ggKbase home page

SCN18_14_9_16_R2_B_scaffold_655

Search features with annotation key words

Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_14_9_16_R2_B_scaffold_655_1
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..404)
DNA (402bp) protein (134aa)
NADH-quinone oxidoreductase subunit D {ECO:0000255|HAMAP-Rule:MF_01358}; EC=1.6.5.11 {ECO:0000255|HAMAP-Rule:MF_01358};; NADH dehydrogenase I subunit D {ECO:0000255|HAMAP-Rule:MF_01358}; NDH-1 subunit D {ECO:0000255|HAMAP-Rule:MF_01358}; TaxID=439375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168).;"
NADH-quinone oxidoreductase subunit D n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=NUOD_OCHA4
NADH dehydrogenase subunit D
SCN18_14_9_16_R2_B_scaffold_655_2
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(424..1032)
DNA (609bp) protein (203aa)
NADH-quinone oxidoreductase subunit C {ECO:0000256|HAMAP-Rule:MF_01357}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01357};; NADH dehydrogenase I subunit C {ECO:0000256|HAMAP-Rule:MF_01357}; NDH-1 subunit C {ECO:0000256|HAMAP-Rule:MF_01357}; TaxID=360313 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. CDB2.;"
NADH-quinone oxidoreductase subunit C n=1 Tax=Ochrobactrum sp. CDB2 RepID=M3JR52_9RHIZ
NADH dehydrogenase subunit C
SCN18_14_9_16_R2_B_scaffold_655_3
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1054..1635)
DNA (582bp) protein (194aa)
NADH-ubiquinone oxidoreductase chain B (EC:1.6.5.3)
NADH-quinone oxidoreductase subunit B {ECO:0000255|HAMAP-Rule:MF_01356}; EC=1.6.5.11 {ECO:0000255|HAMAP-Rule:MF_01356};; NADH dehydrogenase I subunit B {ECO:0000255|HAMAP-Rule:MF_01356}; NDH-1 subunit B {ECO:0000255|HAMAP-Rule:MF_01356}; TaxID=204722 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Brucella.;" source="Brucella suis biovar 1 (strain 1330).;"
NADH-quinone oxidoreductase subunit B n=143 Tax=Brucella RepID=NUOB_BRUC2
SCN18_14_9_16_R2_B_scaffold_655_4
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1626..1991)
DNA (366bp) protein (122aa)
NADH-quinone oxidoreductase subunit A {ECO:0000256|HAMAP-Rule:MF_01394}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01394};; NADH dehydrogenase I subunit A {ECO:0000256|HAMAP-Rule:MF_01394}; NDH-1 subunit A {ECO:0000256|HAMAP-Rule:MF_01394}; NUO1 {ECO:0000256|HAMAP-Rule:MF_01394}; TaxID=641140 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Brucella.;" source="Brucella abortus str. 2308 A.;"
NADH-quinone oxidoreductase subunit A n=212 Tax=Brucella RepID=A5VPY3_BRUO2
NADH dehydrogenase subunit A
SCN18_14_9_16_R2_B_scaffold_655_5
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2531..2626
DNA (96bp) protein (32aa)
SCN18_14_9_16_R2_B_scaffold_655_trna_3
unknown

