ggKbase home page

SCN18_26_2_15_R1_B_scaffold_137

Search features with annotation key words

Displaying items 1-30 of 192 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_26_2_15_R1_B_scaffold_137_1
unknown

Not on your lists

2..85
DNA (84bp) protein (28aa)

This feature has no annotations

SCN18_26_2_15_R1_B_scaffold_137_2
unknown

Not on your lists

154..657
DNA (504bp) protein (168aa)

This feature has no annotations

SCN18_26_2_15_R1_B_scaffold_137_3
CN-SCN_Gemmatimonadetes_22x, CN-SCN_Gemmatimonadetes_22x, CN-SCN_Gemmatimonadetes_22x, CN-SCN_Gemmatimonadetes_22x, Gemmatimonadetes, Bacteria

Not on your lists

comp(1069..1641)
DNA (573bp) protein (191aa)
Toxin-antitoxin system, toxin component, PIN family n=1 Tax=Micrococcus luteus SK58 RepID=D3LL65_MICLU
Toxin-antitoxin system, toxin component, PIN family {ECO:0000313|EMBL:EZP58479.1}; TaxID=1270 species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Micrococcus.;" source="Micrococcus luteus (Micrococcus lysodeikticus).;"
hypothetical protein
SCN18_26_2_15_R1_B_scaffold_137_4
CN-SCN_Microbacterium_200x, Microbacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

Not on your lists

comp(1645..2190)
DNA (546bp) protein (182aa)
DNA binding domain, excisionase family n=1 Tax=Micrococcus luteus SK58 RepID=D3LL66_MICLU
DNA binding domain, excisionase family {ECO:0000313|EMBL:EZP64500.1}; TaxID=1270 species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Micrococcus.;" source="Micrococcus luteus (Micrococcus lysodeikticus).;"
DNA-binding protein, excisionase family
SCN18_26_2_15_R1_B_scaffold_137_trna_1
unknown

Not on your lists

comp(2394..2467)
DNA (74bp)
transferRNA Ile
SCN18_26_2_15_R1_B_scaffold_137_5
SCNPILOT_CONT_500_BF_Actinomycetales_73_43, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2537..3316)
DNA (780bp) protein (260aa)
hypothetical protein n=1 Tax=Dehalobacter sp. FTH1 RepID=UPI000363B466
hypothetical protein
Tax=BJP_08E140C01_Actinomycetales_67_18
SCN18_26_2_15_R1_B_scaffold_137_6
SCNPILOT_CONT_500_BF_Actinomycetales_73_43, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(3340..5955)
DNA (2616bp) protein (872aa)
gyrA; DNA gyrase subunit A (EC:5.99.1.3)
DNA gyrase subunit A n=1 Tax=Dehalobacter sp. FTH1 RepID=UPI0003765E11
Tax=BJP_08E140C01_Actinomycetales_67_18
SCN18_26_2_15_R1_B_scaffold_137_7
SCNPILOT_CONT_500_BF_Cellulomonas_73_12_partial, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6157..8178)
DNA (2022bp) protein (674aa)
gyrB_1; DNA gyrase subunit B (EC:5.99.1.3)
DNA gyrase subunit B n=1 Tax=Dehalobacter sp. FTH1 RepID=UPI000382442B
Tax=BJP_08E140C01_Actinomycetales_70_11
SCN18_26_2_15_R1_B_scaffold_137_8
CN-SCN_Microbacterium_200x, Microbacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

