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SCN18_26_2_15_R1_B_scaffold_778

Search features with annotation key words

Displaying items 1-30 of 54 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_26_2_15_R1_B_scaffold_778_1
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..1530
DNA (1530bp) protein (510aa)
monosaccharide-transporting ATPase (EC:3.6.3.17)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000377E953
Sugar ABC transporter ATP-binding protein {ECO:0000313|EMBL:KFG68283.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
SCN18_26_2_15_R1_B_scaffold_778_2
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1527..2546
DNA (1020bp) protein (340aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000361D5D1
Permease component of ribose/xylose/arabinose/galactoside ABC-type transporters {ECO:0000313|EMBL:EJN06280.1}; Flags: Precursor;; TaxID=1144343 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Phyllobacterium.;" source="Phyllobacterium sp. YR531.;"
permease component of ribose/xylose/arabinose/galactoside ABC-type transporters
SCN18_26_2_15_R1_B_scaffold_778_3
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2546..3568
DNA (1023bp) protein (341aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003648262
Sugar ABC transporter permease {ECO:0000313|EMBL:KFG68281.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
permease component of ribose/xylose/arabinose/galactoside ABC-type transporters
SCN18_26_2_15_R1_B_scaffold_778_4
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3599..4789
DNA (1191bp) protein (397aa)
Glycosyl hydrolase family 88 n=1 Tax=Burkholderia sp. (strain CCGE1002) RepID=D5WKA5_BURSC
glycosyl hydrolase family protein
Glycosyl hydrolase family 88 {ECO:0000313|EMBL:ADG19651.1}; TaxID=640511 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. (strain CCGE1002).;"
SCN18_26_2_15_R1_B_scaffold_778_5
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4865..5983
DNA (1119bp) protein (373aa)
Transcriptional regulator, LacI family (EC:5.1.1.1)
Transcriptional regulator, LacI family {ECO:0000313|EMBL:CDI12151.1}; EC=5.1.1.1 {ECO:0000313|EMBL:CDI12151.1};; TaxID=424182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. IRBG74.;"
Transcriptional regulator, LacI family n=1 Tax=Rhizobium sp. IRBG74 RepID=U4QIC4_9RHIZ
SCN18_26_2_15_R1_B_scaffold_778_6
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6041..7099
DNA (1059bp) protein (353aa)
Aldose 1-epimerase {ECO:0000256|PIRNR:PIRNR005096}; EC=5.1.3.3 {ECO:0000256|PIRNR:PIRNR005096};; Galactose mutarotase {ECO:0000256|PIRNR:PIRNR005096}; TaxID=1293439 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia epidermidihirudinis.;"
galM; aldose 1-epimerase (EC:5.1.3.3)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000361C2FF
SCN18_26_2_15_R1_B_scaffold_778_7
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7373..8155
DNA (783bp) protein (261aa)
3-oxoacyl-ACP reductase n=1 Tax=Rhizobium loti RepID=UPI00037732D8
oxidoreductase
Putative oxidoreductase {ECO:0000313|EMBL:BAB53347.1}; TaxID=266835 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Rhizobium loti (strain MAFF303099) (Mesorhizobium loti).;"
SCN18_26_2_15_R1_B_scaffold_778_8
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8325..10661)
DNA (2337bp) protein (779aa)
5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase (EC:2.1.1.14)
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase {ECO:0000255|HAMAP-Rule:MF_00172}; EC=2.1.1.14 {ECO:0000255|HAMAP-Rule:MF_00172};; Cobalamin-independent methionine synthase {ECO:0000255|HAMAP-Rule:MF_00172}; Methionine synthase, vitamin-B12 independent isozyme {ECO:0000255|HAMAP-Rule:MF_00172}; TaxID=266835 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Rhizobium loti (strain MAFF303099) (Mesorhizobium loti).;"
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=METE_RHILO
SCN18_26_2_15_R1_B_scaffold_778_9
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11041..12252)
DNA (1212bp) protein (404aa)
Isocitrate dehydrogenase [NADP] {ECO:0000256|PIRNR:PIRNR000108}; EC=1.1.1.42 {ECO:0000256|PIRNR:PIRNR000108};; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
Isocitrate dehydrogenase [NADP] n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HS51_9RHIZ
isocitrate dehydrogenase NADP-dependent
SCN18_26_2_15_R1_B_scaffold_778_10
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12413..12946)
DNA (534bp) protein (178aa)
Uncharacterized protein n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2PA71_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CDX27836.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
SCN18_26_2_15_R1_B_scaffold_778_11
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13109..13948
DNA (840bp) protein (280aa)
tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ {ECO:0000256|RuleBase:RU362024}; EC=2.1.1.200 {ECO:0000256|RuleBase:RU362024};; tRNA (cytidine(32)/uridine(32)-2'-O)-methyltransferase {ECO:0000256|RuleBase:RU362024}; tRNA Cm32/Um32 methyltransferase {ECO:0000256|RuleBase:RU362024}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
RNA methyltransferase n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FRX0_9RHIZ
RNA methyltransferase, TrmH family, group 1
SCN18_26_2_15_R1_B_scaffold_778_12
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13953..14762
DNA (810bp) protein (270aa)
Glutamate racemase {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00031911}; EC=5.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00041166};; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
glutamate racemase (EC:5.1.1.3)
Glutamate racemase n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HS48_9RHIZ
SCN18_26_2_15_R1_B_scaffold_778_13
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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14834..15028
DNA (195bp) protein (65aa)
Msr0042 protein n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q98NP7_RHILO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EZQ15368.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
SCN18_26_2_15_R1_B_scaffold_778_14
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15292..16035)
DNA (744bp) protein (248aa)
Octanoyltransferase {ECO:0000256|HAMAP-Rule:MF_00013, ECO:0000256|PIRNR:PIRNR016262}; EC=2.3.1.181 {ECO:0000256|HAMAP-Rule:MF_00013, ECO:0000256|PIRNR:PIRNR016262};; Lipoate-protein ligase B {ECO:0000256|HAMAP-Rule:MF_00013}; Lipoyl/octanoyl transferase {ECO:0000256|HAMAP-Rule:MF_00013}; Octanoyl-[acyl-carrier-protein]-protein N-octanoyltransferase {ECO:0000256|HAMAP-Rule:MF_00013}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
PREDICTED: plastidial lipoyltransferase 2-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C158D2
lipB; lipoyltransferase
SCN18_26_2_15_R1_B_scaffold_778_trna_1
unknown

