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SCN18_30_10_14_R3_B_scaffold_1377

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R3_B_scaffold_1377_1
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(530..1642)
DNA (1113bp) protein (371aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NK36_AFIFE
S-(Hydroxymethyl)mycothiol dehydrogenase {ECO:0000313|EMBL:CEG07020.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
alcohol dehydrogenase, putative class 3
SCN18_30_10_14_R3_B_scaffold_1377_2
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1642..1953)
DNA (312bp) protein (104aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NHJ1_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS27924.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
hypothetical protein
SCN18_30_10_14_R3_B_scaffold_1377_3
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1995..2714)
DNA (720bp) protein (240aa)
ABC transporter ATP-binding protein, putative branched-chain amino acid transport n=2 Tax=Oligotropha carboxidovorans RepID=B6JE74_OLICO
Lipopolysaccharide export system ATP-binding protein LptB {ECO:0000313|EMBL:CEG07018.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
branched-chain amino acid ABC transporter ATP-binding protein
SCN18_30_10_14_R3_B_scaffold_1377_4
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2714..3520)
DNA (807bp) protein (269aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NBF4_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS27922.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
ABC transporter ATP-binding protein II
SCN18_30_10_14_R3_B_scaffold_1377_5
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3520..4533)
DNA (1014bp) protein (338aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NG04_AFIFE
Leucine/isoleucine/valine transporter permease subunit {ECO:0000313|EMBL:CEG07016.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
ABC transporter permease protein, putative branched-chain amino acid transport
SCN18_30_10_14_R3_B_scaffold_1377_6
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4530..5411)
DNA (882bp) protein (294aa)
ABC transporter permease protein, putative branched-chain amino acid transport system n=2 Tax=Oligotropha carboxidovorans RepID=B6JE77_OLICO
LIV-I protein H {ECO:0000313|EMBL:CEG07015.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
ABC transporter permease protein, putative branched-chain amino acid transport system
SCN18_30_10_14_R3_B_scaffold_1377_7
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5414..6688)
DNA (1275bp) protein (425aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NHI8_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS27919.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
ABC transporter substrate-binding protein, putative branched-chain amino acid transport system
SCN18_30_10_14_R3_B_scaffold_1377_8
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6942..7745
DNA (804bp) protein (268aa)
Fatty acid hydroxylase n=1 Tax=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) RepID=B6JE79_OLICO
fatty acid hydroxylase
Uncharacterized protein {ECO:0000313|EMBL:AEI05934.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCN18_30_10_14_R3_B_scaffold_1377_9
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7774..8175
DNA (402bp) protein (134aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NBF2_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS27917.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
hypothetical protein
SCN18_30_10_14_R3_B_scaffold_1377_10
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8200..8403
DNA (204bp) protein (68aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NG02_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:CEG07011.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
hypothetical protein
SCN18_30_10_14_R3_B_scaffold_1377_11
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8689..8880)
DNA (192bp) protein (64aa)
ybgC; 4-hydroxybenzoyl-CoA thioesterase (EC:3.1.2.-)
Tol-pal system-associated acyl-CoA thioesterase n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1IKA7_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:KJC33798.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
SCN18_30_10_14_R3_B_scaffold_1377_12
SCNPILOT_EXPT_1000_BF_Devosia_65_23, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8877..9176)
DNA (300bp) protein (100aa)
Putative transcriptional regulatory protein, Ars family n=1 Tax=Bradyrhizobium sp. (strain ORS278) RepID=A4YMV2_BRASO
Ars family transcriptional regulator
Putative transcriptional regulatory protein, Ars family {ECO:0000313|EMBL:CAL75228.1}; TaxID=114615 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain ORS278).;"
SCN18_30_10_14_R3_B_scaffold_1377_13
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9292..9510
DNA (219bp) protein (73aa)
Uncharacterized protein n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IGE8_XANP2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABS67091.1}; Flags: Precursor;; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
SCN18_30_10_14_R3_B_scaffold_1377_14
SCN_Thiomonas_15x, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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9538..10083
