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SCN18_13_7_16_R1_B_scaffold_820

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_13_7_16_R1_B_scaffold_820_1
SCNPILOT_SOLID_1_TRIM150_Actinobacteria_71_9, SCNPILOT_SOLID_1_TRIM150_Actinobacteria_71_9, SCNPILOT_SOLID_1_TRIM150_Actinobacteria_71_9, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3..1043)
DNA (1041bp) protein (347aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
DNA-directed RNA polymerase subunit beta' n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FET3_CONWI
DNA-directed RNA polymerase subunit beta'
SCN18_13_7_16_R1_B_scaffold_820_2
SCNPILOT_SOLID_1_TRIM150_Actinobacteria_71_9, SCNPILOT_SOLID_1_TRIM150_Actinobacteria_71_9, SCNPILOT_SOLID_1_TRIM150_Actinobacteria_71_9, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1043..4579)
DNA (3537bp) protein (1179aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FET2_CONWI
SCN18_13_7_16_R1_B_scaffold_820_3
SCNPILOT_SOLID_1_TRIM150_Actinobacteria_71_9, SCNPILOT_SOLID_1_TRIM150_Actinobacteria_71_9, SCNPILOT_SOLID_1_TRIM150_Actinobacteria_71_9, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(4839..5228)
DNA (390bp) protein (130aa)
50S ribosomal protein L7/L12 n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FET1_CONWI
50S ribosomal protein L7/L12
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
SCN18_13_7_16_R1_B_scaffold_820_4
SCNPILOT_SOLID_1_TRIM150_Actinobacteria_71_9, SCNPILOT_SOLID_1_TRIM150_Actinobacteria_71_9, SCNPILOT_SOLID_1_TRIM150_Actinobacteria_71_9, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(5234..5908)
DNA (675bp) protein (225aa)
50S ribosomal protein L10 n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FET0_CONWI
50S ribosomal protein L10
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00362, ECO:0000256|RuleBase:RU003636}; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
SCN18_13_7_16_R1_B_scaffold_820_5
unknown

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comp(6163..7482)
DNA (1320bp) protein (440aa)

This feature has no annotations

SCN18_13_7_16_R1_B_scaffold_820_6
unknown

Not on your lists

comp(7651..8946)
DNA (1296bp) protein (432aa)