Not on your lists

comp(8472..10007)
DNA (1536bp) protein (512aa)
Glycoside/pentoside/hexuronide transporter n=1 Tax=Arthrobacter sp. AK-YN10 RepID=U1YSK0_9MICC
Uncharacterized protein {ECO:0000313|EMBL:KJK14041.1}; TaxID=1619947 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Terrabacter.;" source="Terrabacter sp. 28.;"
glycoside/pentoside/hexuronide transporter
SCN18_26_2_15_R1_B_scaffold_137_9
SCNPILOT_EXPT_300_BF_Actinomycetales_72_7_partial, SCNPILOT_EXPT_300_BF_Actinomycetales_72_7_partial, SCNPILOT_EXPT_300_BF_Actinomycetales_72_7_partial, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10176..11378
DNA (1203bp) protein (401aa)
hypothetical protein n=1 Tax=Dehalobacter sp. FTH1 RepID=UPI0003604646
hypothetical protein
Tax=BJP_08E140C01_Actinomycetales_70_11
SCN18_26_2_15_R1_B_scaffold_137_10
SCNPILOT_SOLID_1_TRIM150_Microbacterium_69_53, Microbacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

Not on your lists

comp(11537..12385)
DNA (849bp) protein (283aa)
UPI0003D7995A related cluster n=1 Tax=unknown RepID=UPI0003D7995A
Uncharacterized protein {ECO:0000313|EMBL:EPD32525.1}; TaxID=883161 species="Bacteria; Actinobacteria; Propionibacteriales; Propionibacteriaceae; Propionimicrobium.;" source="Propionimicrobium lymphophilum ACS-093-V-SCH5.;"
sugar phosphate isomerase/epimerase
SCN18_26_2_15_R1_B_scaffold_137_11
SCNPILOT_SOLID_1_TRIM150_Microbacterium_69_53, Microbacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

Not on your lists

comp(12387..13616)
DNA (1230bp) protein (410aa)
dehydrogenase n=1 Tax=Aestuariimicrobium kwangyangense RepID=UPI0003B66CA2
Uncharacterized protein {ECO:0000313|EMBL:EPD32526.1}; TaxID=883161 species="Bacteria; Actinobacteria; Propionibacteriales; Propionibacteriaceae; Propionimicrobium.;" source="Propionimicrobium lymphophilum ACS-093-V-SCH5.;"
oxidoreductase
SCN18_26_2_15_R1_B_scaffold_137_12
CN-SCN_Microbacterium_200x, Microbacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

Not on your lists

13758..14585
DNA (828bp) protein (276aa)
Xylose isomerase domain-containing protein TIM barrel n=1 Tax=Actinoplanes sp. N902-109 RepID=R4LN22_9ACTO
xylose isomerase domain-containing protein TIM barrel
Xylose isomerase domain-containing protein TIM barrel {ECO:0000313|EMBL:AGL19853.1}; TaxID=649831 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes sp. N902-109.;"
SCN18_26_2_15_R1_B_scaffold_137_13
CN-SCN_Microbacterium_200x, Microbacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

Not on your lists

14649..15656
DNA (1008bp) protein (336aa)
Dehydrogenase n=1 Tax=Actinoplanes friuliensis DSM 7358 RepID=U5W176_9ACTO
dehydrogenase
Dehydrogenase {ECO:0000313|EMBL:AGZ41646.1}; TaxID=1246995 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes friuliensis DSM 7358.;"
SCN18_26_2_15_R1_B_scaffold_137_14
SCNpilot_BF_INOC_Solirubrobacterales_68_7, SCNpilot_BF_INOC_Solirubrobacterales_68_7, SCNpilot_BF_INOC_Solirubrobacterales_68_7, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15765..17414
DNA (1650bp) protein (550aa)
N-6 adenine-specific DNA methylase (EC:2.1.1.72)
hypothetical protein n=1 Tax=Sporichthya polymorpha RepID=UPI0003629337
Putative methyltransferase {ECO:0000313|EMBL:GAB94430.1}; TaxID=1184609 species="Bacteria; Actinobacteria; Micrococcales; Dermatophilaceae; Kineosphaera.;" source="Kineosphaera limosa NBRC 100340.;"
SCN18_26_2_15_R1_B_scaffold_137_15
SCNPILOT_EXPT_1000_BF_Rhodanobacter_Plasmid_63_42, SCNPILOT_EXPT_1000_BF_Rhodanobacter_Plasmid_63_42, SCNPILOT_EXPT_1000_BF_Rhodanobacter_Plasmid_63_42, SCNPILOT_EXPT_1000_BF_Rhodanobacter_Plasmid_63_42, SCNPILOT_EXPT_1000_BF_Rhodanobacter_Plasmid_63_42, Plasmid-like