Not on your lists

comp(2938..3011)
DNA (74bp)
transferRNA Asp
SCN18_14_9_16_R2_B_scaffold_655_6
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3420..3737
DNA (318bp) protein (106aa)
SCN18_14_9_16_R2_B_scaffold_655_7
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4251..5273
DNA (1023bp) protein (341aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002DAD855
ABC transporter substrate-binding protein {ECO:0000313|EMBL:EMS95106.1}; TaxID=1281779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens str. Cherry 2E-2-2.;"
iron ABC transporter substrate binding protein
SCN18_14_9_16_R2_B_scaffold_655_8
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5270..6310
DNA (1041bp) protein (347aa)
ABC transporter permease n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00031CD324
Cobalamin import system permease protein BtuC {ECO:0000313|EMBL:EYR77516.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
iron ABC transporter permease
SCN18_14_9_16_R2_B_scaffold_655_9
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6307..7101
DNA (795bp) protein (265aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0003063212
iron ABC transporter
Iron ABC transporter {ECO:0000313|EMBL:ACM29995.1}; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
SCN18_14_9_16_R2_B_scaffold_655_10
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7105..7554
DNA (450bp) protein (150aa)
Putative pseudoazurin n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9AJE6_RHIFH
putative pseudoazurin precursor
Putative pseudoazurin {ECO:0000313|EMBL:CCF01178.1}; TaxID=1117943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium fredii (strain HH103) (Sinorhizobium fredii).;"
SCN18_14_9_16_R2_B_scaffold_655_11
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7707..8075
DNA (369bp) protein (123aa)
hypothetical protein n=1 Tax=Ochrobactrum anthropi RepID=UPI00028969CA
Uncharacterized protein {ECO:0000313|EMBL:EXL05163.1}; TaxID=529 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi.;"
hypothetical protein
SCN18_14_9_16_R2_B_scaffold_655_12
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8300..9349
DNA (1050bp) protein (350aa)
alkanal monooxygenase (EC:1.14.14.3)
luciferase n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI000310BEDD
Luciferase {ECO:0000313|EMBL:EZQ12791.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
SCN18_14_9_16_R2_B_scaffold_655_13
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9584..10867
DNA (1284bp) protein (428aa)
UPI0003CFDB56 related cluster n=1 Tax=unknown RepID=UPI0003CFDB56
Membrane protein {ECO:0000313|EMBL:ESZ36653.1}; TaxID=1287105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C066B000.;"
hypothetical protein
SCN18_14_9_16_R2_B_scaffold_655_trna_2
unknown

Not on your lists

comp(10827..10899)
DNA (73bp)
transferRNA Val
SCN18_14_9_16_R2_B_scaffold_655_14
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11183..11572
DNA (390bp) protein (130aa)
Uncharacterized protein n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=A6X1U7_OCHA4
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABS15201.1}; Flags: Precursor;; TaxID=439375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168).;"
SCN18_14_9_16_R2_B_scaffold_655_15
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12340..13623)
DNA (1284bp) protein (428aa)
O-acetylhomoserine/O-acetylserine sulfhydrylase {ECO:0000313|EMBL:ABS15205.1}; EC=2.5.1.49 {ECO:0000313|EMBL:ABS15205.1};; TaxID=439375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168).;"
O-acetylhomoserine/O-acetylserine sulfhydrylase n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=A6X1V1_OCHA4
O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase family protein
SCN18_14_9_16_R2_B_scaffold_655_16
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13810..14232)
DNA (423bp) protein (141aa)
CoA-binding domain-containing protein n=1 Tax=Ochrobactrum intermedium M86 RepID=M5JKX7_9RHIZ
CoA-binding domain-containing protein {ECO:0000313|EMBL:ELT47157.1}; TaxID=1234597 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum intermedium M86.;"
CoA-binding domain-containing protein
SCN18_14_9_16_R2_B_scaffold_655_17
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


14551..15015
DNA (465bp) protein (155aa)
50S ribosomal protein L13 n=1 Tax=Ochrobactrum sp. CDB2 RepID=M3KIV6_9RHIZ
50S ribosomal protein L13 {ECO:0000256|HAMAP-Rule:MF_01366, ECO:0000256|SAAS:SAAS00083943}; TaxID=360313 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. CDB2.;"
rplM; LSU ribosomal protein L13p (L13Ae)
SCN18_14_9_16_R2_B_scaffold_655_18
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


