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SCN18_10_11_15_R5_P_scaffold_13

Search features with annotation key words

Displaying items 1-30 of 516 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_10_11_15_R5_P_scaffold_13_1
unknown

Not on your lists

comp(2..130)
DNA (129bp) protein (43aa)

This feature has no annotations

SCN18_10_11_15_R5_P_scaffold_13_2
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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356..781
DNA (426bp) protein (142aa)
Putative membrane protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YQA7_9RHIZ
Putative membrane protein {ECO:0000313|EMBL:EIM26149.1}; Flags: Precursor;; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
DoxD-like protein
SCN18_10_11_15_R5_P_scaffold_13_3
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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841..1734
DNA (894bp) protein (298aa)
Transcriptional regulator, LysR family n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A3P4_STAND
LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ADH91671.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
SCN18_10_11_15_R5_P_scaffold_13_4
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1754..2530)
DNA (777bp) protein (259aa)
hypothetical protein n=1 Tax=Rhizobium leguminosarum RepID=UPI0003618218
Uncharacterized protein {ECO:0000313|EMBL:EMS39732.1}; TaxID=908290 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium mesophilicum SR1.6/6.;"
transcriptional regulator
SCN18_10_11_15_R5_P_scaffold_13_5
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2725..3627
DNA (903bp) protein (301aa)
hypothetical protein n=1 Tax=Rhizobium leguminosarum RepID=UPI000362ED92
Probable antibiotic-resistance protein {ECO:0000313|EMBL:EDP66604.1}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
Putative antibiotic-resistance protein
SCN18_10_11_15_R5_P_scaffold_13_6
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3640..4608
DNA (969bp) protein (323aa)
hypothetical protein n=1 Tax=Rhizobium leguminosarum RepID=UPI0003773296
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Entotheonella_69_37_curated
SCN18_10_11_15_R5_P_scaffold_13_7
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4619..5476
DNA (858bp) protein (286aa)
hypothetical protein n=1 Tax=Rhizobium leguminosarum RepID=UPI000381EE89
Putative dipeptide ABC transporter, permease protein DppC {ECO:0000313|EMBL:EHM02423.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
peptide/nickel transport system permease protein
SCN18_10_11_15_R5_P_scaffold_13_8
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5473..6288
DNA (816bp) protein (272aa)
hypothetical protein n=1 Tax=Alicyclobacillus pohliae RepID=UPI0003716814
ABC transporter {ECO:0000313|EMBL:KFB11350.1}; TaxID=472175 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor basaltis.;"
peptide ABC transporter ATP-binding protein
SCN18_10_11_15_R5_P_scaffold_13_9
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6285..7283
DNA (999bp) protein (333aa)
Uncharacterized protein n=1 Tax=Actinomadura madurae LIID-AJ290 RepID=U2MWM1_9ACTO
Oligopeptide transport ATP-binding protein AppF {ECO:0000313|EMBL:EWM67634.1}; TaxID=457406 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora sp. M42.;"
peptide ABC transporter ATP-binding protein
SCN18_10_11_15_R5_P_scaffold_13_10
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7316..8941
DNA (1626bp) protein (542aa)
hypothetical protein n=1 Tax=Rhizobium leguminosarum RepID=UPI000361CA39
Dipeptide ABC transporter substrate binding protein {ECO:0000313|EMBL:EOA05795.1}; TaxID=864073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum frisingense GSF30.;"
extracellular solute-binding protein
SCN18_10_11_15_R5_P_scaffold_13_11
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9013..11127
DNA (2115bp) protein (705aa)
hypothetical protein n=1 Tax=Rhizobium leguminosarum RepID=UPI00036ED474
Putative pimeloyl-CoA synthetase {ECO:0000313|EMBL:EDP66605.1}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
Acyl-CoA synthetase (NDP forming)
SCN18_10_11_15_R5_P_scaffold_13_12
Magnetospirillum gryphiswaldense_SCNpilot_P_inoc_Magnetospirillum_64_120, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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11350..12750
DNA (1401bp) protein (467aa)
Uncharacterized protein n=1 Tax=Phaeospirillum molischianum DSM 120 RepID=H8FSP5_PHAMO
Uncharacterized protein {ECO:0000313|EMBL:KJV06636.1}; Flags: Fragment;; TaxID=552518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Elstera.;" source="Elstera litoralis.;"
hypothetical protein
SCN18_10_11_15_R5_P_scaffold_13_13
Magnetospirillum gryphiswaldense_SCNpilot_P_inoc_Magnetospirillum_64_120, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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12781..13374
DNA (594bp) protein (198aa)
Polysaccharide export protein n=1 Tax=Phaeospirillum molischianum DSM 120 RepID=H8FSP3_PHAMO
Polysaccharide export protein {ECO:0000313|EMBL:CCG41381.1}; TaxID=1150626 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Phaeospirillum.;" source="Phaeospirillum molischianum DSM 120.;"
Polysaccharide export protein
SCN18_10_11_15_R5_P_scaffold_13_14
SCNpilot_P_inoc_Kapabacteria_57_18, SCNpilot_P_inoc_Kapabacteria_57_18, SCNpilot_P_inoc_Kapabacteria_57_18, SCNpilot_P_inoc_Kapabacteria_57_18, SCNpilot_P_inoc_Kapabacteria_57_18, Kapabacteria