Not on your lists

17411..18388
DNA (978bp) protein (326aa)
Uncharacterized protein n=1 Tax=Tetrasphaera elongata Lp2 RepID=N0E0L1_9MICO
Uncharacterized protein {ECO:0000313|EMBL:CCH69281.1}; TaxID=1193181 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Tetrasphaera.;" source="Tetrasphaera elongata Lp2.;"
hypothetical protein
SCN18_26_2_15_R1_B_scaffold_137_16
CN-SCN_Microbacterium_200x, Microbacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

Not on your lists

comp(18441..19298)
DNA (858bp) protein (286aa)
peptide ABC transporter ATPase n=1 Tax=Arthrobacter sp. 131MFCol6.1 RepID=UPI000370F477
Peptide ABC transporter ATP-binding protein {ECO:0000313|EMBL:EYR64930.1}; TaxID=948458 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Actinotalea.;" source="Actinotalea ferrariae CF5-4.;"
ATPase component of various ABC-type transporters with duplicated ATPase domain
SCN18_26_2_15_R1_B_scaffold_137_17
SCNPILOT_SOLID_1_TRIM150_Microbacterium_69_53, Microbacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

Not on your lists

comp(19295..21154)
DNA (1860bp) protein (620aa)
ABC transporter n=1 Tax=Arthrobacter sp. 131MFCol6.1 RepID=UPI00037AEF6A
ABC transporter {ECO:0000313|EMBL:EYR64929.1}; TaxID=948458 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Actinotalea.;" source="Actinotalea ferrariae CF5-4.;"
dipeptide/oligopeptide/nickel ABC transporter ATPase
SCN18_26_2_15_R1_B_scaffold_137_18
SCNPILOT_SOLID_1_TRIM150_Microbacterium_69_53, Microbacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

Not on your lists

comp(21151..22092)
DNA (942bp) protein (314aa)
ABC transporter permease n=1 Tax=Arthrobacter sp. AK-YN10 RepID=U1YTQ5_9MICC
ABC transporter permease {ECO:0000313|EMBL:EYR64928.1}; TaxID=948458 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Actinotalea.;" source="Actinotalea ferrariae CF5-4.;"
dipeptide/oligopeptide/nickel ABC transporter permease
SCN18_26_2_15_R1_B_scaffold_137_19
SCNPILOT_SOLID_1_TRIM150_Microbacterium_69_53, Microbacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

Not on your lists

comp(22163..23698)
DNA (1536bp) protein (512aa)
hypothetical protein n=1 Tax=Microbacterium yannicii RepID=UPI00037EF87B
ABC transporter substrate-binding protein {ECO:0000313|EMBL:EYR64957.1}; TaxID=948458 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Actinotalea.;" source="Actinotalea ferrariae CF5-4.;"
family 5 extracellular solute-binding protein
SCN18_26_2_15_R1_B_scaffold_137_20
CN-SCN_Gemmatimonadetes_22x, CN-SCN_Gemmatimonadetes_22x, CN-SCN_Gemmatimonadetes_22x, CN-SCN_Gemmatimonadetes_22x, Gemmatimonadetes, Bacteria

