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SCN18_30_10_14_R3_B_scaffold_1328

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R3_B_scaffold_1328_1
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..1043)
DNA (1041bp) protein (347aa)
DNA topoisomerase 4 subunit A {ECO:0000256|HAMAP-Rule:MF_00936}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_00936};; Topoisomerase IV subunit A {ECO:0000256|HAMAP-Rule:MF_00936}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
parC; DNA topoisomerase 4 subunit A (EC:5.99.1.-)
DNA topoisomerase 4 subunit A n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P6V5_9BRAD
SCN18_30_10_14_R3_B_scaffold_1328_2
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1265..1552
DNA (288bp) protein (96aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NP03_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS27953.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
hypothetical protein
SCN18_30_10_14_R3_B_scaffold_1328_3
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1634..2377)
DNA (744bp) protein (248aa)
DNA repair protein RecO n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PC74_9BRAD
DNA repair protein RecO {ECO:0000256|HAMAP-Rule:MF_00201, ECO:0000256|SAAS:SAAS00018750}; Recombination protein O {ECO:0000256|HAMAP-Rule:MF_00201}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
recO; DNA repair protein RecO
SCN18_30_10_14_R3_B_scaffold_1328_4
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2440..2907)
DNA (468bp) protein (156aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NG35_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS27951.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
hypothetical protein
SCN18_30_10_14_R3_B_scaffold_1328_5
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3475..3864)
DNA (390bp) protein (130aa)
Uncharacterized protein n=2 Tax=Oligotropha carboxidovorans RepID=B6JGG3_OLICO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEI06876.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCN18_30_10_14_R3_B_scaffold_1328_6
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3861..4784)
DNA (924bp) protein (308aa)
GTPase Era n=1 Tax=Afipia birgiae RepID=UPI000373FC9B
GTPase Era {ECO:0000256|HAMAP-Rule:MF_00367, ECO:0000256|SAAS:SAAS00085723}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
era; GTP-binding protein Era
SCN18_30_10_14_R3_B_scaffold_1328_7
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4777..5664)
DNA (888bp) protein (296aa)
Ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231299}; EC=3.1.26.3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231445};; Ribonuclease III {ECO:0000256|HAMAP-Rule:MF_00104}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
rnc; ribonuclease 3 (EC:3.1.26.3)
Ribonuclease 3 n=1 Tax=Afipia felis ATCC 53690 RepID=K8NNZ9_AFIFE
SCN18_30_10_14_R3_B_scaffold_1328_8
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5661..6419)
DNA (759bp) protein (253aa)
Signal peptidase I {ECO:0000256|RuleBase:RU362042}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU362042};; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
peptidase S26A, signal peptidase I (EC:3.4.21.89)
Signal peptidase I n=2 Tax=Bradyrhizobiaceae RepID=F7QP04_9BRAD
SCN18_30_10_14_R3_B_scaffold_1328_9
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6580..7011)
DNA (432bp) protein (144aa)
acpS; holo-[acyl-carrier-protein] synthase AcpS (EC:2.7.8.7)
Holo-[acyl-carrier-protein] synthase {ECO:0000255|HAMAP-Rule:MF_00101}; Short=Holo-ACP synthase {ECO:0000255|HAMAP-Rule:MF_00101};; EC=2.7.8.7 {ECO:0000255|HAMAP-Rule:MF_00101};; 4'-phosphopantetheinyl transferase AcpS {ECO:0000255|HAMAP-Rule:MF_00101}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
Holo-[acyl-carrier-protein] synthase n=2 Tax=Oligotropha carboxidovorans RepID=ACPS_OLICO
SCN18_30_10_14_R3_B_scaffold_1328_10
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7008..7787)
DNA (780bp) protein (260aa)
Pyridoxine 5'-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00279, ECO:0000256|SAAS:SAAS00088558}; Short=PNP synthase {ECO:0000256|HAMAP-Rule:MF_00279};; EC=2.6.99.2 {ECO:0000256|HAMAP-Rule:MF_00279, ECO:0000256|SAAS:SAAS00088588};; TaxID=375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum.;"
pyridoxine 5''''-phosphate synthase n=1 Tax=Bradyrhizobium japonicum RepID=UPI000361294E
pyridoxal phosphate biosynthetic protein
SCN18_30_10_14_R3_B_scaffold_1328_11
