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SCN18_13_7_16_R1_B_scaffold_1053

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_13_7_16_R1_B_scaffold_1053_1
unknown

Not on your lists

comp(1..84)
DNA (84bp) protein (28aa)

This feature has no annotations

SCN18_13_7_16_R1_B_scaffold_1053_2
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(126..230)
DNA (105bp) protein (35aa)
Uncharacterized protein n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9IB45_BORPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ETU97042.1}; TaxID=1402581 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa PS42.;"
SCN18_13_7_16_R1_B_scaffold_1053_3
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(227..1021)
DNA (795bp) protein (265aa)
Uncharacterized protein n=8 Tax=Proteobacteria RepID=J7DDC7_PSEAI
transposon
Integrating conjugative element protein {ECO:0000313|EMBL:ETU97043.1}; TaxID=1402581 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa PS42.;"
SCN18_13_7_16_R1_B_scaffold_1053_4
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1452..2684)
DNA (1233bp) protein (411aa)
Uncharacterized protein n=2 Tax=Pseudomonas aeruginosa RepID=U8RBX1_PSEAI
Uncharacterized protein {ECO:0000313|EMBL:ETU97044.1}; TaxID=1402581 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa PS42.;"
hypothetical protein
SCN18_13_7_16_R1_B_scaffold_1053_5
SCNpilot_BF_INOC_Plasmid_64_14, SCNpilot_BF_INOC_Plasmid_64_14, SCNpilot_BF_INOC_Plasmid_64_14, SCNpilot_BF_INOC_Plasmid_64_14, SCNpilot_BF_INOC_Plasmid_64_14, Plasmid-like

Not on your lists

comp(2688..3248)
DNA (561bp) protein (187aa)
COG0635: Coproporphyrinogen III oxidase and related Fe-S oxidoreductases n=50 Tax=Proteobacteria RepID=B7V579_PSEA8
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EJO29616.1}; TaxID=1156919 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter piechaudii HLE.;"
SCN18_13_7_16_R1_B_scaffold_1053_6
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3263..4942)
DNA (1680bp) protein (560aa)
Predicted transcriptional regulator n=3 Tax=Pseudomonas aeruginosa RepID=E2ZUF4_PSEAI
Integrating conjugative element, PFGI_1 class, ParB family protein {ECO:0000313|EMBL:ETU97046.1}; TaxID=1402581 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa PS42.;"
hypothetical protein
SCN18_13_7_16_R1_B_scaffold_1053_7
SCNpilot_BF_INOC_Plasmid_64_14, SCNpilot_BF_INOC_Plasmid_64_14, SCNpilot_BF_INOC_Plasmid_64_14, SCNpilot_BF_INOC_Plasmid_64_14, SCNpilot_BF_INOC_Plasmid_64_14, Plasmid-like

Not on your lists

comp(4935..5204)
DNA (270bp) protein (90aa)
Uncharacterized protein n=48 Tax=Proteobacteria RepID=A1W5L3_ACISJ
FIG034647: hypothetical protein in PFGI-1-like cluster
Uncharacterized protein {ECO:0000313|EMBL:AIN57424.1}; TaxID=1388763 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas mosselii SJ10.;"
SCN18_13_7_16_R1_B_scaffold_1053_8
SCNpilot_BF_INOC_Plasmid_64_14, SCNpilot_BF_INOC_Plasmid_64_14, SCNpilot_BF_INOC_Plasmid_64_14, SCNpilot_BF_INOC_Plasmid_64_14, SCNpilot_BF_INOC_Plasmid_64_14, Plasmid-like

Not on your lists

comp(5188..6063)
DNA (876bp) protein (292aa)
Cobyrinic acid a,c-diamide synthase n=11 Tax=Proteobacteria RepID=A1W5L4_ACISJ
cobyrinic acid a,c-diamide synthase
Uncharacterized protein {ECO:0000313|EMBL:ETU97048.1}; TaxID=1402581 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa PS42.;"
SCN18_13_7_16_R1_B_scaffold_1053_9
SCNpilot_BF_INOC_Plasmid_64_14, SCNpilot_BF_INOC_Plasmid_64_14, SCNpilot_BF_INOC_Plasmid_64_14, SCNpilot_BF_INOC_Plasmid_64_14, SCNpilot_BF_INOC_Plasmid_64_14, Plasmid-like

Not on your lists

comp(6106..6318)
DNA (213bp) protein (71aa)
Phage transcriptional regulator, AlpA n=59 Tax=Proteobacteria RepID=A1W5L5_ACISJ
Transcriptional regulator in PFGI-1-like cluster
Phage-related protein {ECO:0000313|EMBL:EIK90794.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
SCN18_13_7_16_R1_B_scaffold_1053_10
SCNpilot_BF_INOC_Plasmid_64_14, SCNpilot_BF_INOC_Plasmid_64_14, SCNpilot_BF_INOC_Plasmid_64_14, SCNpilot_BF_INOC_Plasmid_64_14, SCNpilot_BF_INOC_Plasmid_64_14, Plasmid-like

Not on your lists

comp(6437..7183)
DNA (747bp) protein (249aa)
Uncharacterized protein n=10 Tax=Proteobacteria RepID=A1W5L6_ACISJ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ETU97050.1}; TaxID=1402581 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa PS42.;"
SCN18_13_7_16_R1_B_scaffold_1053_11
SCNpilot_BF_INOC_Plasmid_64_14, SCNpilot_BF_INOC_Plasmid_64_14, SCNpilot_BF_INOC_Plasmid_64_14, SCNpilot_BF_INOC_Plasmid_64_14, SCNpilot_BF_INOC_Plasmid_64_14, Plasmid-like

