ggKbase home page

SCN18_26_2_15_R1_B_scaffold_681

Search features with annotation key words

Displaying items 1-30 of 43 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_26_2_15_R1_B_scaffold_681_1
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3..812
DNA (810bp) protein (270aa)
SCN18_26_2_15_R1_B_scaffold_681_16S_1
unknown

Not on your lists

comp(4442..5955)
DNA (1514bp)
16S ribosomal RNA (16S rRNA)
SCN18_26_2_15_R1_B_scaffold_681_2
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6479..7750)
DNA (1272bp) protein (424aa)
tyrS; tyrosyl-tRNA synthetase (EC:6.1.1.1)
hypothetical protein n=1 Tax=Dehalobacter sp. FTH1 RepID=UPI000366ECCF
Tax=BJP_08E140C01_Actinomycetales_67_18
SCN18_26_2_15_R1_B_scaffold_681_3
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7828..8211
DNA (384bp) protein (128aa)
hypothetical protein n=1 Tax=Dehalobacter sp. FTH1 RepID=UPI00037B4EC2
hypothetical protein
Tax=BJP_08E140C01_Actinomycetales_70_11
SCN18_26_2_15_R1_B_scaffold_681_4
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8245..9636)
DNA (1392bp) protein (464aa)
argH; argininosuccinate lyase (EC:4.3.2.1)
hypothetical protein n=1 Tax=Dehalobacter sp. FTH1 RepID=UPI000375385C
Tax=BJP_08E140C01_Actinomycetales_70_11
SCN18_26_2_15_R1_B_scaffold_681_5
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9812..10303)
DNA (492bp) protein (164aa)
hypothetical protein n=1 Tax=Dehalobacter sp. FTH1 RepID=UPI000370B00C
arginine repressor ArgR
Tax=BJP_08E140C01_Actinomycetales_67_18
SCN18_26_2_15_R1_B_scaffold_681_6
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10300..11505)
DNA (1206bp) protein (402aa)
argD; acetylornithine aminotransferase (EC:2.6.1.11)
hypothetical protein n=1 Tax=Dehalobacter sp. FTH1 RepID=UPI0003790FB9
Tax=BJP_08E140C01_Actinomycetales_70_11
SCN18_26_2_15_R1_B_scaffold_681_7
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11502..12389)
DNA (888bp) protein (296aa)
acetylglutamate kinase n=1 Tax=Dehalobacter sp. FTH1 RepID=UPI0003604C97
acetylglutamate kinase
Tax=BJP_08E140C01_Actinomycetales_67_18
SCN18_26_2_15_R1_B_scaffold_681_8
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12386..13543)
DNA (1158bp) protein (386aa)
hypothetical protein n=1 Tax=Dehalobacter sp. FTH1 RepID=UPI0003680B5B
argJ; putative glutamate N-acetyltransferase/amino-acid acetyltransferase
Tax=BJP_08E140C01_Actinomycetales_70_11
SCN18_26_2_15_R1_B_scaffold_681_9
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13712..14737)
DNA (1026bp) protein (342aa)
argC; N-acetyl-gamma-glutamyl-phosphate reductase (EC:1.2.1.38)
hypothetical protein n=1 Tax=Dehalobacter sp. FTH1 RepID=UPI000372C6B8
Tax=BJP_08E140C01_Actinomycetales_70_11
SCN18_26_2_15_R1_B_scaffold_681_10
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14830..16086
DNA (1257bp) protein (419aa)
glutamyl-tRNA reductase (EC:1.2.1.70)
hypothetical protein n=1 Tax=Dehalobacter sp. FTH1 RepID=UPI0003786890
Tax=BJP_08E140C01_Actinomycetales_67_18
SCN18_26_2_15_R1_B_scaffold_681_11
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16083..17132
DNA (1050bp) protein (350aa)
uroporphyrinogen decarboxylase (EC:4.1.1.37)
hypothetical protein n=1 Tax=Dehalobacter sp. FTH1 RepID=UPI000378E835
Tax=BJP_08E140C01_Actinomycetales_70_11
SCN18_26_2_15_R1_B_scaffold_681_12
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17129..18256
DNA (1128bp) protein (376aa)
hypothetical protein n=1 Tax=Dehalobacter sp. FTH1 RepID=UPI0003711374
Fe-S oxidoreductase
Tax=BJP_08E140C01_Actinomycetales_70_11
SCN18_26_2_15_R1_B_scaffold_681_13
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18253..19653
DNA (1401bp) protein (467aa)
hemY; protoporphyrinogen oxidase (EC:1.3.3.4)
hypothetical protein n=1 Tax=Dehalobacter sp. FTH1 RepID=UPI00037B122F
Tax=BJP_08E140C01_Actinomycetales_67_18
SCN18_26_2_15_R1_B_scaffold_681_14
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19762..20436
DNA (675bp) protein (225aa)
hypothetical protein n=1 Tax=Dehalobacter sp. FTH1 RepID=UPI000360CD96
hypothetical protein
Tax=BJP_08E140C01_Actinomycetales_67_18
SCN18_26_2_15_R1_B_scaffold_681_15
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20433..21491
DNA (1059bp) protein (353aa)
hemH; ferrochelatase (EC:4.99.1.1)
hypothetical protein n=1 Tax=Dehalobacter sp. FTH1 RepID=UPI000372936D
