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SCN18_10_11_15_R4_P_scaffold_63

Search features with annotation key words

Displaying items 1-30 of 255 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_10_11_15_R4_P_scaffold_63_1
Aromatoleum aromaticum, Aromatoleum, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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1..120
DNA (120bp) protein (40aa)
Transposase n=1 Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5P005_AROAE
tnp44; transposase
Transposase {ECO:0000313|EMBL:CAI09359.1}; TaxID=76114 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Aromatoleum.;" source="Aromatoleum aromaticum (strain EbN1) (Azoarcus sp. (strain EbN1)).;"
SCN18_10_11_15_R4_P_scaffold_63_2
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(146..592)
DNA (447bp) protein (149aa)
Cyanate hydratase n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8J6G4_HYPSM
cynS; Cyanate lyase
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCN18_10_11_15_R4_P_scaffold_63_3
SCNPILOT_SOLID_1_TRIM150_Actinobacteria_71_9, SCNPILOT_SOLID_1_TRIM150_Actinobacteria_71_9, SCNPILOT_SOLID_1_TRIM150_Actinobacteria_71_9, Actinobacteria, Actinobacteria, Bacteria

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comp(589..858)
DNA (270bp) protein (90aa)
Transposase mutator type n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IQJ5_XANP2
Uncharacterized protein {ECO:0000313|EMBL:KFC70224.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
transposase mutator type
SCN18_10_11_15_R4_P_scaffold_63_4
unknown

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1139..1954
DNA (816bp) protein (272aa)

This feature has no annotations

SCN18_10_11_15_R4_P_scaffold_63_5
unknown

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1947..2630
DNA (684bp) protein (228aa)

This feature has no annotations

SCN18_10_11_15_R4_P_scaffold_63_6
unknown

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2648..3322
DNA (675bp) protein (225aa)

This feature has no annotations

SCN18_10_11_15_R4_P_scaffold_63_7
Magnetospirillum gryphiswaldense_SCNpilot_P_inoc_Magnetospirillum_64_120, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3628..4137
DNA (510bp) protein (170aa)
Uncharacterized protein n=2 Tax=Magnetospirillum gryphiswaldense RepID=V6F6U5_9PROT
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCN18_10_11_15_R4_P_scaffold_63_8
SCNPILOT_CONT_750_BF_Rhodospirillales_70_18, SCNPILOT_CONT_750_BF_Rhodospirillales_70_18, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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4275..5093
DNA (819bp) protein (273aa)
lgt; prolipoprotein diacylglyceryl transferase (EC:2.4.99.-)
Prolipoprotein diacylglyceryl transferase n=1 Tax=Phaeospirillum molischianum DSM 120 RepID=H8FTN8_PHAMO
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCN18_10_11_15_R4_P_scaffold_63_9
Magnetospirillum gryphiswaldense_SCNpilot_P_inoc_Magnetospirillum_64_120, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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5090..6151
DNA (1062bp) protein (354aa)
Uncharacterized protein n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AZS6_AZOBR
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCN18_10_11_15_R4_P_scaffold_63_10
Agrobacterium albertimagni_CN-SCN_Agrobacterium_19x, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6148..6912
DNA (765bp) protein (255aa)
Uncharacterized protein n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AZS7_AZOBR
polyphenol oxidase
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCN18_10_11_15_R4_P_scaffold_63_11
SCNPILOT_CONT_750_BF_Rhodospirillales_70_18, SCNPILOT_CONT_750_BF_Rhodospirillales_70_18, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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6967..7953
DNA (987bp) protein (329aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B5R5_9RHIZ
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCN18_10_11_15_R4_P_scaffold_63_12
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8067..9659
DNA (1593bp) protein (531aa)
Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein id=2476385 bin=GWA2_Methylomirabilis_73_35 species=alpha proteobacterium BAL199 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
oligopeptide ABC transporter, periplasmic oligopeptide-binding protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
SCN18_10_11_15_R4_P_scaffold_63_13
scnpilot_dereplicated_Mobile_Alphaproteobacteria_1, scnpilot_dereplicated_Mobile_Alphaproteobacteria_1, scnpilot_dereplicated_Mobile_Alphaproteobacteria_1, scnpilot_dereplicated_Mobile_Alphaproteobacteria_1, scnpilot_dereplicated_Mobile_Alphaproteobacteria_1, Mobile_element