Not on your lists

7634..8134
DNA (501bp) protein (167aa)
Uncharacterized protein n=46 Tax=Proteobacteria RepID=A1W5L7_ACISJ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIN57428.1}; TaxID=1388763 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas mosselii SJ10.;"
SCN18_13_7_16_R1_B_scaffold_1053_trna_1
unknown

Not on your lists

8624..8694
DNA (71bp)
transferRNA Cys
SCN18_13_7_16_R1_B_scaffold_1053_trna_2
unknown

Not on your lists

8790..8879
DNA (90bp)
transferRNA Leu
SCN18_13_7_16_R1_B_scaffold_1053_12
Acidovorax sp. KKS102_CN-SCN_Acidovorax_28x, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8906..9532
DNA (627bp) protein (209aa)
Uncharacterized protein n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T0K2_ACIDE
Uncharacterized protein {ECO:0000313|EMBL:EER62020.1}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
hypothetical protein
SCN18_13_7_16_R1_B_scaffold_1053_13
Delftia acidovorans_SCNPILOT_CONT_500_P_Delftia_66_8.1, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9569..11149)
DNA (1581bp) protein (527aa)
fumarase (EC:4.2.1.2)
Fumarase {ECO:0000313|EMBL:ABM41291.1}; EC=4.2.1.2 {ECO:0000313|EMBL:ABM41291.1};; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
Fumarase n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1W4W6_ACISJ
SCN18_13_7_16_R1_B_scaffold_1053_14
Delftia acidovorans_SCNPILOT_CONT_500_P_Delftia_66_8.1, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11263..12657
DNA (1395bp) protein (465aa)
Fumarate hydratase class II {ECO:0000256|HAMAP-Rule:MF_00743}; Short=Fumarase C {ECO:0000256|HAMAP-Rule:MF_00743};; EC=4.2.1.2 {ECO:0000256|HAMAP-Rule:MF_00743};; TaxID=1009852 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni ATCC 11996.;"
Fumarate hydratase class II n=1 Tax=Comamonas testosteroni S44 RepID=D8CZS8_COMTE
fumarate hydratase, class II
SCN18_13_7_16_R1_B_scaffold_1053_15
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12904..14886
DNA (1983bp) protein (661aa)
Acetyl-coenzyme A synthetase n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T0J4_ACIDE
acetate--CoA ligase
Tax=GWA2_Curvibacter_64_110_curated
SCN18_13_7_16_R1_B_scaffold_1053_16
CN-SCN_Acidovorax_22x, CN-SCN_Acidovorax_22x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14955..15266)
DNA (312bp) protein (104aa)
Cytochrome c, class I n=2 Tax=Acidovorax RepID=A1W4X9_ACISJ
cytochrome c class I
Cytochrome c class I {ECO:0000313|EMBL:ACM32463.1}; Flags: Precursor;; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
SCN18_13_7_16_R1_B_scaffold_1053_17
Acidovorax sp. KKS102_CN-SCN_Acidovorax_28x, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15374..15631
DNA (258bp) protein (86aa)
Uncharacterized protein n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T0J0_ACIDE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EER62008.1}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
SCN18_13_7_16_R1_B_scaffold_1053_18
SCN_Comamonadaceae_20x, SCN_Comamonadaceae_20x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15828..16463)
DNA (636bp) protein (212aa)
pyridoxamine 5'-phosphate oxidase (EC:1.4.3.5)
pyridoxamine 5''''-phosphate oxidase n=1 Tax=Curvibacter lanceolatus RepID=UPI0003793EC1
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
SCN18_13_7_16_R1_B_scaffold_1053_19
Hydrogenophaga sp. PBC_SCNpilot_P_inoc_Hydrogenophaga_70_12, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16483..17112)
DNA (630bp) protein (210aa)
ChaC family protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MLQ4_9BURK
ChaC family protein
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
SCN18_13_7_16_R1_B_scaffold_1053_20
SCNpilot_P_inoc_Acidovorax_64_34, SCNpilot_P_inoc_Acidovorax_64_34, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17162..17698
DNA (537bp) protein (179aa)
Outer membrane protein/peptidoglycan-associated lipoprotein n=1 Tax=Acidovorax sp. CF316 RepID=J0KP20_9BURK
OmpA/MotB domain-containing protein
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
SCN18_13_7_16_R1_B_scaffold_1053_21
Acidovorax sp. KKS102_CN-SCN_Acidovorax_28x, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17979..19205
DNA (1227bp) protein (409aa)
Putative uncharacterized protein (Fragment) n=1 Tax=Ricinus communis RepID=B9THI9_RICCO
hypothetical protein
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
SCN18_13_7_16_R1_B_scaffold_1053_22
SCN_Variovorax_21x, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19132..19440)
DNA (309bp) protein (103aa)
hypothetical protein n=1 Tax=beta proteobacterium L13 RepID=UPI000371C2C2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIJ46906.1}; TaxID=1392005 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni TK102.;"
SCN18_13_7_16_R1_B_scaffold_1053_23
CN-SCN_Comamonas_56x, CN-SCN_Comamonas_56x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19437..19607)
DNA (171bp) protein (57aa)
excisionase n=1 Tax=Acidovorax radicis RepID=UPI00023777ED
phage excisionase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCN18_13_7_16_R1_B_scaffold_1053_24
CN-SCN_Comamonas_56x, CN-SCN_Comamonas_56x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20068..20484
DNA (417bp) protein (139aa)
DNA repair protein RadC n=1 Tax=Delftia acidovorans CCUG 274B RepID=S2WGS8_DELAC
DNA repair protein RadC {ECO:0000313|EMBL:GAO22449.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
DNA repair protein Radc
Displaying 26 items

View Taxonomy