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SCN18_30_10_14_R2_B_scaffold_2253

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Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R2_B_scaffold_2253_1
SCNPILOT_EXPT_750_BF_Xanthomonadales_66_150, SCNPILOT_EXPT_750_BF_Xanthomonadales_66_150, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(109..1944)
DNA (1836bp) protein (612aa)
hypothetical protein n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C3A66
Uncharacterized protein {ECO:0000313|EMBL:EOS48738.1}; TaxID=397290 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium A2.;"
hypothetical protein
SCN18_30_10_14_R2_B_scaffold_2253_2

Not on your lists

comp(1990..2883)
DNA (894bp) protein (298aa)
hypothetical protein n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C3A65
Uncharacterized protein {ECO:0000313|EMBL:KKL81218.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
SCN18_30_10_14_R2_B_scaffold_2253_3
SCNPILOT_CONT_1000_P_Alphaproteobacteria_novel_41_6_7, SCNPILOT_CONT_1000_P_Alphaproteobacteria_novel_41_6_7, SCNPILOT_CONT_1000_P_Alphaproteobacteria_novel_41_6_7, SCNPILOT_CONT_1000_P_Alphaproteobacteria_novel_41_6_7, SCNPILOT_CONT_1000_P_Alphaproteobacteria_novel_41_6_7, Bacteria

Not on your lists

comp(2946..3731)
DNA (786bp) protein (262aa)
ABC-type polysaccharide/polyol phosphate export systems, permease component n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C3A64
Transport permease protein {ECO:0000256|RuleBase:RU361157}; TaxID=883101 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 274B.;"
ABC-2 type transporter family protein
SCN18_30_10_14_R2_B_scaffold_2253_4
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(3908..5215)
DNA (1308bp) protein (436aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI0003107C2F
sugar phosphate permease
Sugar phosphate permease {ECO:0000313|EMBL:AGA25327.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
SCN18_30_10_14_R2_B_scaffold_2253_5
SCNPILOT_CONT_750_BF_Acidobacteria_60_9_7, SCNPILOT_CONT_750_BF_Acidobacteria_60_9_7, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

5309..6901
DNA (1593bp) protein (531aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI0003754DD8
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA31018.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
SCN18_30_10_14_R2_B_scaffold_2253_6
SCNPILOT_CONT_750_BF_Acidobacteria_60_9_7, SCNPILOT_CONT_750_BF_Acidobacteria_60_9_7, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

7003..8118
DNA (1116bp) protein (372aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI00031442C1
mandelate racemase/muconate lactonizing protein
Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
SCN18_30_10_14_R2_B_scaffold_2253_7
SCNPILOT_CONT_1000_P_Verrucomicrobia_61_8, SCNPILOT_CONT_1000_P_Verrucomicrobia_61_8, SCNPILOT_CONT_1000_P_Verrucomicrobia_61_8, SCNPILOT_CONT_1000_P_Verrucomicrobia_61_8, SCNPILOT_CONT_1000_P_Verrucomicrobia_61_8, Verrucomicrobia

Not on your lists

8276..9352
DNA (1077bp) protein (359aa)
hypothetical protein n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C58A0
Uncharacterized protein {ECO:0000313|EMBL:EIT69763.1}; TaxID=1172194 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Sinobacteraceae; Hydrocarboniphaga.;" source="Hydrocarboniphaga effusa AP103.;"
hypothetical protein
SCN18_30_10_14_R2_B_scaffold_2253_8
SCNpilot_BF_INOC_Dechloromonas_67_13, SCNpilot_BF_INOC_Dechloromonas_67_13, SCNpilot_BF_INOC_Dechloromonas_67_13, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9893..10774)
DNA (882bp) protein (294aa)
transglutaminase n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C3672
transglutaminase
Transglutaminase domain protein {ECO:0000313|EMBL:ADG67327.1}; TaxID=521674 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Planctopirus.;" source="Planctopirus limnophila (strain ATCC 43296 / DSM 3776 / IFAM 1008 /; 290) (Planctomyces limnophilus).;"
SCN18_30_10_14_R2_B_scaffold_2253_9
Magnetospirillum gryphiswaldense_SCNpilot_P_inoc_Magnetospirillum_64_120, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10966..13224)
DNA (2259bp) protein (753aa)
hypothetical protein, partial n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C5107
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB17514.1}; TaxID=530564 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Pirellula.;" source="Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) (Pirella; staleyi).;"
SCN18_30_10_14_R2_B_scaffold_2253_10
Hydrogenophaga sp. PBC_SCNpilot_P_inoc_Hydrogenophaga_70_12, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13199..17197)
DNA (3999bp) protein (1333aa)
IMP dehydrogenase n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C5108
Transglutaminase {ECO:0000313|EMBL:ENO74723.1}; TaxID=497321 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. 63.;"
transglutaminase-like domain protein
SCN18_30_10_14_R2_B_scaffold_2253_11
SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, Bacteria

Not on your lists

comp(17338..18342)
DNA (1005bp) protein (335aa)
A predicted alpha-helical domain with a conserved ER motif family protein n=1 Tax=Lyngbya aestuarii BL J RepID=U7QAS4_9CYAN
Uncharacterized protein {ECO:0000313|EMBL:KEI67991.1}; TaxID=388467 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Planktothrix.;" source="Planktothrix agardhii NIVA-CYA 126/8.;"
protein containing domains DUF403
SCN18_30_10_14_R2_B_scaffold_2253_12
SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, Bacteria

