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SCN18_13_7_16_R1_B_scaffold_891

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_13_7_16_R1_B_scaffold_891_1
SCNPILOT_SOLID2_TRIM150_Actinobacteria_69_241, SCNPILOT_SOLID2_TRIM150_Actinobacteria_69_241, SCNPILOT_SOLID2_TRIM150_Actinobacteria_69_241, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2..385)
DNA (384bp) protein (128aa)
UPI0003D6B8CE related cluster n=1 Tax=unknown RepID=UPI0003D6B8CE
2-nitropropane dioxygenase
2-nitropropane dioxygenase {ECO:0000313|EMBL:AHD23415.1}; TaxID=1435356 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus pyridinivorans SB3094.;"
SCN18_13_7_16_R1_B_scaffold_891_2
SCNPILOT_CONT_1000_P_Pseudonocardia_72_23, SCNPILOT_CONT_1000_P_Pseudonocardia_72_23, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

475..2301
DNA (1827bp) protein (609aa)
Acyl-CoA dehydrogenase n=1 Tax=Mycobacterium thermoresistibile ATCC 19527 RepID=G7CDE3_MYCTH
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:EHI13967.1}; TaxID=1078020 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium thermoresistibile ATCC 19527.;"
acyl-CoA dehydrogenase
SCN18_13_7_16_R1_B_scaffold_891_3
SCNpilot_BF_INOC_Solirubrobacterales_68_7, SCNpilot_BF_INOC_Solirubrobacterales_68_7, SCNpilot_BF_INOC_Solirubrobacterales_68_7, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2308..2787)
DNA (480bp) protein (160aa)
Transcriptional regulator, MarR family n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FEJ8_CONWI
MarR family transcriptional regulator
Transcriptional regulator, MarR family {ECO:0000313|EMBL:ADB49672.1}; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
SCN18_13_7_16_R1_B_scaffold_891_4
SCNpilot_BF_INOC_Solirubrobacterales_68_7, SCNpilot_BF_INOC_Solirubrobacterales_68_7, SCNpilot_BF_INOC_Solirubrobacterales_68_7, Actinobacteria, Actinobacteria, Bacteria

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comp(2768..4228)
DNA (1461bp) protein (487aa)
Multidrug resistance protein B n=1 Tax=Patulibacter medicamentivorans RepID=H0E044_9ACTN
Multidrug resistance protein B {ECO:0000313|EMBL:EHN13003.1}; TaxID=1097667 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Patulibacteraceae; Patulibacter.;" source="Patulibacter medicamentivorans.;"
EmrB/QacA subfamily drug resistance transporter
SCN18_13_7_16_R1_B_scaffold_891_5
SCNPILOT_EXPT_1000_BF_Actinomycetales_Beutenbergia_73_13, SCNPILOT_EXPT_1000_BF_Actinomycetales_Beutenbergia_73_13, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4301..4567)
DNA (267bp) protein (89aa)
Putative uncharacterized protein n=1 Tax=Isoptericola variabilis (strain 225) RepID=F6FW70_ISOV2
Rho termination factor {ECO:0000313|EMBL:KGN34204.1}; TaxID=1385520 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Knoellia.;" source="Knoellia sinensis KCTC 19936.;"
hypothetical protein
SCN18_13_7_16_R1_B_scaffold_891_6
SCNPILOT_SOLID_1_TRIM150_Microbacterium_69_53, Microbacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