This feature has no annotations

SCN18_13_7_16_R1_B_scaffold_820_7
SCNPILOT_SOLID_1_TRIM150_Actinobacteria_71_9, SCNPILOT_SOLID_1_TRIM150_Actinobacteria_71_9, SCNPILOT_SOLID_1_TRIM150_Actinobacteria_71_9, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(9105..9842)
DNA (738bp) protein (246aa)
50S ribosomal protein L1 n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FES9_CONWI
50S ribosomal protein L1
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
SCN18_13_7_16_R1_B_scaffold_820_8
SCNPILOT_SOLID_1_TRIM150_Actinobacteria_71_9, SCNPILOT_SOLID_1_TRIM150_Actinobacteria_71_9, SCNPILOT_SOLID_1_TRIM150_Actinobacteria_71_9, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(9845..10267)
DNA (423bp) protein (141aa)
50S ribosomal protein L11 n=1 Tax=Patulibacter medicamentivorans RepID=H0EBX5_9ACTN
50S ribosomal protein L11
Tax=RBG_16_Actinobacteria_68_12_curated
SCN18_13_7_16_R1_B_scaffold_820_9
SCNpilot_BF_INOC_Solirubrobacterales_68_7, SCNpilot_BF_INOC_Solirubrobacterales_68_7, SCNpilot_BF_INOC_Solirubrobacterales_68_7, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10297..10818)
DNA (522bp) protein (174aa)
Transcription termination/antitermination protein NusG n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FES7_CONWI
Uncharacterized protein {ECO:0000313|EMBL:KKM05546.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
NusG antitermination factor
SCN18_13_7_16_R1_B_scaffold_820_10
SCNpilot_BF_INOC_Solirubrobacterales_68_7, SCNpilot_BF_INOC_Solirubrobacterales_68_7, SCNpilot_BF_INOC_Solirubrobacterales_68_7, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10827..11336)
DNA (510bp) protein (170aa)
Protein translocase subunit SecE n=1 Tax=Propionibacterium sp. KPL1844 RepID=U7JR89_9ACTO
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=1203573 species="Bacteria; Actinobacteria; Propionibacteriales; Propionibacteriaceae; Propionibacterium.;" source="Propionibacterium sp. KPL1844.;"
Preprotein translocase subunit SecE
SCN18_13_7_16_R1_B_scaffold_820_11
SCNPILOT_SOLID_1_TRIM150_Actinobacteria_71_9, SCNPILOT_SOLID_1_TRIM150_Actinobacteria_71_9, SCNPILOT_SOLID_1_TRIM150_Actinobacteria_71_9, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(11336..11500)
DNA (165bp) protein (55aa)
50S ribosomal protein L33 n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FES5_CONWI
50S ribosomal protein L33
50S ribosomal protein L33 {ECO:0000256|HAMAP-Rule:MF_00294}; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
SCN18_13_7_16_R1_B_scaffold_820_12
SCN_Variovorax_21x, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11701..17673)
DNA (5973bp) protein (1991aa)
Putative internalin n=1 Tax=Myxococcus sp. (contaminant ex DSM 436) RepID=U2U331_9DELT
Putative internalin {ECO:0000313|EMBL:ERK92369.1}; TaxID=1297742 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus sp. (contaminant ex DSM 436).;"
cable pili-associated 22 kda adhesin protein
SCN18_13_7_16_R1_B_scaffold_820_13
SCNPILOT_EXPT_750_BF_Xanthomonadales_66_150, SCNPILOT_EXPT_750_BF_Xanthomonadales_66_150, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17695..22434)
DNA (4740bp) protein (1580aa)
hypothetical protein n=1 Tax=Chlorogloeopsis RepID=UPI0003165AFA
hypothetical protein
Conserved repeat domain protein {ECO:0000313|EMBL:ACL02916.1}; Flags: Precursor;; TaxID=439235 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobacteraceae; Desulfatibacillum.;" source="Desulfatibacillum alkenivorans (strain AK-01).;"
SCN18_13_7_16_R1_B_scaffold_820_14
SCNPILOT_EXPT_750_BF_Xanthomonadales_66_150, SCNPILOT_EXPT_750_BF_Xanthomonadales_66_150, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22473..26150)
DNA (3678bp) protein (1226aa)
Putative internalin n=1 Tax=Myxococcus sp. (contaminant ex DSM 436) RepID=U2U331_9DELT
Putative internalin {ECO:0000313|EMBL:ERK92369.1}; TaxID=1297742 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus sp. (contaminant ex DSM 436).;"
OmpA domain-containing protein
SCN18_13_7_16_R1_B_scaffold_820_15
SCNPILOT_EXPT_750_BF_Xanthomonadales_66_150, SCNPILOT_EXPT_750_BF_Xanthomonadales_66_150, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26505..27185)
DNA (681bp) protein (227aa)
BclA protein n=5 Tax=Bacillus cereus group RepID=Q735K0_BACC1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIM15263.1}; TaxID=1565991 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus sp. X1(2014).;"
SCN18_13_7_16_R1_B_scaffold_820_16
SCNPILOT_SOLID2_TRIM150_Actinobacteria_69_241, SCNPILOT_SOLID2_TRIM150_Actinobacteria_69_241, SCNPILOT_SOLID2_TRIM150_Actinobacteria_69_241, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27295..33240)
DNA (5946bp) protein (1982aa)
Collagen triple helix repeat domain protein n=1 Tax=Bacillus cereus W RepID=B3YPT0_BACCE
RBAM_007760; GXT repeat-containing collagen-like protein
Collagen-like protein {ECO:0000313|EMBL:ABK87505.1}; TaxID=412694 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus cereus group.;" source="Bacillus thuringiensis (strain Al Hakam).;"
SCN18_13_7_16_R1_B_scaffold_820_17
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(33475..35787)
DNA (2313bp) protein (771aa)
Uncharacterized protein {ECO:0000313|EMBL:KKK55014.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
SCN18_13_7_16_R1_B_scaffold_820_18
unknown

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comp(35976..36566)
DNA (591bp) protein (197aa)

This feature has no annotations

SCN18_13_7_16_R1_B_scaffold_820_19
unknown

Not on your lists

comp(36688..38046)
DNA (1359bp) protein (453aa)

This feature has no annotations

SCN18_13_7_16_R1_B_scaffold_820_20
unknown

Not on your lists

comp(38114..38776)
DNA (663bp) protein (221aa)

This feature has no annotations

SCN18_13_7_16_R1_B_scaffold_820_21
CN-SCN_Rhodanobacter_45x, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

39591..40082
DNA (492bp) protein (164aa)
Uncharacterized protein n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F4S7_CONWI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB52534.1}; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
SCN18_13_7_16_R1_B_scaffold_820_22
CN-SCN_Rhodanobacter_45x, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

