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SCN18_13_7_16_R1_B_scaffold_1025

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_13_7_16_R1_B_scaffold_1025_1
Delftia acidovorans_SCNPILOT_CONT_500_P_Delftia_66_8.1, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2..160
DNA (159bp) protein (53aa)
Conjugal transfer protein n=1 Tax=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) RepID=Q1LN36_RALME
trbF; conjugal transfer protein TrbF
Conjugal transfer protein TrbF {ECO:0000313|EMBL:GAO23338.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCN18_13_7_16_R1_B_scaffold_1025_2
CN-SCN_Comamonas_56x, CN-SCN_Comamonas_56x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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157..1137
DNA (981bp) protein (327aa)
P-type conjugative transfer protein TrbG n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TT26_ALIDB
p-type conjugative transfer protein TrbG {ECO:0000313|EMBL:GAO23337.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
p-type conjugative transfer protein trbg
SCN18_13_7_16_R1_B_scaffold_1025_3
scnpilot_dereplicated_Plasmid_unknown_2, scnpilot_dereplicated_Plasmid_unknown_2, scnpilot_dereplicated_Plasmid_unknown_2, scnpilot_dereplicated_Plasmid_unknown_2, scnpilot_dereplicated_Plasmid_unknown_2, Plasmid-like

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1140..2402
DNA (1263bp) protein (421aa)
Conjugation TrbI family protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TT25_ALIDB
Conjugative transfer protein TrbI {ECO:0000313|EMBL:GAO23336.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
conjugation trbi family protein
SCN18_13_7_16_R1_B_scaffold_1025_4
Delftia acidovorans_SCNPILOT_CONT_500_P_Delftia_66_8.1, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2399..2644
DNA (246bp) protein (82aa)
Uncharacterized protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MQG8_9BURK
Conjugal transfer protein {ECO:0000313|EMBL:GAO23335.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
hypothetical protein
SCN18_13_7_16_R1_B_scaffold_1025_5
Pelistega sp. HM-7, Pelistega, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3773..4045
DNA (273bp) protein (91aa)
hypothetical protein n=1 Tax=Acidovorax avenae RepID=UPI00036D9AA7
Uncharacterized protein {ECO:0000313|EMBL:ETD67736.1}; TaxID=1414851 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Pelistega.;" source="Pelistega sp. HM-7.;"
hypothetical protein
SCN18_13_7_16_R1_B_scaffold_1025_6
SCNPILOT_SOLID2_TRIM150_Rhizobiales_63_17, SCNPILOT_SOLID2_TRIM150_Rhizobiales_63_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4042..4230
DNA (189bp) protein (63aa)
YcfA family protein n=1 Tax=Taylorella asinigenitalis (strain MCE3) RepID=G4QCW1_TAYAM
Uncharacterized protein {ECO:0000313|EMBL:KEH08272.1}; TaxID=180282 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia tsuruhatensis.;"
hypothetical protein
SCN18_13_7_16_R1_B_scaffold_1025_7
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(4306..4626)
DNA (321bp) protein (107aa)
Uncharacterized protein n=1 Tax=Herminiimonas arsenicoxydans RepID=A4G9E6_HERAR
DNA-binding; repressor; transcription; transcription regulation
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
SCN18_13_7_16_R1_B_scaffold_1025_8
unknown

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5089..5196
DNA (108bp) protein (36aa)

This feature has no annotations

SCN18_13_7_16_R1_B_scaffold_1025_9
unknown

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5209..5469
DNA (261bp) protein (87aa)

This feature has no annotations

SCN18_13_7_16_R1_B_scaffold_1025_10
unknown

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5466..5729
DNA (264bp) protein (88aa)

This feature has no annotations

SCN18_13_7_16_R1_B_scaffold_1025_11
unknown

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5726..6001
DNA (276bp) protein (92aa)

This feature has no annotations

SCN18_13_7_16_R1_B_scaffold_1025_12
Aquabacterium sp. NJ1, Aquabacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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5998..6477
DNA (480bp) protein (160aa)
Uncharacterized protein n=1 Tax=Ralstonia solanacearum CMR15 RepID=D8N5T7_RALSL
Uncharacterized protein {ECO:0000313|EMBL:KGM40510.1}; TaxID=1538295 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Aquabacterium.;" source="Aquabacterium sp. NJ1.;"
hypothetical protein
SCN18_13_7_16_R1_B_scaffold_1025_13
unknown

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6481..6690
DNA (210bp) protein (70aa)

