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SCN18_26_2_15_R1_B_scaffold_1536

Search features with annotation key words

Displaying items 1-30 of 48 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_26_2_15_R1_B_scaffold_1536_1
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..963)
DNA (963bp) protein (321aa)
UDP-glucose 4-epimerase n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K1A1_AGRVS
dehydratase
Dehydratase {ECO:0000313|EMBL:AJY45284.1}; TaxID=1486262 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Martelella.;" source="Martelella endophytica.;"
SCN18_26_2_15_R1_B_scaffold_1536_2
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1081..2166)
DNA (1086bp) protein (362aa)
UPI0003CF48D8 related cluster n=1 Tax=unknown RepID=UPI0003CF48D8
ABC transporter ATP-binding protein {ECO:0000313|EMBL:ESY21545.1}; TaxID=1287275 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNJC395A00.;"
ABC transporter
SCN18_26_2_15_R1_B_scaffold_1536_3
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2170..3279)
DNA (1110bp) protein (370aa)
Sugar ABC transporter ATP-binding protein n=2 Tax=Rhizobium etli RepID=S5SWE7_RHIET
sugar ABC transporter ATP-binding protein
Sugar ABC transporter ATP-binding protein {ECO:0000313|EMBL:AGS26197.1}; TaxID=1328306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. Mim1.;"
SCN18_26_2_15_R1_B_scaffold_1536_4
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3276..3485)
DNA (210bp) protein (70aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HJB4_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHK59160.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
hypothetical protein
SCN18_26_2_15_R1_B_scaffold_1536_5
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3482..4441)
DNA (960bp) protein (320aa)
ABC-type sugar transport system, permease component n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KIE7_MESAW
ABC-type sugar transport system, permease component
Sugar ABC transporter permease {ECO:0000313|EMBL:ESY96526.1}; TaxID=1287240 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC229A00.;"
SCN18_26_2_15_R1_B_scaffold_1536_6
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4443..5333)
DNA (891bp) protein (297aa)
ABC transporter permease n=2 Tax=Rhizobium leguminosarum RepID=UPI00036C2EEF
binding-protein-dependent transport systems inner membrane component
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ACS59202.1}; TaxID=395491 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM1325).;"
SCN18_26_2_15_R1_B_scaffold_1536_7
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5422..6117)
DNA (696bp) protein (232aa)
UPI0003CF6E71 related cluster n=1 Tax=unknown RepID=UPI0003CF6E71
ABC transporter substrate-binding protein {ECO:0000313|EMBL:ESY75100.1}; TaxID=1287233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC221B00.;"
family 1 extracellular solute-binding protein
SCN18_26_2_15_R1_B_scaffold_1536_8
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7110..7793)
DNA (684bp) protein (228aa)
Transcriptional regulator, TetR family n=1 Tax=Sinorhizobium medicae (strain WSM419) RepID=A6ULM1_SINMW
TetR family transcriptional regulator
Transcriptional regulator, TetR family {ECO:0000313|EMBL:ABR64551.1}; TaxID=366394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium medicae (strain WSM419) (Ensifer medicae).;"
SCN18_26_2_15_R1_B_scaffold_1536_9
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7842..9035
DNA (1194bp) protein (398aa)
UPI0003CFFDE5 related cluster n=1 Tax=unknown RepID=UPI0003CFFDE5
UPF0261 protein MPLB_390022 {ECO:0000256|HAMAP-Rule:MF_00677}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
hypothetical protein
SCN18_26_2_15_R1_B_scaffold_1536_10
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9069..9905
DNA (837bp) protein (279aa)
hypothetical protein n=1 Tax=Rhizobium loti RepID=UPI00037DC2A7
Uncharacterized protein {ECO:0000313|EMBL:AID32608.1}; TaxID=763057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium huakuii 7653R.;"
TIM-barrel signal transduction protein
SCN18_26_2_15_R1_B_scaffold_1536_11
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10075..11115
DNA (1041bp) protein (347aa)
PREDICTED: alcohol dehydrogenase 1-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C14C1D
Zn-dependent alcohol dehydrogenase
Alcohol dehydrogenase {ECO:0000313|EMBL:ESY97428.1}; TaxID=1287240 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC229A00.;"
SCN18_26_2_15_R1_B_scaffold_1536_12
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11153..12526)
DNA (1374bp) protein (458aa)
Response regulator PleD n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HVR5_9RHIZ
Response regulator PleD {ECO:0000313|EMBL:EHK55187.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
response regulator receiver modulated diguanylate cyclase
SCN18_26_2_15_R1_B_scaffold_1536_13
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12560..12931)
DNA (372bp) protein (124aa)
Response regulator receiver n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TD21_MESCW
Chemotaxis protein CheY {ECO:0000313|EMBL:EXL01388.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
response regulator receiver
SCN18_26_2_15_R1_B_scaffold_1536_14
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13091..13390
DNA (300bp) protein (100aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. LSJC264A00 RepID=V7F0I3_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CDX29337.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
Protein of unknown function (DUF3572)
SCN18_26_2_15_R1_B_scaffold_1536_15
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13394..14212)
DNA (819bp) protein (273aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI000363B337
Exopolysaccharide production negative regulator {ECO:0000313|EMBL:ESZ16943.1}; TaxID=1287117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C085B000.;"
exopolysaccharide regulatory protein exoR
SCN18_26_2_15_R1_B_scaffold_1536_16
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14209..14547)
DNA (339bp) protein (113aa)
SCN18_26_2_15_R1_B_scaffold_1536_17
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14832..16001)
DNA (1170bp) protein (390aa)
Long-chain fatty acid transport protein n=1 Tax=Phyllobacterium sp. YR531 RepID=J3HUW8_9RHIZ
Long-chain fatty acid transport protein {ECO:0000313|EMBL:EJN06328.1}; Flags: Precursor;; TaxID=1144343 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Phyllobacterium.;" source="Phyllobacterium sp. YR531.;"
aromatic hydrocarbon degradation membrane protein
SCN18_26_2_15_R1_B_scaffold_1536_18
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(16350..19136)
DNA (2787bp) protein (929aa)
Valine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00026840}; EC=6.1.1.9 {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00105779};; Valyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02004}; TaxID=1287100 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C054A000.;"
valS; valyl-tRNA synthetase (EC:6.1.1.9)
UPI0003CFBD82 related cluster n=1 Tax=unknown RepID=UPI0003CFBD82
SCN18_26_2_15_R1_B_scaffold_1536_19
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19380..20075)
DNA (696bp) protein (232aa)
Uncharacterized protein n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5C0K2_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EIM75354.1}; TaxID=1189611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
hypothetical protein
SCN18_26_2_15_R1_B_scaffold_1536_20
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20271..20483)
DNA (213bp) protein (71aa)
transporter n=1 Tax=Hoeflea sp. 108 RepID=UPI000378FD2C
TolC family type I secretion outer membrane protein
Outer membrane efflux protein BepC {ECO:0000313|EMBL:CDX44776.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
SCN18_26_2_15_R1_B_scaffold_1536_21
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20459..21541)
DNA (1083bp) protein (361aa)
Outer membrane efflux protein BepC n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YD11_9RHIZ
Outer membrane efflux protein BepC {ECO:0000313|EMBL:EHH10483.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
outer membrane protein, nodT
SCN18_26_2_15_R1_B_scaffold_1536_22
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21764..22438)
DNA (675bp) protein (225aa)
Protein-L-isoaspartate O-methyltransferase n=2 Tax=Mesorhizobium RepID=V7EW33_9RHIZ
Protein-L-isoaspartate O-methyltransferase {ECO:0000313|EMBL:ESY36342.1}; TaxID=1287270 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNJC386A00.;"
protein-L-isoaspartate(D-aspartate)O-methyltrans ferase
SCN18_26_2_15_R1_B_scaffold_1536_trna_3
unknown

