ggKbase home page

SCN18_30_10_14_R3_B_scaffold_1034

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R3_B_scaffold_1034_1
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..1081)
DNA (1080bp) protein (360aa)
cytochrome C oxidase subunit I n=1 Tax=Afipia birgiae RepID=UPI00031A8102
Cytochrome c oxidase subunit 1 {ECO:0000313|EMBL:EKS34288.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
coxA; cytochrome C oxidase subunit I
SCN18_30_10_14_R3_B_scaffold_1034_2
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1266..2105)
DNA (840bp) protein (280aa)
Cytochrome c oxidase subunit 2 {ECO:0000256|RuleBase:RU004024}; EC=1.9.3.1 {ECO:0000256|RuleBase:RU004024};; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
coxB; cytochrome C oxidase subunit II (EC:1.9.3.1)
Cytochrome c oxidase subunit 2 n=2 Tax=Bradyrhizobiaceae RepID=F7QHV1_9BRAD
SCN18_30_10_14_R3_B_scaffold_1034_3
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2492..3076
DNA (585bp) protein (195aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P3Q5_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS34290.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCN18_30_10_14_R3_B_scaffold_1034_4
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3181..4623
DNA (1443bp) protein (481aa)
peptidase C69 n=1 Tax=Afipia birgiae RepID=UPI000314A8D7
C69 family peptidase
Peptidase U62, modulator of DNA gyrase {ECO:0000313|EMBL:AEI07942.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCN18_30_10_14_R3_B_scaffold_1034_5
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4620..5390
DNA (771bp) protein (257aa)
Signal peptidase I {ECO:0000256|RuleBase:RU003993}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU003993};; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
lepB2; signal peptidase I (EC:3.4.21.89)
Signal peptidase I n=1 Tax=Afipia felis ATCC 53690 RepID=K8NUB4_AFIFE
SCN18_30_10_14_R3_B_scaffold_1034_6
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5448..6089)
DNA (642bp) protein (214aa)
Apple domain-containing protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V6Y8_9BRAD
PAN domain protein {ECO:0000313|EMBL:CEG09550.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
hypothetical protein
SCN18_30_10_14_R3_B_scaffold_1034_7
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6247..7617)
DNA (1371bp) protein (457aa)
Glutamate--cysteine ligase {ECO:0000313|EMBL:EGP09147.1}; EC=6.3.2.2 {ECO:0000313|EMBL:EGP09147.1};; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
gshA; gamma-glutamylcysteine synthetase (EC:6.3.2.2)
Glutamate--cysteine ligase n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QHU4_9BRAD
SCN18_30_10_14_R3_B_scaffold_1034_8
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7708..8283)
DNA (576bp) protein (192aa)
Regulatory protein MarR n=1 Tax=Rhodopseudomonas palustris (strain DX-1) RepID=E6VBP0_RHOPX
regulatory protein MarR
Regulatory protein MarR {ECO:0000313|EMBL:ADU42612.1}; TaxID=652103 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain DX-1).;"
SCN18_30_10_14_R3_B_scaffold_1034_9
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8345..8977
DNA (633bp) protein (211aa)
Glutathione S-transferase n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89V85_BRADU
attY; glutathione S-transferase
Glutathione S-transferase {ECO:0000313|EMBL:BAC46427.1}; TaxID=224911 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC; 14792 / USDA 110).;"
SCN18_30_10_14_R3_B_scaffold_1034_10
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9379..12597
DNA (3219bp) protein (1073aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI000371D13A
Uncharacterized protein {ECO:0000313|EMBL:EKS33350.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
Sel1-like protein
SCN18_30_10_14_R3_B_scaffold_1034_11
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12616..12885
DNA (270bp) protein (90aa)
SCN18_30_10_14_R3_B_scaffold_1034_12
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13353..14282
DNA (930bp) protein (310aa)
permease n=1 Tax=Afipia birgiae RepID=UPI0002D7ABD4
Uncharacterized protein {ECO:0000313|EMBL:EKS34304.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
permease
SCN18_30_10_14_R3_B_scaffold_1034_13
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14279..15067
DNA (789bp) protein (263aa)
membrane protein n=1 Tax=Afipia birgiae RepID=UPI0002D4D376
Uncharacterized protein {ECO:0000313|EMBL:EKS34305.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCN18_30_10_14_R3_B_scaffold_1034_14
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15206..15904)
DNA (699bp) protein (233aa)
Metallophosphoesterase n=3 Tax=Oligotropha carboxidovorans RepID=B6JC86_OLICO
metallophosphoesterase
Putative phosphoesterase {ECO:0000313|EMBL:AEI07492.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCN18_30_10_14_R3_B_scaffold_1034_15
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16194..18764)
DNA (2571bp) protein (857aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NRL9_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS28853.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
dead/deah box helicase
SCN18_30_10_14_R3_B_scaffold_1034_16
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18824..19753)
DNA (930bp) protein (310aa)
Tetratricopeptide TPR_2 n=2 Tax=Oligotropha carboxidovorans RepID=B6JDA6_OLICO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEI07948.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCN18_30_10_14_R3_B_scaffold_1034_17
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19773..20843
DNA (1071bp) protein (357aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NE23_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS28852.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
mRNA 3'-end processing factor
SCN18_30_10_14_R3_B_scaffold_1034_18
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20840..22711
DNA (1872bp) protein (624aa)
ATP-dependent DNA ligase (EC:6.5.1.1)
ATP-dependent DNA ligase n=1 Tax=Bradyrhizobium sp. WSM471 RepID=H5YCD7_9BRAD
ATP-dependent DNA ligase {ECO:0000313|EMBL:EHR00431.1}; TaxID=319017 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM471.;"
SCN18_30_10_14_R3_B_scaffold_1034_19
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23154..23459
DNA (306bp) protein (102aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V6Y2_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CEG09556.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
hypothetical protein
SCN18_30_10_14_R3_B_scaffold_1034_20
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23678..25021
DNA (1344bp) protein (448aa)
MATE efflux family protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V6Y1_9BRAD
MATE efflux family protein {ECO:0000313|EMBL:EFI50991.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
matE; multidrug resistance pump, MATE efflux family protein MatE
SCN18_30_10_14_R3_B_scaffold_1034_21
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24996..26090)
DNA (1095bp) protein (365aa)
Dihydroorotate dehydrogenase (quinone) {ECO:0000256|HAMAP-Rule:MF_00225, ECO:0000256|SAAS:SAAS00084821}; EC=1.3.5.2 {ECO:0000256|HAMAP-Rule:MF_00225, ECO:0000256|SAAS:SAAS00084821};; DHOdehase {ECO:0000256|HAMAP-Rule:MF_00225}; Dihydroorotate oxidase {ECO:0000256|HAMAP-Rule:MF_00225}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
dihydroorotate dehydrogenase 2 (EC:1.3.3.1)
diguanylate cyclase n=1 Tax=Afipia birgiae RepID=UPI0002F3674A
SCN18_30_10_14_R3_B_scaffold_1034_22
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26087..26431)
DNA (345bp) protein (115aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NUC0_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS29808.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
hypothetical protein
SCN18_30_10_14_R3_B_scaffold_1034_23
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26686..27183
DNA (498bp) protein (166aa)
Peptidase S24 n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WRC3_9BRAD
Peptidase S24 {ECO:0000313|EMBL:EAQ37462.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
peptidase S24
Displaying 23 items

View Taxonomy