40082..40342
DNA (261bp) protein (87aa)
Transcriptional regulator, XRE family n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F4S8_CONWI
XRE family transcriptional regulator
Transcriptional regulator, XRE family {ECO:0000313|EMBL:ADB52535.1}; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
SCN18_13_7_16_R1_B_scaffold_820_23
Stackebrandtia nassauensis, Stackebrandtia, Glycomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

40597..40950
DNA (354bp) protein (118aa)
hypothetical protein n=1 Tax=Patulibacter americanus RepID=UPI0003B4213D
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADD45567.1}; Flags: Precursor;; TaxID=446470 species="Bacteria; Actinobacteria; Glycomycetales; Glycomycetaceae; Stackebrandtia.;" source="Stackebrandtia nassauensis (strain DSM 44728 / NRRL B-16338 / NBRC; 102104 / LLR-40K-21).;"
SCN18_13_7_16_R1_B_scaffold_820_24
SCNPILOT_CONT_500_BF_Actinomycetales_73_43, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

40950..42050
DNA (1101bp) protein (367aa)
LigA n=1 Tax=Patulibacter americanus RepID=UPI0003B361C7
Uncharacterized protein {ECO:0000313|EMBL:KKA38318.1}; TaxID=1354891 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. MUSC164.;"
peptidoglycan-binding domain 1 protein
SCN18_13_7_16_R1_B_scaffold_820_25
SCNPILOT_SOLID_1_TRIM150_Actinobacteria_71_9, SCNPILOT_SOLID_1_TRIM150_Actinobacteria_71_9, SCNPILOT_SOLID_1_TRIM150_Actinobacteria_71_9, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

42047..42772
DNA (726bp) protein (242aa)
ABC transporter n=1 Tax=Patulibacter americanus RepID=UPI0003B6E129
ABC transporter
ABC transporter related protein {ECO:0000313|EMBL:ADP79502.1}; TaxID=298654 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EuI1c).;"
SCN18_13_7_16_R1_B_scaffold_820_26
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

42769..43992
DNA (1224bp) protein (408aa)
hypothetical protein n=1 Tax=Patulibacter americanus RepID=UPI0003B4A7A1
hypothetical protein
ABC transporter related protein {ECO:0000313|EMBL:CDR04882.1}; TaxID=576784 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces iranensis.;"
SCN18_13_7_16_R1_B_scaffold_820_27
unknown

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44263..44487
DNA (225bp) protein (75aa)
SCN18_13_7_16_R1_B_scaffold_820_28
SCNpilot_BF_INOC_Solirubrobacterales_68_7, SCNpilot_BF_INOC_Solirubrobacterales_68_7, SCNpilot_BF_INOC_Solirubrobacterales_68_7, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(44834..46882)
DNA (2049bp) protein (683aa)
Lead cadmium zinc and mercury transporting ATPase {ECO:0000313|EMBL:EHN13023.1}; EC=3.6.3.3 {ECO:0000313|EMBL:EHN13023.1};; TaxID=1097667 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Patulibacteraceae; Patulibacter.;" source="Patulibacter medicamentivorans.;"
Lead cadmium zinc and mercury transporting ATPase n=1 Tax=Patulibacter medicamentivorans RepID=H0DZR9_9ACTN
heavy metal-translocating P-type ATPase, Cd/Co/Hg/Pb/Zn-transporting
SCN18_13_7_16_R1_B_scaffold_820_29
SCNpilot_BF_INOC_Solirubrobacterales_68_7, SCNpilot_BF_INOC_Solirubrobacterales_68_7, SCNpilot_BF_INOC_Solirubrobacterales_68_7, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(46879..47232)
DNA (354bp) protein (118aa)
ArsR family transcriptional regulator n=1 Tax=Nocardiopsis baichengensis RepID=UPI00037C2336
Regulatory protein ArsR {ECO:0000313|EMBL:EHN13022.1}; TaxID=1097667 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Patulibacteraceae; Patulibacter.;" source="Patulibacter medicamentivorans.;"
ArsR family transcriptional regulator
SCN18_13_7_16_R1_B_scaffold_820_30
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

47316..47636
DNA (321bp) protein (107aa)
ArsR family transcriptional regulator n=1 Tax=Amycolatopsis vancoresmycina DSM 44592 RepID=R1GE23_9PSEU
Toxin-antitoxin system, antitoxin component, ArsR family {ECO:0000313|EMBL:EWM12430.1}; TaxID=345341 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kutzneria.;" source="Kutzneria sp. 744.;"
regulatory protein ArsR
Displaying items 1-30 of 31 in total

View Taxonomy