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SCN18_30_10_14_R3_B_scaffold_1678

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R3_B_scaffold_1678_1
Mucilaginibacter paludis_SCNPILOT_CONT_1000_P_Mucilaginibacter_44_25, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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3..764
DNA (762bp) protein (254aa)
DNA-cytosine methyltransferase (EC:2.1.1.37)
DNA-cytosine methyltransferase n=1 Tax=Rhizobium leguminosarum RepID=UPI0003713BC4
DNA-cytosine methyltransferase {ECO:0000313|EMBL:KCZ98127.1}; TaxID=1280953 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas oceanitis SCH89.;"
SCN18_30_10_14_R3_B_scaffold_1678_2
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1520..2212)
DNA (693bp) protein (231aa)
Transcriptional regulator, GntR family n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A5U7_STAND
GntR family transcriptional regulator
Transcriptional regulator, GntR family {ECO:0000313|EMBL:ADH90062.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
SCN18_30_10_14_R3_B_scaffold_1678_3
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2365..2772
DNA (408bp) protein (136aa)
Cobalamin B12-binding domain protein n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A5U6_STAND
cobalamin B12-binding domain-containing protein
Cobalamin B12-binding domain protein {ECO:0000313|EMBL:ADH90061.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
SCN18_30_10_14_R3_B_scaffold_1678_4
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2787..4217
DNA (1431bp) protein (477aa)
phenylacetate--CoA ligase (EC:6.2.1.30)
Phenylacetate--CoA ligase {ECO:0000313|EMBL:ADH90060.1}; EC=6.2.1.30 {ECO:0000313|EMBL:ADH90060.1};; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
Phenylacetate--CoA ligase n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A5U5_STAND
SCN18_30_10_14_R3_B_scaffold_1678_5
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4214..5176
DNA (963bp) protein (321aa)
LAO/AO transport system ATPase n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A5U4_STAND
LAO/AO transporter ATPase
LAO/AO transport system ATPase {ECO:0000313|EMBL:ADH90059.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
SCN18_30_10_14_R3_B_scaffold_1678_6
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5186..6892
DNA (1707bp) protein (569aa)
methylmalonyl-CoA mutase large subunit (EC:5.4.99.2)
Methylmalonyl-CoA mutase, large subunit {ECO:0000313|EMBL:ADH90058.1}; EC=5.4.99.2 {ECO:0000313|EMBL:ADH90058.1};; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
Methylmalonyl-CoA mutase, large subunit n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A5U3_STAND
SCN18_30_10_14_R3_B_scaffold_1678_7
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7044..8216
DNA (1173bp) protein (391aa)
Carbonic anhydrase n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A5U2_STAND
carbonic anhydrase
Carbonic anhydrase {ECO:0000313|EMBL:ADH90057.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
SCN18_30_10_14_R3_B_scaffold_1678_8
SCNpilot_BF_INOC_Dechloromonas_67_13, SCNpilot_BF_INOC_Dechloromonas_67_13, SCNpilot_BF_INOC_Dechloromonas_67_13, Betaproteobacteria, Proteobacteria, Bacteria