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13458..14861
DNA (1404bp) protein (468aa)
Sugar transferase involved in lipopolysaccharide synthesis n=1 Tax=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) RepID=Q2W7C5_MAGSA
lipopolysaccharide synthesis sugar transferase
Sugar transferase involved in lipopolysaccharide synthesis {ECO:0000313|EMBL:BAE50250.1}; TaxID=342108 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum magneticum (strain AMB-1 / ATCC 700264).;"
SCN18_10_11_15_R5_P_scaffold_13_15
Magnetospirillum gryphiswaldense_SCNpilot_P_inoc_Magnetospirillum_64_120, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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14920..17151
DNA (2232bp) protein (744aa)
Succinoglycan biosynthesis transport protein exoP n=1 Tax=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) RepID=Q2W7C1_MAGSA
succinoglycan biosynthesis transport protein exoP
Succinoglycan biosynthesis transport protein exoP {ECO:0000313|EMBL:BAE50254.1}; TaxID=342108 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum magneticum (strain AMB-1 / ATCC 700264).;"
SCN18_10_11_15_R5_P_scaffold_13_16
CN-SCN_Eukaryote_66x, CN-SCN_Eukaryote_66x, CN-SCN_Eukaryote_66x, CN-SCN_Eukaryote_66x, CN-SCN_Eukaryote_66x, Eukaryote

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17120..17830
DNA (711bp) protein (237aa)
SCN18_10_11_15_R5_P_scaffold_13_17
SCNPILOT_EXPT_750_BF_Nitrosomonadales_56_52, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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17827..19152
DNA (1326bp) protein (442aa)
Lipid A core-O-antigen ligase and related enzyme n=1 Tax=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) RepID=Q2W7C8_MAGSA
Lipid A core - O-antigen ligase and related enzyme
Lipid A core-O-antigen ligase and related enzyme {ECO:0000313|EMBL:BAE50247.1}; TaxID=342108 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum magneticum (strain AMB-1 / ATCC 700264).;"
SCN18_10_11_15_R5_P_scaffold_13_18
CN-SCN_Microbacterium_37x, Microbacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

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19222..20343
DNA (1122bp) protein (374aa)
Glycosyltransferase (EC:2.4.1.-)
Glycosyltransferase id=1295757 bin=GWE1_T_denit_62_9 species=Magnetospirillum magneticum genus=Magnetospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
SCN18_10_11_15_R5_P_scaffold_13_19
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(20352..21137)
DNA (786bp) protein (262aa)
metallophosphoesterase (EC:3.1.3.16)
Metallophosphoesterase n=1 Tax=Azospirillum amazonense Y2 RepID=G1Y1C1_9PROT
Metallophosphoesterase {ECO:0000313|EMBL:EGY00685.1}; TaxID=1003237 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Nitrospirillum.;" source="Nitrospirillum amazonense Y2.;"
SCN18_10_11_15_R5_P_scaffold_13_20
Magnetospirillum gryphiswaldense_SCNpilot_P_inoc_Magnetospirillum_64_120, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(21151..22227)
DNA (1077bp) protein (359aa)
Uncharacterized protein n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IVY7_RHOCS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACJ00461.1}; TaxID=414684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum centenum (strain ATCC 51521 / SW).;"
SCN18_10_11_15_R5_P_scaffold_13_21
Magnetospirillum gryphiswaldense_SCNpilot_P_inoc_Magnetospirillum_64_120, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22364..23704
DNA (1341bp) protein (447aa)
Lipid A core-O-antigen ligase and related enzyme n=1 Tax=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) RepID=Q2W7B8_MAGSA
Lipid A core - O-antigen ligase and related enzyme
Lipid A core-O-antigen ligase and related enzyme {ECO:0000313|EMBL:BAE50257.1}; TaxID=342108 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum magneticum (strain AMB-1 / ATCC 700264).;"
SCN18_10_11_15_R5_P_scaffold_13_22
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(23692..24441)
DNA (750bp) protein (250aa)
Teichoic acid biosynthesis protein n=1 Tax=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) RepID=Q2W7D2_MAGSA
teichoic acid biosynthesis protein
Teichoic acid biosynthesis protein {ECO:0000313|EMBL:BAE50243.1}; TaxID=342108 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum magneticum (strain AMB-1 / ATCC 700264).;"
SCN18_10_11_15_R5_P_scaffold_13_23
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24438..25598)
DNA (1161bp) protein (387aa)
Glycosyltransferase n=1 Tax=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) RepID=Q2W7D1_MAGSA
glycosyltransferase
Glycosyltransferase {ECO:0000313|EMBL:BAE50244.1}; TaxID=342108 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum magneticum (strain AMB-1 / ATCC 700264).;"
SCN18_10_11_15_R5_P_scaffold_13_24
unknown