Tax=BJP_08E140C01_Actinomycetales_70_11
SCN18_26_2_15_R1_B_scaffold_681_16
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21488..23119
DNA (1632bp) protein (544aa)
hemC; hydroxymethylbilane synthase (EC:2.5.1.61)
hypothetical protein n=1 Tax=Dehalobacter sp. FTH1 RepID=UPI00035FA900
Tax=BJP_08E140C01_Actinomycetales_67_18
SCN18_26_2_15_R1_B_scaffold_681_17
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23172..23954)
DNA (783bp) protein (261aa)
hypothetical protein n=1 Tax=Dehalobacter sp. FTH1 RepID=UPI000366C22B
haloacid dehalogenase
Tax=BJP_08E140C01_Actinomycetales_67_18
SCN18_26_2_15_R1_B_scaffold_681_18
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24074..25054
DNA (981bp) protein (327aa)
hypothetical protein n=1 Tax=Dehalobacter sp. FTH1 RepID=UPI0003763821
hemB; delta-aminolevulinic acid dehydrogenase hemb
Tax=BJP_08E140C01_Actinomycetales_70_11
SCN18_26_2_15_R1_B_scaffold_681_19
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25051..26358
DNA (1308bp) protein (436aa)
hypothetical protein n=1 Tax=Dehalobacter sp. FTH1 RepID=UPI00036F0E3F
glutamate-1-semialdehyde-2,1-aminomutase
Tax=BJP_08E140C01_Actinomycetales_67_18
SCN18_26_2_15_R1_B_scaffold_681_20
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26355..29435)
DNA (3081bp) protein (1027aa)
Regulator of chromosome condensation RCC1 id=4952089 bin=GWC2_Chloroflexi_73_18 species=Chloroflexus aggregans genus=Chloroflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
regulator of chromosome condensation, RCC1
Tax=BJP_08E140C01_Actinomycetales_70_11
SCN18_26_2_15_R1_B_scaffold_681_21
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(29432..30073)
DNA (642bp) protein (214aa)
S26 family peptidase n=1 Tax=Nesterenkonia sp. F RepID=UPI000255CB6C
hypothetical protein
Tax=BJP_08E140C01_Actinomycetales_70_11
SCN18_26_2_15_R1_B_scaffold_681_22
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(30192..30812)
DNA (621bp) protein (207aa)
ABC transporter sugar binding protein n=1 Tax=Leifsonia xyli subsp. cynodontis DSM 46306 RepID=U3P2A7_LEIXC
ABC transporter sugar binding protein
Uncharacterized protein {ECO:0000313|EMBL:AGW40430.1}; TaxID=1389489 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia xyli subsp. cynodontis DSM 46306.;"
SCN18_26_2_15_R1_B_scaffold_681_23
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(30971..31597)
DNA (627bp) protein (209aa)
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI0002E32D34
ABC transporter sugar binding protein
Tax=BJP_08E140C01_Actinomycetales_67_18
SCN18_26_2_15_R1_B_scaffold_681_24
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(32483..35005)
DNA (2523bp) protein (841aa)
pheT; phenylalanyl-tRNA synthetase subunit beta (EC:6.1.1.20)
hypothetical protein n=1 Tax=Dehalobacter sp. FTH1 RepID=UPI00035F99FA
Tax=BJP_08E140C01_Actinomycetales_70_11
SCN18_26_2_15_R1_B_scaffold_681_25
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(35002..36096)
DNA (1095bp) protein (365aa)
pheS; phenylalanyl-tRNA synthetase subunit alpha (EC:6.1.1.20)
hypothetical protein n=1 Tax=Dehalobacter sp. FTH1 RepID=UPI000374779B
Tax=BJP_08E140C01_Actinomycetales_70_11
SCN18_26_2_15_R1_B_scaffold_681_26
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(36117..36935)
DNA (819bp) protein (273aa)
RNA methyltransferase (EC:2.1.1.-)
hypothetical protein n=1 Tax=Dehalobacter sp. FTH1 RepID=UPI000371AFBA
Tax=BJP_08E140C01_Actinomycetales_70_11
SCN18_26_2_15_R1_B_scaffold_681_27
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(37006..37374)
DNA (369bp) protein (123aa)
50S ribosomal protein L20 n=1 Tax=Dehalobacter sp. FTH1 RepID=UPI00037B7048
rplT; 50S ribosomal protein L20
Tax=BJP_08E140C01_Actinomycetales_67_18
SCN18_26_2_15_R1_B_scaffold_681_28
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(37416..37622)
DNA (207bp) protein (69aa)
50S ribosomal protein L35 n=1 Tax=Dehalobacter sp. FTH1 RepID=UPI000361AA6A
rpmI; 50S ribosomal protein L35
Tax=BJP_08E140C01_Actinomycetales_70_11
SCN18_26_2_15_R1_B_scaffold_681_29
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(37648..38358)
DNA (711bp) protein (237aa)
translation initiation factor IF-3 n=1 Tax=Dehalobacter sp. FTH1 RepID=UPI00037B042F
infC; translation initiation factor IF-3
Tax=BJP_08E140C01_Actinomycetales_67_18
Displaying items 1-30 of 43 in total

View Taxonomy