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8217..8822
DNA (606bp) protein (202aa)
ATP/cobalamin adenosyltransferase n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A5U1_STAND
ATP/cobalamin adenosyltransferase
ATP/cobalamin adenosyltransferase {ECO:0000313|EMBL:ADH90056.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
SCN18_30_10_14_R3_B_scaffold_1678_9
SCNPILOT_CONT_300_BF_Rhizobiales_67_6_partial, SCNPILOT_CONT_300_BF_Rhizobiales_67_6_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8825..9535
DNA (711bp) protein (237aa)
3-hydroxybutyryl-CoA dehydrogenase {ECO:0000313|EMBL:ACB79862.1}; EC=1.1.1.157 {ECO:0000313|EMBL:ACB79862.1};; TaxID=441620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001).;"
3-hydroxybutyryl-CoA dehydrogenase n=1 Tax=Kaistia granuli RepID=UPI0003815F3F
3-hydroxybutyryl-CoA dehydrogenase
SCN18_30_10_14_R3_B_scaffold_1678_10
CN-SCN_Mesorhizobium_20x, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9475..9621
DNA (147bp) protein (49aa)
3-hydroxybutyryl-CoA dehydrogenase n=1 Tax=Methylocystis rosea RepID=UPI0003732BF3
3-hydroxyacyl-CoA dehydrogenase
3-hydroxyacyl-CoA dehydrogenase, NAD-binding {ECO:0000313|EMBL:CCJ07547.1}; TaxID=187303 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis sp. (strain SC2).;"
SCN18_30_10_14_R3_B_scaffold_1678_11
SCNPILOT_CONT_1000_P_Pseudonocardia_72_23, SCNPILOT_CONT_1000_P_Pseudonocardia_72_23, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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9927..11666
DNA (1740bp) protein (580aa)
Acetolactate synthase n=1 Tax=Bradyrhizobium oligotrophicum S58 RepID=M4ZDG6_9BRAD
acetolactate synthase
Acetolactate synthase {ECO:0000313|EMBL:BAM91804.1}; TaxID=1245469 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium oligotrophicum S58.;"
SCN18_30_10_14_R3_B_scaffold_1678_12
SCNPILOT_SOLID2_TRIM150_Rhizobiales_63_17, SCNPILOT_SOLID2_TRIM150_Rhizobiales_63_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12026..13291)
DNA (1266bp) protein (422aa)
Uncharacterized protein n=1 Tax=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) RepID=B6JJ50_OLICO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEI05500.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCN18_30_10_14_R3_B_scaffold_1678_13
SCNPILOT_SOLID2_TRIM150_Rhizobiales_63_17, SCNPILOT_SOLID2_TRIM150_Rhizobiales_63_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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13533..14480
DNA (948bp) protein (316aa)
Immunogenic protein n=2 Tax=Oligotropha carboxidovorans RepID=B6JJ49_OLICO
immunogenic protein
TRAP transport system, substrate-binding protein {ECO:0000313|EMBL:AEI05501.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCN18_30_10_14_R3_B_scaffold_1678_14
SCNPILOT_SOLID2_TRIM150_Rhizobiales_63_17, SCNPILOT_SOLID2_TRIM150_Rhizobiales_63_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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14628..16742
DNA (2115bp) protein (705aa)
TRAP transport system, permease protein n=2 Tax=Oligotropha carboxidovorans RepID=B6JJ48_OLICO
trap transporter 4tm/12tm fusion protein
TRAP transport system, permease protein {ECO:0000313|EMBL:AEI05502.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCN18_30_10_14_R3_B_scaffold_1678_15
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16763..17491
DNA (729bp) protein (243aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P3G9_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS34220.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCN18_30_10_14_R3_B_scaffold_1678_16
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17691..19601
DNA (1911bp) protein (637aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8P4R4_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS33418.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
AMP-dependent synthetase and ligase
SCN18_30_10_14_R3_B_scaffold_1678_17
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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19617..19823
DNA (207bp) protein (69aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P750_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS34218.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCN18_30_10_14_R3_B_scaffold_1678_18
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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19833..20111
DNA (279bp) protein (93aa)
Putative uncharacterized protein n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QI09_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EGP09212.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
hypothetical protein
SCN18_30_10_14_R3_B_scaffold_1678_19
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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20265..20942
DNA (678bp) protein (226aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NKC8_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS29566.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
DsbA family protein
SCN18_30_10_14_R3_B_scaffold_1678_20
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21016..21723)
DNA (708bp) protein (236aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V779_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EFI51089.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
hypothetical protein
SCN18_30_10_14_R3_B_scaffold_1678_21
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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21830..22921
DNA (1092bp) protein (364aa)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570}; EC=1.17.1.2 {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570};; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
ispH; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC:1.17.1.2)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8P167_9BRAD
SCN18_30_10_14_R3_B_scaffold_1678_22
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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22928..23908
DNA (981bp) protein (327aa)
Homoserine kinase {ECO:0000256|HAMAP-Rule:MF_00301, ECO:0000256|SAAS:SAAS00085804}; Short=HK {ECO:0000256|HAMAP-Rule:MF_00301};; Short=HSK {ECO:0000256|HAMAP-Rule:MF_00301};; EC=2.7.1.39 {ECO:0000256|HAMAP-Rule:MF_00301, ECO:0000256|SAAS:SAAS00085809};; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
thrB; homoserine kinase (EC:2.7.1.39)
Homoserine kinase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V781_9BRAD
SCN18_30_10_14_R3_B_scaffold_1678_23
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23905..24360
DNA (456bp) protein (152aa)
Ribonuclease H {ECO:0000256|HAMAP-Rule:MF_00042, ECO:0000256|SAAS:SAAS00016437}; Short=RNase H {ECO:0000256|HAMAP-Rule:MF_00042};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00042, ECO:0000256|SAAS:SAAS00016437};; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
rnhA; ribonuclease HI (EC:3.1.26.4)
Ribonuclease H n=1 Tax=Afipia sp. 1NLS2 RepID=D6V782_9BRAD
SCN18_30_10_14_R3_B_scaffold_1678_24
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(24434..24919)
DNA (486bp) protein (162aa)
Hybrid peroxiredoxin hyPrx5 n=2 Tax=Oligotropha carboxidovorans RepID=B6JJ38_OLICO
peroxiredoxin
Peroxiredoxin {ECO:0000313|EMBL:AEI05512.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCN18_30_10_14_R3_B_scaffold_1678_25
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25032..25691)
DNA (660bp) protein (220aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V784_9BRAD
Cytochrome C biogenesis protein {ECO:0000313|EMBL:KJC39352.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
hypothetical protein
Displaying 25 items

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