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comp(4582..5004)
DNA (423bp) protein (141aa)
CBS domain-containing protein n=1 Tax=Arthrobacter phenanthrenivorans (strain DSM 18606 / JCM 16027 / LMG 23796 / Sphe3) RepID=F0MB46_ARTPP
hypothetical protein
CBS domain-containing protein {ECO:0000313|EMBL:ADX72922.1}; TaxID=930171 species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Arthrobacter.;" source="Arthrobacter phenanthrenivorans (strain DSM 18606 / JCM 16027 / LMG; 23796 / Sphe3).;"
SCN18_13_7_16_R1_B_scaffold_891_7
SCNPILOT_SOLID_1_TRIM150_Actinobacteria_71_9, SCNPILOT_SOLID_1_TRIM150_Actinobacteria_71_9, SCNPILOT_SOLID_1_TRIM150_Actinobacteria_71_9, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5131..6042)
DNA (912bp) protein (304aa)
DNA repair protein n=1 Tax=Patulibacter americanus RepID=UPI0003B72053
Non-homologous end joining protein Ku {ECO:0000256|HAMAP-Rule:MF_01875}; TaxID=882083 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharomonospora.;" source="Saccharomonospora marina XMU15.;"
DNA end-binding protein Ku
SCN18_13_7_16_R1_B_scaffold_891_8
SCNPILOT_SOLID_1_TRIM150_Actinobacteria_71_9, SCNPILOT_SOLID_1_TRIM150_Actinobacteria_71_9, SCNPILOT_SOLID_1_TRIM150_Actinobacteria_71_9, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6042..6821)
DNA (780bp) protein (260aa)
DNA repair protein n=1 Tax=Patulibacter americanus RepID=UPI0003B5797F
Ku protein
Non-homologous end joining protein Ku {ECO:0000256|HAMAP-Rule:MF_01875}; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
SCN18_13_7_16_R1_B_scaffold_891_9
SCNPILOT_CONT_1000_P_Pseudonocardia_72_23, SCNPILOT_CONT_1000_P_Pseudonocardia_72_23, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6895..7821
DNA (927bp) protein (309aa)
DNA polymerase LigD, ligase domain protein n=1 Tax=Cellulomonas fimi (strain ATCC 484 / DSM 20113 / JCM 1341 / NBRC 15513 / NCIMB 8980 / NCTC 7547) RepID=F4H018_CELFA
DNA polymerase LigD, ligase domain-containing protein
DNA polymerase LigD, ligase domain protein {ECO:0000313|EMBL:AEE44940.1}; TaxID=590998 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulomonas fimi (strain ATCC 484 / DSM 20113 / JCM 1341 / NBRC 15513; / NCIMB 8980 / NCTC 7547).;"
SCN18_13_7_16_R1_B_scaffold_891_10
SCNpilot_BF_INOC_Solirubrobacterales_68_7, SCNpilot_BF_INOC_Solirubrobacterales_68_7, SCNpilot_BF_INOC_Solirubrobacterales_68_7, Actinobacteria, Actinobacteria, Bacteria

