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SCN18_13_7_16_R1_B_scaffold_1223

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_13_7_16_R1_B_scaffold_1223_1
SCNPILOT_CONT_300_BF_Nitrosospira_plasmid_56_185, SCNPILOT_CONT_300_BF_Nitrosospira_plasmid_56_185, SCNPILOT_CONT_300_BF_Nitrosospira_plasmid_56_185, SCNPILOT_CONT_300_BF_Nitrosospira_plasmid_56_185, SCNPILOT_CONT_300_BF_Nitrosospira_plasmid_56_185, Plasmid-like

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2..871
DNA (870bp) protein (290aa)
Replication initiator and transcriptional repressor protein n=3 Tax=Pseudomonas aeruginosa RepID=U8L5Z1_PSEAI
RepA replication protein {ECO:0000313|EMBL:KIZ33119.1}; TaxID=316 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri (Pseudomonas perfectomarina).;"
replication protein A
SCN18_13_7_16_R1_B_scaffold_1223_2
CN-SCN_Plasmids_251x, CN-SCN_Plasmids_251x, CN-SCN_Plasmids_251x, CN-SCN_Plasmids_251x, CN-SCN_Plasmids_251x, Mobile_element

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1125..1763
DNA (639bp) protein (213aa)
Plasmid partitioning protein n=1 Tax=Pseudomonas aeruginosa BWHPSA022 RepID=U8RDS6_PSEAI
cobyrinic acid ac-diamide synthase
Cobyrinic acid ac-diamide synthase {ECO:0000313|EMBL:BAP44820.1}; TaxID=1028989 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. StFLB209.;"
SCN18_13_7_16_R1_B_scaffold_1223_3
SCNPILOT_CONT_300_BF_Nitrosospira_plasmid_56_185, SCNPILOT_CONT_300_BF_Nitrosospira_plasmid_56_185, SCNPILOT_CONT_300_BF_Nitrosospira_plasmid_56_185, SCNPILOT_CONT_300_BF_Nitrosospira_plasmid_56_185, SCNPILOT_CONT_300_BF_Nitrosospira_plasmid_56_185, Plasmid-like

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1760..2044
DNA (285bp) protein (95aa)
parB partition protein n=1 Tax=Pseudomonas aeruginosa RepID=UPI00036E8C1D
Uncharacterized protein {ECO:0000313|EMBL:AKC05753.1}; TaxID=287 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa.;"
parB partition protein
SCN18_13_7_16_R1_B_scaffold_1223_4
SCNPILOT_CONT_300_BF_Nitrosospira_plasmid_56_185, SCNPILOT_CONT_300_BF_Nitrosospira_plasmid_56_185, SCNPILOT_CONT_300_BF_Nitrosospira_plasmid_56_185, SCNPILOT_CONT_300_BF_Nitrosospira_plasmid_56_185, SCNPILOT_CONT_300_BF_Nitrosospira_plasmid_56_185, Plasmid-like

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2041..2586
DNA (546bp) protein (182aa)
Uncharacterized protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TV75_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADV00607.1}; Flags: Precursor;; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCN18_13_7_16_R1_B_scaffold_1223_5
SCNPILOT_CONT_300_BF_Nitrosospira_plasmid_56_185, SCNPILOT_CONT_300_BF_Nitrosospira_plasmid_56_185, SCNPILOT_CONT_300_BF_Nitrosospira_plasmid_56_185, SCNPILOT_CONT_300_BF_Nitrosospira_plasmid_56_185, SCNPILOT_CONT_300_BF_Nitrosospira_plasmid_56_185, Plasmid-like

