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SCN18_30_10_14_R2_B_scaffold_2433

Search features with annotation key words

Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R2_B_scaffold_2433_1
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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2..952
DNA (951bp) protein (317aa)
hypothetical protein n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C35A5
Uncharacterized protein {ECO:0000313|EMBL:EDL60886.1}; TaxID=344747 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Gimesia.;" source="Gimesia maris DSM 8797.;"
hypothetical protein
SCN18_30_10_14_R2_B_scaffold_2433_2
Sphingopyxis sp. MC1_SCNPILOT_EXPT_500_BF_STEP10_Sphingopyxis_65_8, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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949..2760
DNA (1812bp) protein (604aa)
probable calmodulin n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C35A4
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA28195.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
SCN18_30_10_14_R2_B_scaffold_2433_3
unknown

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comp(2776..3519)
DNA (744bp) protein (248aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI00036F8FB8
SCN18_30_10_14_R2_B_scaffold_2433_4
SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, Bacteria

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comp(3576..4712)
DNA (1137bp) protein (379aa)
SCN18_30_10_14_R2_B_scaffold_2433_5
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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4788..5951
DNA (1164bp) protein (388aa)
23S rRNA m(2)A-2503 methyltransferase (EC:2.1.1.-)
Probable dual-specificity RNA methyltransferase RlmN {ECO:0000256|HAMAP-Rule:MF_01849}; EC=2.1.1.192 {ECO:0000256|HAMAP-Rule:MF_01849};; 23S rRNA (adenine(2503)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; 23S rRNA m2A2503 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; Ribosomal RNA large subunit methyltransferase N {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA (adenine(37)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA m2A37 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; TaxID=575540 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Isosphaera.;" source="Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B).;"
50S rRNA methyltransferase n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C54F2
SCN18_30_10_14_R2_B_scaffold_2433_6
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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6152..6811
DNA (660bp) protein (220aa)
RNA polymerase sigma70 n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C54F1
sigma-70 family RNA polymerase sigma factor
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
SCN18_30_10_14_R2_B_scaffold_2433_7
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

6817..8568
DNA (1752bp) protein (584aa)
hypothetical protein n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C54F0
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADV61344.1}; TaxID=575540 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Isosphaera.;" source="Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B).;"
SCN18_30_10_14_R2_B_scaffold_2433_8
unknown

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8565..9119
DNA (555bp) protein (185aa)

This feature has no annotations

SCN18_30_10_14_R2_B_scaffold_2433_9
SCNPILOT_SOLID_1_TRIM150_Rhodanobacter_67_12, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(9193..10317)
DNA (1125bp) protein (375aa)
hypothetical protein n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C3D60
rlmL; 23S rRNA (2-N-methyl-G2445)-methyltransferase
23S rRNA (2-N-methyl-G2445)-methyltransferase, putative {ECO:0000313|EMBL:ABB30641.1}; TaxID=269799 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210).;"
SCN18_30_10_14_R2_B_scaffold_2433_10
unknown

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comp(10415..10861)
DNA (447bp) protein (149aa)
hypothetical protein n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C3D5F
SCN18_30_10_14_R2_B_scaffold_2433_11
CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, Acidobacteria

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comp(10915..12159)
DNA (1245bp) protein (415aa)
Serine hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00051}; Short=SHMT {ECO:0000256|HAMAP-Rule:MF_00051};; Short=Serine methylase {ECO:0000256|HAMAP-Rule:MF_00051};; EC=2.1.2.1 {ECO:0000256|HAMAP-Rule:MF_00051};; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
serine hydroxymethyltransferase n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C3D5E
glycine/serine hydroxymethyltransferase
SCN18_30_10_14_R2_B_scaffold_2433_12
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(12267..12875)
DNA (609bp) protein (203aa)
HAD-superfamily hydrolase, subfamily IA, variant 3 n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C3D5C
haloacid dehalogenase superfamily protein
Tax=RBG_16_Deltaproteobacteria_64_85_curated
Displaying 12 items

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