This feature has no annotations

SCN18_13_7_16_R1_B_scaffold_1025_14
Burkholderia sp. lig30, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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6687..7184
DNA (498bp) protein (166aa)
Uncharacterized protein {ECO:0000313|EMBL:KDB07090.1}; TaxID=1192124 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. lig30.;"
SCN18_13_7_16_R1_B_scaffold_1025_15
SCNpilot_P_inoc_Acidovorax_64_34, SCNpilot_P_inoc_Acidovorax_64_34, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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7205..7756
DNA (552bp) protein (184aa)
DNA repair protein radc; K03630 DNA repair protein RadC id=5082453 bin=GWF1_Burkholderiales_GWF1_66_17 species=unknown genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
radC; DNA repair protein RadC
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_33_curated
SCN18_13_7_16_R1_B_scaffold_1025_16
CN-SCN_Eukaryote_66x, CN-SCN_Eukaryote_66x, CN-SCN_Eukaryote_66x, CN-SCN_Eukaryote_66x, CN-SCN_Eukaryote_66x, Eukaryote

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7753..8532
DNA (780bp) protein (260aa)
SCN18_13_7_16_R1_B_scaffold_1025_17
unknown

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8623..9615
DNA (993bp) protein (331aa)

This feature has no annotations

SCN18_13_7_16_R1_B_scaffold_1025_18
SCN_Comamonadaceae_20x, SCN_Comamonadaceae_20x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9709..10044
DNA (336bp) protein (112aa)
Uncharacterized protein {ECO:0000313|EMBL:KJA09202.1}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
prophage regulatory protein-like protein id=12551036 bin=BDI species=Pseudomonas aeruginosa genus=Pseudomonas taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
prophage regulatory protein-like protein
SCN18_13_7_16_R1_B_scaffold_1025_19
unknown

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10037..10462
DNA (426bp) protein (142aa)

This feature has no annotations

SCN18_13_7_16_R1_B_scaffold_1025_20
SCNPILOT_EXPT_750_BF_Nitrosomonadales_56_52, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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10469..13429
DNA (2961bp) protein (987aa)
primase C 2 (PriCT-2) family id=12551032 bin=BDI species=Burkholderia thailandensis genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
primase C terminal 2 family protein
Tax=GWE1_Burkholderiales_65_30_curated
SCN18_13_7_16_R1_B_scaffold_1025_trna_1
unknown

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comp(14823..14906)
DNA (84bp)
transferRNA Leu
SCN18_13_7_16_R1_B_scaffold_1025_21
SCN_Comamonadaceae_20x, SCN_Comamonadaceae_20x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14948..15850
DNA (903bp) protein (301aa)
Cysteine synthase {ECO:0000256|RuleBase:RU003985}; EC=2.5.1.47 {ECO:0000256|RuleBase:RU003985};; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
cysteine synthase (EC:2.5.1.47)
cysteine synthase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00035E8FEE
SCN18_13_7_16_R1_B_scaffold_1025_22
SCN_Variovorax_21x, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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15916..16464
DNA (549bp) protein (183aa)
ADP-ribose pyrophosphatase n=1 Tax=Variovorax paradoxus RepID=UPI0003719E09
Zn-finger containing NTP pyrophosphohydrolase {ECO:0000313|EMBL:EJL78061.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
NUDIX hydrolase
SCN18_13_7_16_R1_B_scaffold_1025_23
SCNPILOT_SOLID2_TRIM150_Burkholderiales_66_35, SCNPILOT_SOLID2_TRIM150_Burkholderiales_66_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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16479..17420
DNA (942bp) protein (314aa)
phosphoesterase n=1 Tax=Burkholderia sp. WSM4176 RepID=UPI000377F966
Metallophosphoesterase {ECO:0000313|EMBL:EHL23507.1}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
metallophosphoesterase
SCN18_13_7_16_R1_B_scaffold_1025_24
Thiorhodovibrio sp. 970, Thiorhodovibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17445..17735
DNA (291bp) protein (97aa)
Uncharacterized protein n=1 Tax=Thiorhodovibrio sp. 970 RepID=H8Z671_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIC19638.1}; TaxID=631362 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiorhodovibrio.;" source="Thiorhodovibrio sp. 970.;"
SCN18_13_7_16_R1_B_scaffold_1025_25
CN-SCN_Lautropia_89x, CN-SCN_Lautropia_89x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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17758..19410
DNA (1653bp) protein (551aa)
NERD domain protein n=1 Tax=Thauera sp. (strain MZ1T) RepID=C4ZJS9_THASP
NERD domain-containing protein
Tax=RIFOXYC12_FULL_Burkholderiales_65_23_curated
SCN18_13_7_16_R1_B_scaffold_1025_26
CN-SCN_Comamonas_56x, CN-SCN_Comamonas_56x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19532..20146
DNA (615bp) protein (205aa)
esterase n=1 Tax=Comamonas sp. B-9 RepID=UPI0003956609
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EZP54268.1}; TaxID=1468410 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia sp. RIT313.;"
SCN18_13_7_16_R1_B_scaffold_1025_27
CN-SCN_Comamonas_56x, CN-SCN_Comamonas_56x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20219..20935
DNA (717bp) protein (239aa)
Uncharacterized protein {ECO:0000313|EMBL:KJA10177.1}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
Displaying 28 items

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