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9762..11348
DNA (1587bp) protein (529aa)
Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein id=2476385 bin=GWA2_Methylomirabilis_73_35 species=alpha proteobacterium BAL199 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
extracellular solute-binding protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
SCN18_10_11_15_R4_P_scaffold_63_14
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11367..12308
DNA (942bp) protein (314aa)
Oligopeptide ABC transporter, permease protein id=2476252 bin=GWA2_Methylomirabilis_73_35 species=Ruegeria pomeroyi genus=Ruegeria taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
oligopeptide ABC transporter, permease protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCN18_10_11_15_R4_P_scaffold_63_15
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12305..13246
DNA (942bp) protein (314aa)
Oligopeptide ABC transporter, permease protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8TQG7_9PROT
oligopeptide ABC transporter, permease protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCN18_10_11_15_R4_P_scaffold_63_16
CN-SCN_Lautropia_15x, CN-SCN_Lautropia_15x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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13253..14881
DNA (1629bp) protein (543aa)
Oligopeptide ABC transporter ATP-binding protein n=1 Tax=Oceanibaculum indicum P24 RepID=K2JTA7_9PROT
ABC transporter family protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCN18_10_11_15_R4_P_scaffold_63_17
SCNPILOT_EXPT_750_BF_Nitrosomonadales_56_52, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15201..15416
DNA (216bp) protein (72aa)
hypothetical protein
Uncharacterized protein id=1805314 bin=GWE2_Bacteroidetes_32_14 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWE2_Bacteroidetes_32_14 organism_group=Bacteroidetes organism_desc=Good +
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCN18_10_11_15_R4_P_scaffold_63_18
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15421..16170)
DNA (750bp) protein (250aa)
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component n=1 Tax=Microvirga sp. WSM3557 RepID=I4YR21_9RHIZ
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component {ECO:0000313|EMBL:EIM26413.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
ABC transporter-like protein permease
SCN18_10_11_15_R4_P_scaffold_63_19
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(16170..16907)
DNA (738bp) protein (246aa)
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component n=1 Tax=Rhizobium sp. CF142 RepID=J2L8H6_9RHIZ
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component {ECO:0000313|EMBL:EJJ29827.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein
SCN18_10_11_15_R4_P_scaffold_63_20
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(17146..17907)
DNA (762bp) protein (254aa)
ABC transporter related protein n=2 Tax=Ketogulonicigenium vulgare RepID=E3EXG2_KETVY
ABC transporter related protein {ECO:0000313|EMBL:KFC61739.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
nitrate ABC transporter ATPase
SCN18_10_11_15_R4_P_scaffold_63_21
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17978..19366)
DNA (1389bp) protein (463aa)
S-adenosylhomocysteine deaminase, methylthioadenosine deaminase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBF5_PELHB
S-adenosylhomocysteine deaminase, methylthioadenosine deaminase
S-adenosylhomocysteine deaminase, methylthioadenosine deaminase {ECO:0000313|EMBL:AEQ52631.1}; TaxID=1082931 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Pelagibacterium.;" source="Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2).;"
SCN18_10_11_15_R4_P_scaffold_63_22
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19372..20388)
DNA (1017bp) protein (339aa)
ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component n=1 Tax=Microvirga sp. WSM3557 RepID=I4YR17_9RHIZ
ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component {ECO:0000313|EMBL:EIM26409.1}; Flags: Precursor;; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
twin-arginine translocation pathway signal
SCN18_10_11_15_R4_P_scaffold_63_23
CN-SCN_Phenylobacterium_14x, CN-SCN_Phenylobacterium_14x, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20507..20839)
DNA (333bp) protein (111aa)
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI00037AA3B5
SCN18_10_11_15_R4_P_scaffold_63_24
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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20906..22531
DNA (1626bp) protein (542aa)
Acyl-CoA dehydrogenase domain protein n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IJ75_METNO
acyl-CoA dehydrogenase domain-containing protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCN18_10_11_15_R4_P_scaffold_63_25
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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22696..23901
DNA (1206bp) protein (402aa)
Bll8153 protein n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89BJ5_BRADU
Uncharacterized protein {ECO:0000313|EMBL:KGT77881.1}; TaxID=375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum.;"
hypothetical protein
SCN18_10_11_15_R4_P_scaffold_63_26
CN-SCN_Phenylobacterium_31x, RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(23922..25064)
DNA (1143bp) protein (381aa)
Sulfonate transport system substrate-binding protein n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1H9F7_9BRAD
Bradyrhizobium elkanii strain UASWS1015 Contig185, whole genome shotgun sequence {ECO:0000313|EMBL:KIU44563.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
thiolase
SCN18_10_11_15_R4_P_scaffold_63_27
CN-SCN_Phenylobacterium_31x, RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25066..25440)
DNA (375bp) protein (125aa)
FdhD protein n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HNT8_9BRAD
FdhD protein {ECO:0000313|EMBL:ERF86478.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
hypothetical protein
SCN18_10_11_15_R4_P_scaffold_63_28
CN-SCN_Acidovorax_22x, CN-SCN_Acidovorax_22x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(25440..26579)
DNA (1140bp) protein (380aa)
Butyryl-CoA dehydrogenase n=1 Tax=Rhodovulum sp. PH10 RepID=J6LCS4_9RHOB
Butyryl-CoA dehydrogenase {ECO:0000313|EMBL:EJW11043.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
putative acyl-CoA dehydrogenase
SCN18_10_11_15_R4_P_scaffold_63_29
CN-SCN_Phenylobacterium_31x, RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26635..27252
DNA (618bp) protein (206aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1IUA6_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:ERF86479.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
TetR family transcriptional regulator
SCN18_10_11_15_R4_P_scaffold_63_30
CN-SCN_Phenylobacterium_31x, RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27266..28057
DNA (792bp) protein (264aa)
fabG6; 3-oxoacyl-ACP reductase (EC:1.1.1.100)
3-oxoacyl-[acyl-carrier protein] reductase n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HPW1_9BRAD
3-oxoacyl-[acyl-carrier protein] reductase {ECO:0000313|EMBL:ERF86481.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
Displaying items 1-30 of 255 in total

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