15012..15497
DNA (486bp) protein (162aa)
30S ribosomal protein S9 n=5 Tax=Ochrobactrum RepID=RS9_OCHA4
rpsI; 30S ribosomal protein S9
30S ribosomal protein S9 {ECO:0000256|HAMAP-Rule:MF_00532, ECO:0000256|RuleBase:RU003816}; TaxID=1390361 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. EGD-AQ16.;"
SCN18_14_9_16_R2_B_scaffold_655_19
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15578..16846)
DNA (1269bp) protein (423aa)
Acyltransferase 3 n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6Y8T0_9RHIZ
Acyltransferase 3 {ECO:0000313|EMBL:EHH11802.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
acyltransferase 3
SCN18_14_9_16_R2_B_scaffold_655_20
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17000..17356
DNA (357bp) protein (119aa)
Putative uncharacterized protein n=1 Tax=Ochrobactrum intermedium LMG 3301 RepID=C4WFT0_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EEQ95458.1}; TaxID=641118 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum intermedium LMG 3301.;"
hypothetical protein
SCN18_14_9_16_R2_B_scaffold_655_21
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17499..18434
DNA (936bp) protein (312aa)
N-acetyl-gamma-glutamyl-phosphate reductase {ECO:0000256|HAMAP-Rule:MF_01110, ECO:0000256|SAAS:SAAS00015955}; Short=AGPR {ECO:0000256|HAMAP-Rule:MF_01110};; EC=1.2.1.38 {ECO:0000256|HAMAP-Rule:MF_01110, ECO:0000256|SAAS:SAAS00015955};; N-acetyl-glutamate semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01110}; TaxID=520449 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Brucella.;" source="Brucella sp. 83/13.;"
N-acetyl-gamma-glutamyl-phosphate reductase n=2 Tax=Brucella RepID=D1CXD8_9RHIZ
N-acetyl-gamma-glutamyl-phosphate reductase
SCN18_14_9_16_R2_B_scaffold_655_22
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18431..19264
DNA (834bp) protein (278aa)
3''-kinase n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=A6X1W0_OCHA4
3'-kinase {ECO:0000313|EMBL:EXL02914.1}; TaxID=529 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi.;"
3''-kinase
SCN18_14_9_16_R2_B_scaffold_655_23
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19255..20322)
DNA (1068bp) protein (356aa)
Heme A synthase {ECO:0000256|HAMAP-Rule:MF_01665}; Short=HAS {ECO:0000256|HAMAP-Rule:MF_01665};; EC=1.3.-.- {ECO:0000256|HAMAP-Rule:MF_01665};; Cytochrome aa3-controlling protein {ECO:0000256|HAMAP-Rule:MF_01665}; TaxID=1390361 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. EGD-AQ16.;"
Heme A synthase n=1 Tax=Ochrobactrum sp. EGD-AQ16 RepID=U1WVB4_9RHIZ
cytochrome oxidase assembly family protein
SCN18_14_9_16_R2_B_scaffold_655_24
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20479..20697
DNA (219bp) protein (73aa)
Uncharacterized protein n=4 Tax=Brucella RepID=E0DK55_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EFM57632.1}; TaxID=470735 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Brucella.;" source="Brucella inopinata BO1.;"
hypothetical protein
SCN18_14_9_16_R2_B_scaffold_655_25
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20722..21486)
DNA (765bp) protein (255aa)
Exopolysaccharide transport protein family n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=A6X1W4_OCHA4
exopolysaccharide transport family protein
Exopolysaccharide transport protein family {ECO:0000313|EMBL:ABS15218.1}; TaxID=439375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168).;"
SCN18_14_9_16_R2_B_scaffold_655_26
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21760..22347
DNA (588bp) protein (196aa)
Polysaccharide export protein n=1 Tax=Ochrobactrum intermedium M86 RepID=M5JKQ1_9RHIZ
Polysaccharide export protein {ECO:0000313|EMBL:ELT47145.1}; TaxID=1234597 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum intermedium M86.;"
polysaccharide export protein
SCN18_14_9_16_R2_B_scaffold_655_27
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22616..24172
DNA (1557bp) protein (519aa)
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase n=1 Tax=Ochrobactrum intermedium LMG 3301 RepID=C4WFS0_9RHIZ
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase {ECO:0000313|EMBL:EEQ95448.1}; TaxID=641118 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum intermedium LMG 3301.;"
undecaprenyl-phosphate galactose phosphotransferase
SCN18_14_9_16_R2_B_scaffold_655_trna_1
unknown

Not on your lists

comp(24262..24335)
DNA (74bp)
transferRNA Pro
Displaying items 1-30 of 35 in total

View Taxonomy