6.1.3 {ECO:0000313|EMBL:EIK89039.1};; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
histidinol dehydrogenase n=1 Tax=Limnohabitans sp. Rim28 RepID=UPI00031DD4FC
branched chain amino acid ABC transporter ATP-binding protein
SCN18_13_7_16_R1_B_scaffold_775_26
CN-SCN_Rubrivivax_131x, CN-SCN_Rubrivivax_131x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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24592..25815
DNA (1224bp) protein (408aa)
Extracellular ligand-binding receptor n=2 Tax=Alicycliphilus denitrificans RepID=E8TVV5_ALIDB
extracellular ligand-binding receptor
Extracellular ligand-binding receptor {ECO:0000313|EMBL:ADV00619.1}; Flags: Precursor;; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCN18_13_7_16_R1_B_scaffold_775_27
CN-SCN_Rubrivivax_131x, CN-SCN_Rubrivivax_131x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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25970..27190
DNA (1221bp) protein (407aa)
ABC transporter permease n=1 Tax=Limnohabitans sp. Rim28 RepID=UPI000311E8CB
extracellular ligand-binding receptor
Extracellular ligand-binding receptor {ECO:0000313|EMBL:ADV00619.1}; Flags: Precursor;; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCN18_13_7_16_R1_B_scaffold_775_28
CN-SCN_Rubrivivax_131x, CN-SCN_Rubrivivax_131x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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27242..28120
DNA (879bp) protein (293aa)
Inner-membrane translocator n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MIJ7_9BURK
putative branched-chain amino acid ABC transporter, permease component
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_66_14_curated
SCN18_13_7_16_R1_B_scaffold_775_29
CN-SCN_Rubrivivax_131x, CN-SCN_Rubrivivax_131x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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28125..29123
DNA (999bp) protein (333aa)
Branched-chain amino acid ABC transporter, permease protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MIJ6_9BURK
Branched-chain amino acid ABC transporter, permease protein {ECO:0000313|EMBL:EIK89036.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
inner-membrane translocator
SCN18_13_7_16_R1_B_scaffold_775_30
unknown

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29400..29486
DNA (87bp) protein (29aa)

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Displaying 30 items

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