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SCN18_30_10_14_R2_B_scaffold_995

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R2_B_scaffold_995_1
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

2..574
DNA (573bp) protein (191aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
ATP-dependent DNA helicase n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C5306
DNA/RNA helicase
SCN18_30_10_14_R2_B_scaffold_995_2
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(681..1568)
DNA (888bp) protein (296aa)
serine/threonine-protein kinase n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C5043
Serine/threonine-protein kinase {ECO:0000313|EMBL:EDL57658.1}; TaxID=344747 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Gimesia.;" source="Gimesia maris DSM 8797.;"
serine/threonine protein kinase-related protein
SCN18_30_10_14_R2_B_scaffold_995_3
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(1677..2531)
DNA (855bp) protein (285aa)
acetyl-CoA carboxylase subunit beta n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C5044
acetyl-CoA carboxylase, carboxyl transferase subunit beta
Tax=RBG_16_Planctomycetes_64_12_curated
SCN18_30_10_14_R2_B_scaffold_995_4
SCNPILOT_EXPT_500_BF_STEP10_Armatimonadetes_55_34, SCNPILOT_EXPT_500_BF_STEP10_Armatimonadetes_55_34, SCNPILOT_EXPT_500_BF_STEP10_Armatimonadetes_55_34, SCNPILOT_EXPT_500_BF_STEP10_Armatimonadetes_55_34, SCNPILOT_EXPT_500_BF_STEP10_Armatimonadetes_55_34, Bacteria

Not on your lists

comp(2582..3796)
DNA (1215bp) protein (405aa)
Phosphoglycerate kinase {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532}; EC=2.7.2.3 {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532};; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
phosphoglycerate kinase n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C5282
3-phosphoglycerate kinase
SCN18_30_10_14_R2_B_scaffold_995_5
unknown

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comp(3821..4375)
DNA (555bp) protein (185aa)

This feature has no annotations

SCN18_30_10_14_R2_B_scaffold_995_6
SCNPILOT_CONT_1000_P_Verrucomicrobia_61_8, SCNPILOT_CONT_1000_P_Verrucomicrobia_61_8, SCNPILOT_CONT_1000_P_Verrucomicrobia_61_8, SCNPILOT_CONT_1000_P_Verrucomicrobia_61_8, SCNPILOT_CONT_1000_P_Verrucomicrobia_61_8, Verrucomicrobia

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comp(4399..5451)
DNA (1053bp) protein (351aa)
Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU361160}; EC=1.2.1.- {ECO:0000256|RuleBase:RU361160};; TaxID=1519464 species="Bacteria; Chlorobi; Chlorobia; Chlorobiales; Chlorobiaceae; Chlorobium/Pelodictyon group; Chlorobium.;" source="Chlorobium sp. GBChlB.;"
glyceraldehyde-3-phosphate dehydrogenase, type I (EC:1.2.1.12)
glyceraldehyde-3-phosphate dehydrogenase n=1 Tax=Zavarzinella formosa RepID=UPI000308D107
SCN18_30_10_14_R2_B_scaffold_995_7
CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, Acidobacteria

Not on your lists

comp(5713..7650)
DNA (1938bp) protein (646aa)
DNA topoisomerase (EC:5.99.1.3)
DNA topoisomerase n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C4DBC
DNA gyrase subunit B {ECO:0000313|EMBL:BAL54992.1}; TaxID=120965 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; environmental samples.;" source="uncultured planctomycete.;"
SCN18_30_10_14_R2_B_scaffold_995_8
CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, Acidobacteria

Not on your lists


comp(7870..10242)
DNA (2373bp) protein (791aa)
DNA topoisomerase (ATP-hydrolyzing) {ECO:0000256|SAAS:SAAS00075954}; EC=5.99.1.3 {ECO:0000256|SAAS:SAAS00075954};; TaxID=120965 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; environmental samples.;" source="uncultured planctomycete.;"
DNA topoisomerase (EC:5.99.1.3)
DNA topoisomerase n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C4DBB
SCN18_30_10_14_R2_B_scaffold_995_9
Hydrogenophaga sp. PBC_SCNpilot_P_inoc_Hydrogenophaga_70_12, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(10438..11313)
DNA (876bp) protein (292aa)
hypothetical protein n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C4DBA
SCN18_30_10_14_R2_B_scaffold_995_10
SCNpilot_BF_INOC_Bacteroidetes_43_41, SCNpilot_BF_INOC_Bacteroidetes_43_41, SCNpilot_BF_INOC_Bacteroidetes_43_41, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(11411..12760)
DNA (1350bp) protein (450aa)
hypothetical protein n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C4DB9
SCN18_30_10_14_R2_B_scaffold_995_11
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