Not on your lists

comp(22516..22586)
DNA (71bp)
transferRNA Cys
SCN18_26_2_15_R1_B_scaffold_1536_23
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22696..22947)
DNA (252bp) protein (84aa)
UPI0003D03F7E related cluster n=1 Tax=unknown RepID=UPI0003D03F7E
Uncharacterized protein {ECO:0000313|EMBL:ESZ10846.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
hypothetical protein
SCN18_26_2_15_R1_B_scaffold_1536_trna_1
unknown

Not on your lists

23153..23224
DNA (72bp)
transferRNA Asn
SCN18_26_2_15_R1_B_scaffold_1536_24
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23796..26204
DNA (2409bp) protein (803aa)
Putative Hemolysin-type calcium-binding region n=1 Tax=Microcystis sp. T1-4 RepID=I4ICR7_9CHRO
Putative Hemolysin-type calcium-binding region {ECO:0000313|EMBL:CCI32091.1}; TaxID=1160279 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Microcystis.;" source="Microcystis sp. T1-4.;"
hypothetical protein
SCN18_26_2_15_R1_B_scaffold_1536_25
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26692..26898)
DNA (207bp) protein (69aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0003631B99
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EHJ96538.1}; TaxID=1107544 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens 5A.;"
SCN18_26_2_15_R1_B_scaffold_1536_26
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27231..27383)
DNA (153bp) protein (51aa)
SCN18_26_2_15_R1_B_scaffold_1536_27
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27600..27962)
DNA (363bp) protein (121aa)
Uncharacterized protein n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7Y3I6_MESOW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEH88379.1}; Flags: Precursor;; TaxID=536019 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075).;"
SCN18_26_2_15_R1_B_scaffold_1536_28
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28174..28611
DNA (438bp) protein (146aa)
3-dehydroquinate dehydratase (EC:4.2.1.10)
3-dehydroquinate dehydratase {ECO:0000255|HAMAP-Rule:MF_00169}; Short=3-dehydroquinase {ECO:0000255|HAMAP-Rule:MF_00169};; EC=4.2.1.10 {ECO:0000255|HAMAP-Rule:MF_00169};; Type II DHQase {ECO:0000255|HAMAP-Rule:MF_00169}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
3-dehydroquinate dehydratase n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=AROQ_MESSB
Displaying items 1-30 of 48 in total

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