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SCN18_30_10_14_R3_B_scaffold_2021

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R3_B_scaffold_2021_1
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..644)
DNA (642bp) protein (214aa)
Uncharacterized protein n=2 Tax=Bradyrhizobiaceae RepID=K8NUN6_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS32851.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
hypothetical protein
SCN18_30_10_14_R3_B_scaffold_2021_2
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(857..2017)
DNA (1161bp) protein (387aa)
protease htpX (EC:3.4.24.-)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NS21_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS29023.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
SCN18_30_10_14_R3_B_scaffold_2021_3
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2068..2628)
DNA (561bp) protein (187aa)
LemA n=2 Tax=Oligotropha carboxidovorans RepID=B6JF23_OLICO
LemA
LemA family protein {ECO:0000313|EMBL:AEI05821.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCN18_30_10_14_R3_B_scaffold_2021_4
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2815..3207)
DNA (393bp) protein (131aa)
Uncharacterized protein n=2 Tax=Bradyrhizobiaceae RepID=K8NWJ1_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS32854.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
hypothetical protein
SCN18_30_10_14_R3_B_scaffold_2021_5
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3287..4270)
DNA (984bp) protein (328aa)
ribosomal methyltransferase Rsm22 n=1 Tax=Afipia birgiae RepID=UPI000317DDFC
Uncharacterized protein {ECO:0000313|EMBL:EKS41204.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
putative methylase
SCN18_30_10_14_R3_B_scaffold_2021_6
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4347..7811)
DNA (3465bp) protein (1155aa)
Chromosome partition protein Smc n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PNX2_9BRAD
Chromosome partition protein Smc {ECO:0000256|HAMAP-Rule:MF_01894}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
smc; chromosome segregation protein SMC
SCN18_30_10_14_R3_B_scaffold_2021_7
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8174..8830)
DNA (657bp) protein (219aa)
Protein-disulfide isomerase n=2 Tax=Oligotropha carboxidovorans RepID=B6JF19_OLICO
putative oxidoreductase
Putative oxidoreductase {ECO:0000313|EMBL:AEI05825.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCN18_30_10_14_R3_B_scaffold_2021_8
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8951..9430)
DNA (480bp) protein (160aa)
Uncharacterized protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WT65_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:KJC58556.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
hypothetical protein
SCN18_30_10_14_R3_B_scaffold_2021_9
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9512..10627
DNA (1116bp) protein (372aa)
A/G-specific adenine glycosylase n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PS88_9BRAD
A/G-specific adenine glycosylase {ECO:0000313|EMBL:EKS41208.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
mutY; A/G-specific adenine DNA glycosylase MutY
SCN18_30_10_14_R3_B_scaffold_2021_10
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10630..11250
DNA (621bp) protein (207aa)
glutathione S-transferase (EC:2.5.1.18)
Glutathione S-transferase Gst {ECO:0000313|EMBL:AEI05828.1}; EC=2.5.1.18 {ECO:0000313|EMBL:AEI05828.1};; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
Glutathione S-transferase n=2 Tax=Oligotropha carboxidovorans RepID=B6JF16_OLICO
SCN18_30_10_14_R3_B_scaffold_2021_11
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11428..11898
DNA (471bp) protein (157aa)
Uncharacterized protein n=2 Tax=Oligotropha carboxidovorans RepID=F8BQ20_OLICM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEI05829.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCN18_30_10_14_R3_B_scaffold_2021_12
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11975..13105)
DNA (1131bp) protein (377aa)
Methyltransferase {ECO:0000256|RuleBase:RU362026}; EC=2.1.1.- {ECO:0000256|RuleBase:RU362026};; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
smeIM; modification methylase (EC:2.1.1.72)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NKN7_AFIFE
SCN18_30_10_14_R3_B_scaffold_2021_13
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13527..14456
DNA (930bp) protein (310aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V937_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EFI50675.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
zinc-dependent peptidase
SCN18_30_10_14_R3_B_scaffold_2021_14
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14572..15129
DNA (558bp) protein (186aa)
molybdopterin biosynthesis protein B n=1 Tax=Afipia birgiae RepID=UPI0003748FE5
Molybdenum cofactor biosynthesis protein B {ECO:0000256|PIRNR:PIRNR006443}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
moaB; molybdenum cofactor biosynthesis protein B
SCN18_30_10_14_R3_B_scaffold_2021_15
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15290..15862)
DNA (573bp) protein (191aa)
Glycosyl transferase n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QJL0_9BRAD
Glycosyl transferase {ECO:0000313|EMBL:EGP08735.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
hypothetical protein
SCN18_30_10_14_R3_B_scaffold_2021_16
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16018..16332)
DNA (315bp) protein (105aa)
Uncharacterized protein n=2 Tax=Oligotropha carboxidovorans RepID=B6JF12_OLICO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEI05833.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCN18_30_10_14_R3_B_scaffold_2021_17
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16481..17602
DNA (1122bp) protein (374aa)
moaA/nifB/pqqE family protein n=1 Tax=Afipia birgiae RepID=UPI0002D5612E
Uncharacterized protein {ECO:0000313|EMBL:EKS32868.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
radical SAM
SCN18_30_10_14_R3_B_scaffold_2021_18
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17696..18481
DNA (786bp) protein (262aa)
Ribonuclease HII {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016879}; Short=RNase HII {ECO:0000256|HAMAP-Rule:MF_00052};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016872};; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
rnhB; ribonuclease HII (EC:3.1.26.4)
Ribonuclease HII n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PSA7_9BRAD
SCN18_30_10_14_R3_B_scaffold_2021_19
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18572..20098
DNA (1527bp) protein (509aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI0002EDE22A
Uncharacterized protein {ECO:0000313|EMBL:EKS32870.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
hypothetical protein
SCN18_30_10_14_R3_B_scaffold_2021_20
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20126..20908)
DNA (783bp) protein (261aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NN82_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS29000.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
short-chain dehydrogenase/reductase family
SCN18_30_10_14_R3_B_scaffold_2021_21
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20981..22186)
DNA (1206bp) protein (402aa)
Major facilitator superfamily MFS_1 n=1 Tax=Afipia sp. 1NLS2 RepID=D6V949_9BRAD
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:EFI50687.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
MFS permease
SCN18_30_10_14_R3_B_scaffold_2021_22
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22340..23152)
DNA (813bp) protein (271aa)
Uracil-DNA glycosylase, family 4 n=1 Tax=Afipia felis ATCC 53690 RepID=K8NRZ7_AFIFE
Uracil-DNA glycosylase, family 4 {ECO:0000313|EMBL:EKS28998.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
uracil-DNA glycosylase, family 4
SCN18_30_10_14_R3_B_scaffold_2021_23
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23401..23700
DNA (300bp) protein (100aa)
Putative electron transfer flavoprotein dehydrogenases {ECO:0000313|EMBL:CCE03694.1}; EC=1.5.5.1 {ECO:0000313|EMBL:CCE03694.1};; TaxID=551936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3809.;"
FAD dependent oxidoreductase n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WT76_9BRAD
putative electron transfer flavoprotein dehydrogenase
Displaying 23 items

View Taxonomy