Not on your lists

comp(18503..20020)
DNA (1518bp) protein (506aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9ER80_SORC5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAN97269.1}; TaxID=448385 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain; So ce56)).;"
SCN18_30_10_14_R2_B_scaffold_2253_13
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20287..21651)
DNA (1365bp) protein (455aa)
pyruvate kinase (EC:2.7.1.40)
Pyruvate kinase {ECO:0000256|RuleBase:RU000504}; EC=2.7.1.40 {ECO:0000256|RuleBase:RU000504};; TaxID=762633 species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Thermus.;" source="Thermus thermophilus (strain SG0.5JP17-16).;"
pyruvate kinase n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C35F8
SCN18_30_10_14_R2_B_scaffold_2253_14
Blastopirellula marina, Blastopirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

21695..22255
DNA (561bp) protein (187aa)
hypothetical protein n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C3899
Uncharacterized protein {ECO:0000313|EMBL:EAQ77185.1}; TaxID=314230 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Blastopirellula.;" source="Blastopirellula marina DSM 3645.;"
hypothetical protein
SCN18_30_10_14_R2_B_scaffold_2253_15
SCNPILOT_CONT_300_BF_Rhizobiales_67_6_partial, SCNPILOT_CONT_300_BF_Rhizobiales_67_6_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(22301..22831)
DNA (531bp) protein (177aa)
ribosomal protein L17 n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C4718
rplQ; 50S ribosomal protein L17
Tax=RBG_13_Planctomycetes_62_9_curated
SCN18_30_10_14_R2_B_scaffold_2253_16
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(23018..24019)
DNA (1002bp) protein (334aa)
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
DNA-directed RNA polymerase subunit alpha n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C4717
DNA-directed RNA polymerase subunit alpha
SCN18_30_10_14_R2_B_scaffold_2253_17
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists


comp(24238..24846)
DNA (609bp) protein (203aa)
30S ribosomal protein S4 n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C3E34
30S ribosomal protein S4
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; TaxID=575540 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Isosphaera.;" source="Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B).;"
SCN18_30_10_14_R2_B_scaffold_2253_18
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists


comp(25055..25435)
DNA (381bp) protein (127aa)
30S ribosomal protein S11 n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C3E33
30S ribosomal protein S11
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
SCN18_30_10_14_R2_B_scaffold_2253_19
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists


comp(25556..25936)
DNA (381bp) protein (127aa)
30S ribosomal protein S13 n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C3E32
30S ribosomal protein S13
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=521674 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Planctopirus.;" source="Planctopirus limnophila (strain ATCC 43296 / DSM 3776 / IFAM 1008 /; 290) (Planctomyces limnophilus).;"
SCN18_30_10_14_R2_B_scaffold_2253_20
SCNPILOT_EXPT_1000_BF_Thiobacillus_strain2_65_27, SCNPILOT_EXPT_1000_BF_Thiobacillus_strain2_65_27, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26054..26167)
DNA (114bp) protein (38aa)
50S ribosomal protein L36 n=1 Tax=Sutterella sp. CAG:397 RepID=R7C4S6_9BURK
50S ribosomal protein L36
50S ribosomal protein L36 {ECO:0000256|HAMAP-Rule:MF_00251, ECO:0000256|RuleBase:RU000571}; TaxID=1262976 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Sutterellaceae; Sutterella; environmental samples.;" source="Sutterella sp. CAG:397.;"
SCN18_30_10_14_R2_B_scaffold_2253_21
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(26265..27095)
DNA (831bp) protein (277aa)
methionine aminopeptidase (EC:3.4.11.18)
methionine aminopeptidase n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C3E30
Tax=RBG_16_Planctomycetes_64_12_curated
SCN18_30_10_14_R2_B_scaffold_2253_22
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists


comp(27116..28501)
DNA (1386bp) protein (462aa)
preprotein translocase subunit SecY, partial n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C3E2E
preprotein translocase subunit SecY
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465, ECO:0000256|RuleBase:RU000537}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
SCN18_30_10_14_R2_B_scaffold_2253_23
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists


comp(28622..29128)
DNA (507bp) protein (169aa)
50S ribosomal protein L15 n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C4512
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341, ECO:0000256|RuleBase:RU003889}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
rplO; 50S ribosomal protein L15
SCN18_30_10_14_R2_B_scaffold_2253_24
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists


comp(29128..29640)
DNA (513bp) protein (171aa)
30S ribosomal protein S5 n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C4513
30S ribosomal protein S5
30S ribosomal protein S5 {ECO:0000256|HAMAP-Rule:MF_01307, ECO:0000256|SAAS:SAAS00085406}; TaxID=575540 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Isosphaera.;" source="Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B).;"
SCN18_30_10_14_R2_B_scaffold_2253_25
SCNpilot_BF_INOC_Flavobacterium_39_30, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(29693..30184)
DNA (492bp) protein (164aa)
50S ribosomal protein L18 n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C4514
large subunit ribosomal protein L18
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337}; TaxID=883154 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Myroides.;" source="Myroides odoratimimus CIP 101113.;"
SCN18_30_10_14_R2_B_scaffold_2253_26
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists


comp(30298..30843)
DNA (546bp) protein (182aa)
50S ribosomal protein L6 n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C4515
50S ribosomal protein L6
50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365, ECO:0000256|RuleBase:RU003870}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
SCN18_30_10_14_R2_B_scaffold_2253_27
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists


comp(30972..31421)
DNA (450bp) protein (150aa)
30S ribosomal protein S8 n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C4516
rpsH; 30S ribosomal protein S8
Tax=RBG_16_Planctomycetes_64_12_curated
SCN18_30_10_14_R2_B_scaffold_2253_28
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists


comp(31446..31526)
DNA (81bp) protein (27aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI0002E59620
30S ribosomal protein S14
30S ribosomal protein S14 type Z {ECO:0000256|HAMAP-Rule:MF_01364, ECO:0000256|SAAS:SAAS00014984}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
Displaying 28 items

View Taxonomy