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SCN18_30_10_14_R2_B_scaffold_2829

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R2_B_scaffold_2829_1
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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comp(2..577)
DNA (576bp) protein (192aa)
D-aminoacylase domain protein, partial n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C4EAE
TIM-barrel fold metal-dependent hydrolase
Putative TIM-barrel fold metal-dependent hydrolase {ECO:0000313|EMBL:AGA25838.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
SCN18_30_10_14_R2_B_scaffold_2829_2
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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comp(721..4137)
DNA (3417bp) protein (1139aa)
protein-export membrane protein secD n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C5004
Uncharacterized protein {ECO:0000313|EMBL:KKN84899.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
secD; protein-export membrane protein secD
SCN18_30_10_14_R2_B_scaffold_2829_3
SCN_Comamonadaceae_20x, SCN_Comamonadaceae_20x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(4207..4554)
DNA (348bp) protein (116aa)
hypothetical protein n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C5003
Preprotein translocase subunit YajC {ECO:0000313|EMBL:KJB93990.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
Protein translocase subunit yajC
SCN18_30_10_14_R2_B_scaffold_2829_4
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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comp(4607..5722)
DNA (1116bp) protein (372aa)
tRNA-guanine transglycosylase (EC:2.4.2.29)
queuine tRNA-ribosyltransferase n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C5002
Tax=RBG_16_Planctomycetes_64_12_curated
SCN18_30_10_14_R2_B_scaffold_2829_5
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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comp(5816..7156)
DNA (1341bp) protein (447aa)
probable DNA-directed RNA polymerase alpha chain n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C3B80
DNA-directed RNA polymerase subunit alpha {ECO:0000313|EMBL:BAL54204.1}; Flags: Fragment;; TaxID=120965 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; environmental samples.;" source="uncultured planctomycete.;"
RNA polymerase subunit alpha domain-containing protein
SCN18_30_10_14_R2_B_scaffold_2829_6
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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comp(7301..8662)
DNA (1362bp) protein (454aa)
choline sulfatase n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001744DD5
Choline sulfatase {ECO:0000313|EMBL:EDL61435.1}; TaxID=344747 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Gimesia.;" source="Gimesia maris DSM 8797.;"
sulfatase
SCN18_30_10_14_R2_B_scaffold_2829_7
CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, Acidobacteria

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comp(8681..9451)
DNA (771bp) protein (257aa)
5'-nucleotidase SurE {ECO:0000256|HAMAP-Rule:MF_00060}; EC=3.1.3.5 {ECO:0000256|HAMAP-Rule:MF_00060};; Nucleoside 5'-monophosphate phosphohydrolase {ECO:0000256|HAMAP-Rule:MF_00060}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
stationary phase survival protein SurE n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C3CF1
5''/3''-nucleotidase SurE
SCN18_30_10_14_R2_B_scaffold_2829_8
CN-SCN_Mesorhizobium_20x, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9513..10592)
DNA (1080bp) protein (360aa)
hypothetical protein n=1 Tax=Smaragdicoccus niigatensis RepID=UPI000370A0BF
Uncharacterized protein Rv1498c; TaxID=83332 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex.;" source="Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv).;"
methyltransferase type 11
SCN18_30_10_14_R2_B_scaffold_2829_9
unknown

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10775..11215
DNA (441bp) protein (147aa)
hypothetical protein n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C3AF4
SCN18_30_10_14_R2_B_scaffold_2829_10
SCNPILOT_EXPT_750_BF_Nitrosomonadales_56_52, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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11250..12023
DNA (774bp) protein (258aa)
Pyridoxine 5'-phosphate synthase {ECO:0000255|HAMAP-Rule:MF_00279}; Short=PNP synthase {ECO:0000255|HAMAP-Rule:MF_00279};; EC=2.6.99.2 {ECO:0000255|HAMAP-Rule:MF_00279};; TaxID=321327 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus.;" source="Synechococcus sp. (strain JA-3-3Ab) (Cyanobacteria bacterium; Yellowstone A-Prime).;"
pyridoxine 5''''-phosphate synthase n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C3AF3
pdxJ; pyridoxine 5'-phosphate synthase
SCN18_30_10_14_R2_B_scaffold_2829_11
unknown

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comp(12033..13448)
DNA (1416bp) protein (472aa)

This feature has no annotations

SCN18_30_10_14_R2_B_scaffold_2829_12
CN-SCN_Erythrobacter_14x, CN-SCN_Erythrobacter_14x, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13461..14621)
DNA (1161bp) protein (387aa)
putative dioxygenase alpha subunit yeaW n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C360F
Rieske (2Fe-2S) domain-containing protein {ECO:0000313|EMBL:EMB18211.1}; TaxID=1263867 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Rhodopirellula.;" source="Rhodopirellula europaea 6C.;"
dioxygenase alpha subunit yeaW
SCN18_30_10_14_R2_B_scaffold_2829_13
SCNPILOT_CONT_750_BF_Acidobacteria_60_9_7, SCNPILOT_CONT_750_BF_Acidobacteria_60_9_7, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

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comp(14748..15794)
DNA (1047bp) protein (349aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI00036D8317
signal peptide peptidase SppA, 36K type
Signal peptide peptidase SppA, 36K type {ECO:0000313|EMBL:ADV62697.1}; Flags: Precursor;; TaxID=575540 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Isosphaera.;" source="Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B).;"
SCN18_30_10_14_R2_B_scaffold_2829_14
unknown

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16148..16507
DNA (360bp) protein (120aa)
beta-ketoacyl synthase, partial n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C4A12
Displaying 14 items

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