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2583..3170
DNA (588bp) protein (196aa)
Conjugative transfer signal peptidase TraF n=4 Tax=Pseudomonas aeruginosa RepID=U8EH46_PSEAI
peptidase
Peptidase {ECO:0000313|EMBL:AJG13750.1}; TaxID=70775 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas plecoglossicida.;"
SCN18_13_7_16_R1_B_scaffold_1223_6
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3619..5604
DNA (1986bp) protein (662aa)
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa BWHPSA010 RepID=U9MGS4_PSEAI
PF11843 family protein {ECO:0000313|EMBL:KDD60163.1}; TaxID=1331242 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica OSU553.;"
hypothetical protein
SCN18_13_7_16_R1_B_scaffold_1223_7
Castellaniella defragrans_SCNPILOT_SOLID2_TRIM150_Castellaniella_66_80, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(6042..6722)
DNA (681bp) protein (227aa)
Transcriptional regulator, TetR family n=3 Tax=Proteobacteria RepID=Q13VS9_BURXL
TetR family transcriptional regulator
TetR family transcriptional regulator {ECO:0000313|EMBL:CDF84957.1}; TaxID=1301098 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas knackmussii (strain DSM 6978 / LMG 23759 / B13).;"
SCN18_13_7_16_R1_B_scaffold_1223_8
Castellaniella defragrans_SCNPILOT_SOLID2_TRIM150_Castellaniella_66_80, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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6922..8457
DNA (1536bp) protein (512aa)
NodT family efflux transporter, outer membrane factor (OMF) lipoprotein n=1 Tax=Aeromonas hydrophila SSU RepID=K1JH94_AERHY
Multidrug transporter {ECO:0000313|EMBL:KGM52067.1}; TaxID=1122185 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter concretionis Ko07 = DSM 16239.;"
RND transporter
SCN18_13_7_16_R1_B_scaffold_1223_9
Castellaniella defragrans_SCNPILOT_SOLID2_TRIM150_Castellaniella_66_80, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8454..10025
DNA (1572bp) protein (524aa)
Uncharacterized protein n=1 Tax=Aeromonas hydrophila SSU RepID=K1JAH4_AERHY
Inner membrane component of tripartite multidrug resistance system
Inner membrane component of tripartite multidrug resistance system {ECO:0000313|EMBL:CDM23713.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
SCN18_13_7_16_R1_B_scaffold_1223_10
Castellaniella defragrans_SCNPILOT_SOLID2_TRIM150_Castellaniella_66_80, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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10033..11085
DNA (1053bp) protein (351aa)
Secretion protein HlyD family protein n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1W9Y6_ACISJ
Membrane fusion component of tripartite multidrug resistance system
Membrane fusion component of tripartite multidrug resistance system {ECO:0000313|EMBL:CDM23714.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
SCN18_13_7_16_R1_B_scaffold_1223_11
Castellaniella defragrans_SCNPILOT_SOLID2_TRIM150_Castellaniella_66_80, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11732..12043
DNA (312bp) protein (104aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1W9Y5_ACISJ
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_99_curated
SCN18_13_7_16_R1_B_scaffold_1223_12
SCNPILOT_EXPT_750_BF_Xanthomonadales_66_150, SCNPILOT_EXPT_750_BF_Xanthomonadales_66_150, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12272..13024
DNA (753bp) protein (251aa)
Transcriptional regulator n=8 Tax=Pseudomonas aeruginosa RepID=S0ICJ3_PSEAI
bphR; transcriptional regulator
D-alanyl-D-alanine endopeptidase {ECO:0000313|EMBL:AKE69540.1}; TaxID=287 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa.;"
SCN18_13_7_16_R1_B_scaffold_1223_13
SCNPILOT_EXPT_750_BF_Xanthomonadales_66_150, SCNPILOT_EXPT_750_BF_Xanthomonadales_66_150, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13021..13299
DNA (279bp) protein (93aa)
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa U2504 RepID=U8ZVK1_PSEAI
hypothetical protein
Lipoprotein {ECO:0000313|EMBL:KIZ32687.1}; TaxID=316 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri (Pseudomonas perfectomarina).;"
SCN18_13_7_16_R1_B_scaffold_1223_14
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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13536..15551
DNA (2016bp) protein (672aa)
Conjugal transfer coupling protein TraG n=5 Tax=Gammaproteobacteria RepID=U8VHF4_PSEAI
conjugal transfer protein TraG
Conjugal transfer protein TraG {ECO:0000313|EMBL:AJG13724.1}; TaxID=70775 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas plecoglossicida.;"
SCN18_13_7_16_R1_B_scaffold_1223_15
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15548..16009
DNA (462bp) protein (154aa)
CopG family transcripitonal regulator n=1 Tax=Thauera terpenica 58Eu RepID=S9ZC90_9RHOO
CopG family transcripitonal regulator {ECO:0000313|EMBL:EPZ14910.1}; TaxID=1348657 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera terpenica 58Eu.;"
hypothetical protein
SCN18_13_7_16_R1_B_scaffold_1223_16
SCN_Comamonadaceae_20x, SCN_Comamonadaceae_20x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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16006..17076
DNA (1071bp) protein (357aa)
P-type conjugative transfer ATPase TrbB n=8 Tax=Pseudomonas aeruginosa RepID=S0I142_PSEAI
conjugal transfer protein
Conjugal transfer protein TrbB {ECO:0000313|EMBL:AKE69537.1}; TaxID=287 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa.;"
SCN18_13_7_16_R1_B_scaffold_1223_17
SCNPILOT_EXPT_500_P_Plasmid_65_940, SCNPILOT_EXPT_500_P_Plasmid_65_940, SCNPILOT_EXPT_500_P_Plasmid_65_940, SCNPILOT_EXPT_500_P_Plasmid_65_940, SCNPILOT_EXPT_500_P_Plasmid_65_940, Plasmid-like

Not on your lists

17073..17321
DNA (249bp) protein (83aa)
Conjugal transfer protein TrbC n=22 Tax=Proteobacteria RepID=A6V7M4_PSEA7
trbC; mating pair formation conjugal transfer TrbC transmembrane protein
Conjugal transfer protein TrbC {ECO:0000313|EMBL:AGI23814.1}; TaxID=1294143 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas denitrificans ATCC 13867.;"
Displaying 17 items

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