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7861..10170)
DNA (2310bp) protein (770aa)
GTP pyrophosphokinase (EC:2.7.6.5)
RelA/SpoT family protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P9Y2_9BRAD
RelA/SpoT family protein {ECO:0000313|EMBL:EKS38326.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCN18_30_10_14_R3_B_scaffold_1328_12
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10467..10859)
DNA (393bp) protein (131aa)
DNA-directed RNA polymerase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00054253}; Short=RNAP omega subunit {ECO:0000256|HAMAP-Rule:MF_00366};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00094401};; RNA polymerase omega subunit {ECO:0000256|HAMAP-Rule:MF_00366}; Transcriptase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366}; TaxID=319017 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM471.;"
DNA-directed RNA polymerase subunit omega n=2 Tax=Bradyrhizobium RepID=H5Y8M8_9BRAD
DNA-directed RNA polymerase subunit omega
SCN18_30_10_14_R3_B_scaffold_1328_13
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11278..11910
DNA (633bp) protein (211aa)
DUF88 n=2 Tax=Oligotropha carboxidovorans RepID=B6JGA9_OLICO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEI06884.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCN18_30_10_14_R3_B_scaffold_1328_14
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11888..12619
DNA (732bp) protein (244aa)
Uracil-DNA glycosylase, family 4 n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PGZ4_9BRAD
Uracil-DNA glycosylase, family 4 {ECO:0000313|EMBL:EKS38795.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
uracil-DNA glycosylase superfamily
SCN18_30_10_14_R3_B_scaffold_1328_15
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12803..13381)
DNA (579bp) protein (193aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PB81_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS38796.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
bcpB; BcpB protein
SCN18_30_10_14_R3_B_scaffold_1328_16
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13511..13984)
DNA (474bp) protein (158aa)
SsrA-binding protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V9Z8_9BRAD
SsrA-binding protein
SsrA-binding protein {ECO:0000256|HAMAP-Rule:MF_00023, ECO:0000256|SAAS:SAAS00023472}; TaxID=652103 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain DX-1).;"
SCN18_30_10_14_R3_B_scaffold_1328_17
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14012..14428)
DNA (417bp) protein (139aa)
Large-conductance mechanosensitive channel n=1 Tax=Afipia felis ATCC 53690 RepID=K8NNZ2_AFIFE
Large-conductance mechanosensitive channel {ECO:0000256|HAMAP-Rule:MF_00115, ECO:0000256|SAAS:SAAS00023935}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
mscL; large-conductance mechanosensitive channel MscL
SCN18_30_10_14_R3_B_scaffold_1328_18
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14454..15344)
DNA (891bp) protein (297aa)
dapA2; dihydrodipicolinate synthase DapA (EC:4.2.1.52)
4-hydroxy-tetrahydrodipicolinate synthase {ECO:0000255|HAMAP-Rule:MF_00418}; Short=HTPA synthase {ECO:0000255|HAMAP-Rule:MF_00418};; EC=4.3.3.7 {ECO:0000255|HAMAP-Rule:MF_00418};; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
4-hydroxy-tetrahydrodipicolinate synthase n=2 Tax=Oligotropha carboxidovorans RepID=DAPA_OLICO
SCN18_30_10_14_R3_B_scaffold_1328_19
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15652..17871
DNA (2220bp) protein (740aa)
Lytic transglycosylase catalytic n=1 Tax=Afipia sp. 1NLS2 RepID=D6VA01_9BRAD
Lytic transglycosylase catalytic {ECO:0000313|EMBL:EFI50295.1}; Flags: Precursor;; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
lytic transglycosylase
SCN18_30_10_14_R3_B_scaffold_1328_20
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18260..19219
DNA (960bp) protein (320aa)
Alpha/beta hydrolase fold-containing protein n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QP17_9BRAD
Alpha/beta hydrolase fold-containing protein {ECO:0000313|EMBL:EGP07100.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
putative hydrolase
SCN18_30_10_14_R3_B_scaffold_1328_21
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19473..20930)
DNA (1458bp) protein (486aa)
Porin n=2 Tax=Oligotropha carboxidovorans RepID=B6JGA1_OLICO
putative porin protein
Putative porin protein {ECO:0000313|EMBL:AEI06892.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
Displaying 21 items

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