Not on your lists

comp(24011..24691)
DNA (681bp) protein (227aa)
hypothetical protein n=1 Tax=Dehalobacter sp. FTH1 RepID=UPI00037608B6
NCAIR mutase-like protein
Tax=BJP_08E140C01_Actinomycetales_70_11
SCN18_26_2_15_R1_B_scaffold_137_21
SCNPILOT_CONT_1000_P_Pseudonocardia_72_23, SCNPILOT_CONT_1000_P_Pseudonocardia_72_23, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24684..25541)
DNA (858bp) protein (286aa)
hypothetical protein n=1 Tax=Dehalobacter sp. FTH1 RepID=UPI00037FCCD6
hypothetical protein
Tax=BJP_08E140C01_Actinomycetales_70_11
SCN18_26_2_15_R1_B_scaffold_137_22
SCNPILOT_CONT_500_BF_Cellulomonas_73_12_partial, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25840..27300)
DNA (1461bp) protein (487aa)
6-phosphogluconate dehydrogenase (EC:1.1.1.44)
6-phosphogluconate dehydrogenase n=1 Tax=Promicromonospora sukumoe RepID=UPI00037123C4
Tax=BJP_08E140C01_Actinomycetales_70_11
SCN18_26_2_15_R1_B_scaffold_137_23
CN-SCN_Microbacterium_200x, Microbacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

Not on your lists

27660..28715
DNA (1056bp) protein (352aa)
Transcriptional regulator, LacI family n=1 Tax=Modestobacter marinus (strain BC501) RepID=I4EW69_MODMB
LacI family transcriptional regulator
Tax=BJP_08E140C01_Actinomycetales_70_11
SCN18_26_2_15_R1_B_scaffold_137_24
SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, Bacteria

Not on your lists

comp(28649..29929)
DNA (1281bp) protein (427aa)
hypothetical protein n=1 Tax=Kribbella catacumbae RepID=UPI00037BE3D0
hypothetical protein
Tax=BJP_08E140C01_Actinomycetales_70_11
SCN18_26_2_15_R1_B_scaffold_137_25
SCNPILOT_CONT_500_BF_Cellulomonas_73_12_partial, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

30088..31518
DNA (1431bp) protein (477aa)
uxaC; uronate isomerase (EC:5.3.1.12)
glucuronate isomerase n=1 Tax=Ornithinimicrobium pekingense RepID=UPI0003B53879
Tax=BJP_08E140C01_Actinomycetales_70_11
SCN18_26_2_15_R1_B_scaffold_137_26
SCNPILOT_CONT_500_BF_Cellulomonas_73_12_partial, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

31515..32903
DNA (1389bp) protein (463aa)
mannitol dehydrogenase n=1 Tax=Aestuariimicrobium kwangyangense RepID=UPI0003B6ADF7
mannitol dehydrogenase
Tax=BJP_08E140C01_Actinomycetales_70_11
SCN18_26_2_15_R1_B_scaffold_137_27
SCNPILOT_SOLID_1_TRIM150_Microbacterium_69_53, Microbacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

Not on your lists

32968..33948
DNA (981bp) protein (327aa)
hypothetical protein n=1 Tax=Microbacteriaceae RepID=UPI00037317AB
SPG23_c4, whole genome shotgun sequence {ECO:0000313|EMBL:KIS28953.1}; TaxID=1610703 species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Arthrobacter.;" source="Arthrobacter sp. SPG23.;"
Transcriptional regulator, LacI family
SCN18_26_2_15_R1_B_scaffold_137_28
SCNPILOT_SOLID_1_TRIM150_Microbacterium_69_53, Microbacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

Not on your lists

comp(33977..35704)
DNA (1728bp) protein (576aa)
Beta-N-acetylhexosaminidase {ECO:0000256|SAAS:SAAS00114579}; EC=3.2.1.52 {ECO:0000256|SAAS:SAAS00114579};; TaxID=948458 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Actinotalea.;" source="Actinotalea ferrariae CF5-4.;"
glycosyl hydrolase n=1 Tax=Streptococcus merionis RepID=UPI00036CDFE0
Beta-hexosaminidase
SCN18_26_2_15_R1_B_scaffold_137_29
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(35754..36677)
DNA (924bp) protein (308aa)
UPI0003D7983A related cluster n=1 Tax=unknown RepID=UPI0003D7983A
Haloacid dehalogenase {ECO:0000313|EMBL:EYR64955.1}; TaxID=948458 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Actinotalea.;" source="Actinotalea ferrariae CF5-4.;"
haloacid dehalogenase
Displaying items 1-30 of 192 in total

View Taxonomy