ggKbase home page

SCN18_30_10_14_R2_B_scaffold_2006

Search features with annotation key words

Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R2_B_scaffold_2006_1
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..430)
DNA (429bp) protein (143aa)
Putative L-allo-threonine aldolase {ECO:0000313|EMBL:CCE07743.1}; EC=4.1.2.5 {ECO:0000313|EMBL:CCE07743.1};; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
Putative L-allo-threonine aldolase n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TMQ5_9BRAD
putative threonine aldolase
SCN18_30_10_14_R2_B_scaffold_2006_2
SCN_Thiobacillus_53x, SCN_Thiobacillus_53x, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(553..2532)
DNA (1980bp) protein (660aa)
nitrogen fixation protein anfA (sigma-54 dependendent transcription regulator n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C4E1C
Fis family sigma-54 specific transcriptional regulator
Sigma54 specific transcriptional regulator, Fis family {ECO:0000313|EMBL:ADB18810.1}; TaxID=530564 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Pirellula.;" source="Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) (Pirella; staleyi).;"
SCN18_30_10_14_R2_B_scaffold_2006_3
SCNpilot_BF_INOC_Clostridium_37_18, SCNpilot_BF_INOC_Clostridium_37_18, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2760..3329
DNA (570bp) protein (190aa)
leuD; 3-isopropylmalate dehydratase small subunit (EC:4.2.1.33)
3-isopropylmalate dehydratase small subunit n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C4E1B
3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit {ECO:0000313|EMBL:BAL54034.1}; TaxID=120965 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; environmental samples.;" source="uncultured planctomycete.;"
SCN18_30_10_14_R2_B_scaffold_2006_4
CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, Acidobacteria

Not on your lists

3380..4462
DNA (1083bp) protein (361aa)
ribokinase n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C4A39
PfkB domain-containing protein
PfkB domain protein {ECO:0000313|EMBL:ADG67925.1}; TaxID=521674 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Planctopirus.;" source="Planctopirus limnophila (strain ATCC 43296 / DSM 3776 / IFAM 1008 /; 290) (Planctomyces limnophilus).;"
SCN18_30_10_14_R2_B_scaffold_2006_5
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

4907..6934
DNA (2028bp) protein (676aa)
probable flagellar P-ring protein n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C587D
Flagellar P-ring protein FlgI {ECO:0000313|EMBL:BAL54478.1}; TaxID=120965 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; environmental samples.;" source="uncultured planctomycete.;"
flagellar P-ring protein
SCN18_30_10_14_R2_B_scaffold_2006_6
SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7018..10635
DNA (3618bp) protein (1206aa)
chromosome partition protein Smc n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C5662
chromosome segregation protein SMC
Tax=RBG_16_Planctomycetes_64_12_curated
SCN18_30_10_14_R2_B_scaffold_2006_7
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

10738..11550
DNA (813bp) protein (271aa)
hypothetical protein n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C507F
hypothetical protein
Tax=CSP1_5_NC10
SCN18_30_10_14_R2_B_scaffold_2006_8
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(11728..12480)
DNA (753bp) protein (251aa)
hypothetical protein n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C533F
TPR repeat-containing protein {ECO:0000313|EMBL:EMI27548.1}; TaxID=1263868 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Rhodopirellula.;" source="Rhodopirellula europaea SH398.;"
TPR repeat-containing protein
SCN18_30_10_14_R2_B_scaffold_2006_9
unknown

Not on your lists

comp(12477..12671)
DNA (195bp) protein (65aa)

This feature has no annotations

SCN18_30_10_14_R2_B_scaffold_2006_10
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

13073..14035
DNA (963bp) protein (321aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI00031DC3F2
hypothetical protein
Tax=RBG_16_Planctomycetes_64_10_curated
SCN18_30_10_14_R2_B_scaffold_2006_11
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

14032..14484
DNA (453bp) protein (151aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI0003188B3A
Uncharacterized protein {ECO:0000313|EMBL:EDL59600.1}; TaxID=344747 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Gimesia.;" source="Gimesia maris DSM 8797.;"
SCN18_30_10_14_R2_B_scaffold_2006_12
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

14497..15114
DNA (618bp) protein (206aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI0002F5BEF3
G8 domain-containing protein
G8 domain-containing protein {ECO:0000313|EMBL:AGA27791.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
Displaying 12 items

View Taxonomy