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comp(25586..26788)
DNA (1203bp) protein (401aa)

This feature has no annotations

SCN18_10_11_15_R5_P_scaffold_13_25
SCN_Thiomonas_15x, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(26785..27504)
DNA (720bp) protein (240aa)
polysaccharide deacetylase n=1 Tax=Flavobacterium sp. ACAM 123 RepID=UPI0002FB891F
xylanase/chitin deacetylase-like protein
Tax=RIFCSPHIGHO2_01_FULL_WOR_2_52_10_curated
SCN18_10_11_15_R5_P_scaffold_13_26
SCNPILOT_EXPT_300_BF_Thiobacillus_62_448, SCNPILOT_EXPT_300_BF_Thiobacillus_62_448, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(27501..28742)
DNA (1242bp) protein (414aa)
Glycosyl transferase group 1 n=1 Tax=Desulfomicrobium baculatum (strain DSM 4028 / VKM B-1378) RepID=C7LVX5_DESBD
group 1 glycosyl transferase
Glycosyl transferase group 1 {ECO:0000313|EMBL:ACU89793.1}; TaxID=525897 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfomicrobiaceae; Desulfomicrobium.;" source="Desulfomicrobium baculatum (strain DSM 4028 / VKM B-1378); (Desulfovibrio baculatus).;"
SCN18_10_11_15_R5_P_scaffold_13_27
SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28739..29611)
DNA (873bp) protein (291aa)
hypothetical protein n=1 Tax=Actinoplanes globisporus RepID=UPI00037B2A45
Tax=RBG_16_Actinobacteria_68_12_curated
SCN18_10_11_15_R5_P_scaffold_13_28
SCNPILOT_CONT_1000_P_Verrucomicrobia_61_8, SCNPILOT_CONT_1000_P_Verrucomicrobia_61_8, SCNPILOT_CONT_1000_P_Verrucomicrobia_61_8, SCNPILOT_CONT_1000_P_Verrucomicrobia_61_8, SCNPILOT_CONT_1000_P_Verrucomicrobia_61_8, Verrucomicrobia

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comp(29608..30327)
DNA (720bp) protein (240aa)
Predicted xylanase/chitin deacetylase n=1 Tax=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) RepID=Q2W7D0_MAGSA
xylanase/chitin deacetylase
Predicted xylanase/chitin deacetylase {ECO:0000313|EMBL:BAE50245.1}; TaxID=342108 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum magneticum (strain AMB-1 / ATCC 700264).;"
SCN18_10_11_15_R5_P_scaffold_13_29
SCNPILOT_EXPT_750_BF_Sphingobacteriia_47_330, SCNPILOT_EXPT_750_BF_Sphingobacteriia_47_330, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(30320..31051)
DNA (732bp) protein (244aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. LNJC380A00 RepID=V7GDF5_9RHIZ
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_RIF_OP11_01_43_15b_curated
SCN18_10_11_15_R5_P_scaffold_13_30
unknown

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comp(31048..31869)
DNA (822bp) protein (274aa)

This feature has no annotations

Displaying items 1-30 of 516 in total

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