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16202..16283
DNA (82bp)
transferRNA Leu
SCN18_26_2_15_R1_B_scaffold_778_15
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(16342..17409)
DNA (1068bp) protein (356aa)
integrase n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI00036927EB
Integrase {ECO:0000313|EMBL:KFB10380.1}; TaxID=472175 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor basaltis.;"
integrase
SCN18_26_2_15_R1_B_scaffold_778_16
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17418..17660)
DNA (243bp) protein (81aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F289_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KFB10379.1}; TaxID=472175 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor basaltis.;"
SCN18_26_2_15_R1_B_scaffold_778_17
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17660..18223)
DNA (564bp) protein (188aa)
UPI0003CE8142 related cluster n=1 Tax=unknown RepID=UPI0003CE8142
Uncharacterized protein {ECO:0000313|EMBL:ESY89072.1}; TaxID=1287232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC220B00.;"
SCN18_26_2_15_R1_B_scaffold_778_18
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18220..18621)
DNA (402bp) protein (134aa)
hypothetical protein n=1 Tax=Curvibacter lanceolatus RepID=UPI0003804C04
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADP96463.1}; TaxID=225937 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Marinobacter.;" source="Marinobacter adhaerens (strain HP15).;"
SCN18_26_2_15_R1_B_scaffold_778_19
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18618..19322)
DNA (705bp) protein (235aa)
Uncharacterized protein n=1 Tax=Ochrobactrum intermedium M86 RepID=M5JJJ3_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ELT46298.1}; TaxID=1234597 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum intermedium M86.;"
hypothetical protein
SCN18_26_2_15_R1_B_scaffold_778_20
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19315..19902)
DNA (588bp) protein (196aa)
DnaJ-class molecular chaperone with C-terminal Zn finger domain-containing protein n=1 Tax=Rhizobium sp. CF080 RepID=J2JG29_9RHIZ
Heat shock protein DnaJ domain protein {ECO:0000313|EMBL:EUB97229.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
heat shock protein DnaJ domain-containing protein
SCN18_26_2_15_R1_B_scaffold_778_21
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19902..21032)
DNA (1131bp) protein (377aa)
Viral (Superfamily 1) RNA helicase n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM597 RepID=I9N8B0_RHILT
Viral (Superfamily 1) RNA helicase {ECO:0000313|EMBL:EJB02937.1}; TaxID=754764 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM597.;"
hypothetical protein
SCN18_26_2_15_R1_B_scaffold_778_22
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(21022..21291)
DNA (270bp) protein (90aa)
SCN18_26_2_15_R1_B_scaffold_778_23
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(21281..21490)
DNA (210bp) protein (70aa)
Putative transcriptional regulator n=1 Tax=Terriglobus roseus (strain DSM 18391 / NRRL B-41598 / KBS 63) RepID=I3ZCI1_TERRK
putative transcriptional regulator
Putative transcriptional regulator {ECO:0000313|EMBL:AFL86949.1}; TaxID=926566 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Terriglobus.;" source="Terriglobus roseus (strain DSM 18391 / NRRL B-41598 / KBS 63).;"
SCN18_26_2_15_R1_B_scaffold_778_24
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21490..22197)
DNA (708bp) protein (236aa)
UPI0003CE8345 related cluster n=1 Tax=unknown RepID=UPI0003CE8345
Exodeoxyribonuclease X {ECO:0000313|EMBL:ESY88355.1}; TaxID=1287232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC220B00.;"
SCN18_26_2_15_R1_B_scaffold_778_25
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22194..22577)
DNA (384bp) protein (128aa)
SCN18_26_2_15_R1_B_scaffold_778_26
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22574..22735)
DNA (162bp) protein (54aa)
SCN18_26_2_15_R1_B_scaffold_778_27
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22735..23412)
DNA (678bp) protein (226aa)
Exonuclease RNase T and DNA polymerase III n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=A6WZ64_OCHA4
exonuclease RNase T and DNA polymerase III
Exonuclease RNase T and DNA polymerase III {ECO:0000313|EMBL:ABS14268.1}; TaxID=439375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168).;"
SCN18_26_2_15_R1_B_scaffold_778_28
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23414..23554)
DNA (141bp) protein (47aa)
SCN18_26_2_15_R1_B_scaffold_778_29
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23551..23922)
DNA (372bp) protein (124aa)
Displaying items 1-30 of 54 in total

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