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7818..8753
DNA (936bp) protein (312aa)
DNA primase-like n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HS48_9FIRM
DNA primase-like {ECO:0000313|EMBL:EAX47113.1}; TaxID=401526 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Thermosinus.;" source="Thermosinus carboxydivorans Nor1.;"
DNA primase-like protein
SCN18_13_7_16_R1_B_scaffold_891_11
SCNPILOT_CONT_1000_P_Pseudonocardia_72_23, SCNPILOT_CONT_1000_P_Pseudonocardia_72_23, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8750..9181
DNA (432bp) protein (144aa)
AraC family transcriptional regulator n=1 Tax=Arthrobacter sp. 131MFCol6.1 RepID=UPI00035D5544
Putative transcriptional activator RamA {ECO:0000313|EMBL:EPH41152.1}; TaxID=1286094 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces aurantiacus JA 4570.;"
AraC family transcriptional regulator
SCN18_13_7_16_R1_B_scaffold_891_12
SCNPILOT_CONT_500_P_Xanthomonadales_66_42, SCNPILOT_CONT_500_P_Xanthomonadales_66_42, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9192..9602
DNA (411bp) protein (137aa)
Glyoxalase/bleomycin resistance protein/dioxygenase n=1 Tax=Cellulomonas fimi (strain ATCC 484 / DSM 20113 / JCM 1341 / NBRC 15513 / NCIMB 8980 / NCTC 7547) RepID=F4H6C2_CELFA
glyoxalase/bleomycin resistance protein/dioxygenase
Glyoxalase/bleomycin resistance protein/dioxygenase {ECO:0000313|EMBL:AEE44434.1}; TaxID=590998 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulomonas fimi (strain ATCC 484 / DSM 20113 / JCM 1341 / NBRC 15513; / NCIMB 8980 / NCTC 7547).;"
SCN18_13_7_16_R1_B_scaffold_891_13
SCNPILOT_CONT_1000_P_Pseudonocardia_72_23, SCNPILOT_CONT_1000_P_Pseudonocardia_72_23, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9617..11983
DNA (2367bp) protein (789aa)
ABC transporter related protein n=1 Tax=Stackebrandtia nassauensis (strain DSM 44728 / NRRL B-16338 / NBRC 102104 / LLR-40K-21) RepID=D3QBK0_STANL
ABC transporter-like protein
ABC transporter related protein {ECO:0000313|EMBL:ADD42882.1}; TaxID=446470 species="Bacteria; Actinobacteria; Glycomycetales; Glycomycetaceae; Stackebrandtia.;" source="Stackebrandtia nassauensis (strain DSM 44728 / NRRL B-16338 / NBRC; 102104 / LLR-40K-21).;"
SCN18_13_7_16_R1_B_scaffold_891_14
SCNpilot_BF_INOC_Solirubrobacterales_68_7, SCNpilot_BF_INOC_Solirubrobacterales_68_7, SCNpilot_BF_INOC_Solirubrobacterales_68_7, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11980..12447
DNA (468bp) protein (156aa)
Uncharacterized protein n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F1U2_CONWI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB54123.1}; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
SCN18_13_7_16_R1_B_scaffold_891_15
Microbacterium ginsengisoli_SCNPILOT_CONT_1000_P_Microbacterium_71_138, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(12449..13072)
DNA (624bp) protein (208aa)
FMN-binding domain protein n=1 Tax=Leifsonia aquatica ATCC 14665 RepID=U2T5Z9_LEIAQ
FMN-binding domain protein {ECO:0000313|EMBL:ERK72893.1}; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
transcriptional repressor
SCN18_13_7_16_R1_B_scaffold_891_16
SCNPILOT_EXPT_300_BF_Actinomycetales_72_7_partial, SCNPILOT_EXPT_300_BF_Actinomycetales_72_7_partial, SCNPILOT_EXPT_300_BF_Actinomycetales_72_7_partial, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13159..13860
DNA (702bp) protein (234aa)
Zinc/iron permease n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F6B8_CONWI
zinc/iron permease
Zinc/iron permease {ECO:0000313|EMBL:ADB50685.1}; Flags: Precursor;; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
SCN18_13_7_16_R1_B_scaffold_891_17
Acidovorax sp. KKS102_CN-SCN_Acidovorax_28x, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(13861..14232)
DNA (372bp) protein (124aa)
translation initiation factor SUI1 n=1 Tax=Patulibacter americanus RepID=UPI0003B779D5
Translation initiation factor SUI1-related protein {ECO:0000313|EMBL:EHN12430.1}; TaxID=1097667 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Patulibacteraceae; Patulibacter.;" source="Patulibacter medicamentivorans.;"
translation initiation factor SUI1
SCN18_13_7_16_R1_B_scaffold_891_18
SCNPILOT_EXPT_1000_BF_Actinomycetales_Beutenbergia_73_13, SCNPILOT_EXPT_1000_BF_Actinomycetales_Beutenbergia_73_13, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14323..16824
DNA (2502bp) protein (834aa)
Conserved repeat domain protein n=1 Tax=Oscillatoria nigro-viridis PCC 7112 RepID=K9VI87_9CYAN
conserved repeat domain protein
Conserved repeat domain protein {ECO:0000313|EMBL:AFZ07818.1}; TaxID=179408 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Oscillatoria.;" source="Oscillatoria nigro-viridis PCC 7112.;"
SCN18_13_7_16_R1_B_scaffold_891_19
SCNPILOT_SOLID_1_TRIM150_Actinobacteria_71_9, SCNPILOT_SOLID_1_TRIM150_Actinobacteria_71_9, SCNPILOT_SOLID_1_TRIM150_Actinobacteria_71_9, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16836..17528)
DNA (693bp) protein (231aa)
Putative enoyl-CoA hydratase/isomerase family protein n=1 Tax=Patulibacter medicamentivorans RepID=H0E8M3_9ACTN
Putative enoyl-CoA hydratase/isomerase family protein {ECO:0000313|EMBL:EHN13012.1}; TaxID=1097667 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Patulibacteraceae; Patulibacter.;" source="Patulibacter medicamentivorans.;"
enoyl-CoA hydratase
SCN18_13_7_16_R1_B_scaffold_891_20
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17602..18219
DNA (618bp) protein (206aa)
Putative transcriptional regulator TetR family n=1 Tax=Patulibacter medicamentivorans RepID=H0DZQ7_9ACTN
Putative transcriptional regulator TetR family {ECO:0000313|EMBL:EHN13011.1}; TaxID=1097667 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Patulibacteraceae; Patulibacter.;" source="Patulibacter medicamentivorans.;"
TetR family transcriptional regulator
SCN18_13_7_16_R1_B_scaffold_891_21
SCNPILOT_CONT_1000_P_Pseudonocardia_72_23, SCNPILOT_CONT_1000_P_Pseudonocardia_72_23, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18216..18608)
DNA (393bp) protein (131aa)
Transcriptional regulator, PadR-like family n=1 Tax=Isoptericola variabilis (strain 225) RepID=F6FW62_ISOV2
PadR-like family transcriptional regulator
Transcriptional regulator, PadR-like family {ECO:0000313|EMBL:AEG45606.1}; TaxID=743718 species="Bacteria; Actinobacteria; Micrococcales; Promicromonosporaceae; Isoptericola.;" source="Isoptericola variabilis (strain 225).;"
SCN18_13_7_16_R1_B_scaffold_891_22
SCNPILOT_SOLID_1_TRIM150_Actinobacteria_71_9, SCNPILOT_SOLID_1_TRIM150_Actinobacteria_71_9, SCNPILOT_SOLID_1_TRIM150_Actinobacteria_71_9, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18942..20909)
DNA (1968bp) protein (656aa)
Uncharacterized protein {ECO:0000313|EMBL:CCH78560.1}; TaxID=1194083 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Tetrasphaera.;" source="Tetrasphaera japonica T1-X7.;"
hypothetical protein
SCN18_13_7_16_R1_B_scaffold_891_23
unknown