DNA (546bp) protein (182aa)
Blr3523 protein n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) PF8_BRADU">RepID=Q89PF8_BRADU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAR60767.1}; TaxID=1355477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens.;"
SCN18_30_10_14_R3_B_scaffold_1377_15
SCNPILOT_SOLID2_TRIM150_Burkholderiales_66_35, SCNPILOT_SOLID2_TRIM150_Burkholderiales_66_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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10101..10655
DNA (555bp) protein (185aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. STM 3809 RepID=H0SVH0_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CCD98197.1}; TaxID=551936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3809.;"
hypothetical protein
SCN18_30_10_14_R3_B_scaffold_1377_16
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10652..11701)
DNA (1050bp) protein (350aa)
Holliday junction ATP-dependent DNA helicase RuvB {ECO:0000256|HAMAP-Rule:MF_00016}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00016};; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
ruvB; holliday junction ATP-dependent DNA helicase RuvB (EC:3.6.1.-)
Holliday junction ATP-dependent DNA helicase RuvB n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QFJ3_9BRAD
SCN18_30_10_14_R3_B_scaffold_1377_17
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11698..12315)
DNA (618bp) protein (206aa)
Holliday junction ATP-dependent DNA helicase RuvA {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058935}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058896};; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
ruvA; Holliday junction DNA helicase RuvA (EC:3.6.1.-)
Holliday junction DNA helicase RuvA n=1 Tax=Afipia birgiae RepID=UPI0002E73983
SCN18_30_10_14_R3_B_scaffold_1377_18
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12312..12824)
DNA (513bp) protein (171aa)
Crossover junction endodeoxyribonuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106335}; EC=3.1.22.4 {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106388};; Holliday junction nuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; Holliday junction resolvase RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
ruvC; crossover junction endodeoxyribonuclease RuvC (EC:3.1.22.4)
Holliday junction resolvase n=1 Tax=Afipia birgiae RepID=UPI0002E30D54
SCN18_30_10_14_R3_B_scaffold_1377_19
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12863..14230)
DNA (1368bp) protein (456aa)
Magnesium transporter n=1 Tax=Afipia felis ATCC 53690 RepID=K8NGC3_AFIFE
Magnesium transporter MgtE {ECO:0000256|RuleBase:RU362011}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
mgtE; magnesium transporter MgtE
SCN18_30_10_14_R3_B_scaffold_1377_20
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14474..15220)
DNA (747bp) protein (249aa)
Probable transcriptional regulatory protein OCAR_7305/OCA5_c08120 n=2 Tax=Oligotropha carboxidovorans RepID=Y7305_OLICO
hypothetical protein
Probable transcriptional regulatory protein OCAR_7305/OCA5_c08120 {ECO:0000255|HAMAP-Rule:MF_00693}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCN18_30_10_14_R3_B_scaffold_1377_21
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15320..16147)
DNA (828bp) protein (276aa)
Metallophosphoesterase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V7A5_9BRAD
Metallophosphoesterase, MG_246/ family {ECO:0000313|EMBL:CEG09403.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
hypothetical protein
SCN18_30_10_14_R3_B_scaffold_1377_22
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16149..16820)
DNA (672bp) protein (224aa)
5-formyltetrahydrofolate cyclo-ligase {ECO:0000256|RuleBase:RU361279}; EC=6.3.3.2 {ECO:0000256|RuleBase:RU361279};; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
5-formyltetrahydrofolate cyclo-ligase n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P8N1_9BRAD
5-formyltetrahydrofolate cyclo-ligase
SCN18_30_10_14_R3_B_scaffold_1377_23
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17094..17477)
DNA (384bp) protein (128aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V7A3_9BRAD
Cell division protein ZapA {ECO:0000256|SAAS:SAAS00072473}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
hypothetical protein
SCN18_30_10_14_R3_B_scaffold_1377_24
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17474..17818)
DNA (345bp) protein (115aa)
Uncharacterized protein n=2 Tax=Bradyrhizobiaceae RepID=K8NYE6_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EGP10071.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
hypothetical protein
SCN18_30_10_14_R3_B_scaffold_1377_25
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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18088..20097
DNA (2010bp) protein (670aa)
Transketolase {ECO:0000256|RuleBase:RU004996}; EC=2.2.1.1 {ECO:0000256|RuleBase:RU004996};; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
tktA; transketolase TktA (EC:2.2.1.1)
transketolase n=1 Tax=Afipia birgiae RepID=UPI000307CE59
SCN18_30_10_14_R3_B_scaffold_1377_26
unknown

Not on your lists

20197..20271
DNA (75bp) protein (25aa)
gapA; glyceraldehyde-3-phosphate dehydrogenase (EC:1.2.1.12)
Displaying 26 items

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