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comp(20946..21587)
DNA (642bp) protein (214aa)

This feature has no annotations

SCN18_13_7_16_R1_B_scaffold_891_24
SCNpilot_BF_INOC_Solirubrobacterales_68_7, SCNpilot_BF_INOC_Solirubrobacterales_68_7, SCNpilot_BF_INOC_Solirubrobacterales_68_7, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21601..22527
DNA (927bp) protein (309aa)
beta-lactamase n=1 Tax=Patulibacter americanus RepID=UPI0003B3D74C
Metallo-beta-lactamase-related protein {ECO:0000313|EMBL:EHN11386.1}; TaxID=1097667 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Patulibacteraceae; Patulibacter.;" source="Patulibacter medicamentivorans.;"
beta-lactamase
SCN18_13_7_16_R1_B_scaffold_891_25
SCNpilot_BF_INOC_Sphingobacteriales_46_9, SCNpilot_BF_INOC_Sphingobacteriales_46_9, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(22516..23391)
DNA (876bp) protein (292aa)
Probable epoxide hydrolase n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GEU6_9DELT
Probable epoxide hydrolase {ECO:0000313|EMBL:EDM75608.1}; TaxID=391625 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Nannocystineae; Nannocystaceae; Plesiocystis.;" source="Plesiocystis pacifica SIR-1.;"
alpha/beta hydrolase
SCN18_13_7_16_R1_B_scaffold_891_26
SCNPILOT_SOLID2_TRIM150_Actinobacteria_69_241, SCNPILOT_SOLID2_TRIM150_Actinobacteria_69_241, SCNPILOT_SOLID2_TRIM150_Actinobacteria_69_241, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23484..23657)
DNA (174bp) protein (58aa)
Uncharacterized protein n=1 Tax=Gordonia sihwensis NBRC 108236 RepID=L7LN60_9ACTO
General stress protein CsbD {ECO:0000313|EMBL:KJR07249.1}; TaxID=1617449 species="Bacteria; Actinobacteria; Corynebacteriales; Gordoniaceae; Gordonia.;" source="Gordonia sp. no. 9.;"
CsbD-like protein
SCN18_13_7_16_R1_B_scaffold_891_27
SCN_Variovorax_21x, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23719..23991)
DNA (273bp) protein (91aa)
Uncharacterized protein n=1 Tax=Variovorax paradoxus B4 RepID=T1X889_VARPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGU48544.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCN18_13_7_16_R1_B_scaffold_891_28
SCNPILOT_SOLID_1_TRIM150_Actinobacteria_71_9, SCNPILOT_SOLID_1_TRIM150_Actinobacteria_71_9, SCNPILOT_SOLID_1_TRIM150_Actinobacteria_71_9, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24104..24868
DNA (765bp) protein (255aa)
gabD; succinate-semialdehyde dehydrogenase (EC:1.2.1.16)
succinate-semialdehyde dehdyrogenase n=1 Tax=Patulibacter americanus RepID=UPI0003B58A2C
Putative aldehyde dehydrogenase {ECO:0000313|EMBL:GAB34222.1}; TaxID=1108044 species="Bacteria; Actinobacteria; Corynebacteriales; Gordoniaceae; Gordonia.;" source="Gordonia otitidis NBRC 100426.;"
Displaying 28 items

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