12999..14486
DNA (1488bp) protein (496aa)
Thiamine-phosphate synthase {ECO:0000256|RuleBase:RU003826}; EC=2.5.1.3 {ECO:0000256|RuleBase:RU003826};; Thiamine-phosphate pyrophosphorylase {ECO:0000256|RuleBase:RU003826}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
thiamine-phosphate pyrophosphorylase n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C4B74
thiamine-phosphate pyrophosphorylase
SCN18_30_10_14_R2_B_scaffold_995_12
unknown

Not on your lists

14633..15178
DNA (546bp) protein (182aa)
hypothetical protein n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C4B73
SCN18_30_10_14_R2_B_scaffold_995_13
SCNPILOT_EXPT_500_BF_STEP10_Armatimonadetes_55_34, SCNPILOT_EXPT_500_BF_STEP10_Armatimonadetes_55_34, SCNPILOT_EXPT_500_BF_STEP10_Armatimonadetes_55_34, SCNPILOT_EXPT_500_BF_STEP10_Armatimonadetes_55_34, SCNPILOT_EXPT_500_BF_STEP10_Armatimonadetes_55_34, Bacteria

Not on your lists

comp(15211..15924)
DNA (714bp) protein (238aa)
hypothetical protein n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C4B71
Uncharacterized protein {ECO:0000313|EMBL:ELP29599.1}; TaxID=993516 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Rhodopirellula.;" source="Rhodopirellula baltica SWK14.;"
phytanoyl-CoA dioxygenase
SCN18_30_10_14_R2_B_scaffold_995_14
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(15921..17393)
DNA (1473bp) protein (491aa)
amino acid permease-associated region n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C4B70
amino acid transporter
Amino acid transporter {ECO:0000313|EMBL:AGA30917.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
SCN18_30_10_14_R2_B_scaffold_995_15
SCNPILOT_EXPT_300_BF_Thiobacillus_62_448, SCNPILOT_EXPT_300_BF_Thiobacillus_62_448, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17438..18292)
DNA (855bp) protein (285aa)
formyltetrahydrofolate deformylase (EC:3.5.1.10)
formyltetrahydrofolate deformylase n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C4B6F
Tax=BJP_S1_SUB10_Methylophilales_55_32
SCN18_30_10_14_R2_B_scaffold_995_16
unknown

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comp(18289..18930)
DNA (642bp) protein (214aa)

This feature has no annotations

SCN18_30_10_14_R2_B_scaffold_995_17
CN-SCN_Microbacterium_27x, Microbacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

Not on your lists

comp(18954..21350)
DNA (2397bp) protein (799aa)
helicase n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C3881
DEAD/DEAH box helicase
DEAD/DEAH box helicase domain protein {ECO:0000313|EMBL:ADB16452.1}; TaxID=530564 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Pirellula.;" source="Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) (Pirella; staleyi).;"
SCN18_30_10_14_R2_B_scaffold_995_18
SCNPILOT_EXPT_500_BF_STEP10_Armatimonadetes_55_34, SCNPILOT_EXPT_500_BF_STEP10_Armatimonadetes_55_34, SCNPILOT_EXPT_500_BF_STEP10_Armatimonadetes_55_34, SCNPILOT_EXPT_500_BF_STEP10_Armatimonadetes_55_34, SCNPILOT_EXPT_500_BF_STEP10_Armatimonadetes_55_34, Bacteria

Not on your lists

comp(21574..23088)
DNA (1515bp) protein (505aa)
metallophosphoesterase n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C3880
metallophosphoesterase
Metallophosphoesterase {ECO:0000313|EMBL:ADV62493.1}; Flags: Precursor;; TaxID=575540 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Isosphaera.;" source="Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B).;"
SCN18_30_10_14_R2_B_scaffold_995_19
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

23328..24767
DNA (1440bp) protein (480aa)
NADH-dependent dehydrogenase n=1 Tax=uncultured planctomycete RepID=H5SFQ4_9BACT
NADH-dependent dehydrogenase {ECO:0000313|EMBL:BAL54990.1}; TaxID=120965 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; environmental samples.;" source="uncultured planctomycete.;"
dehydrogenase
SCN18_30_10_14_R2_B_scaffold_995_20
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

24838..25314
DNA (477bp) protein (159aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI0002EB95A0
sigma-70 family RNA polymerase sigma factor
Tax=RBG_13_Planctomycetes_63_9_curated
SCN18_30_10_14_R2_B_scaffold_995_21
unknown

Not on your lists

25311..25706
DNA (396bp) protein (132aa)

This feature has no annotations

SCN18_30_10_14_R2_B_scaffold_995_22
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

25740..27203
DNA (1464bp) protein (488aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI00031975E1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA25338.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
SCN18_30_10_14_R2_B_scaffold_995_23
unknown

Not on your lists

comp(27210..27392)
DNA (183bp) protein (61aa)

This feature has no annotations

SCN18_30_10_14_R2_B_scaffold_995_24
SCNPILOT_CONT_1000_P_Pseudonocardia_72_23, SCNPILOT_CONT_1000_P_Pseudonocardia_72_23, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27454..27627
DNA (174bp) protein (58aa)
Transposase n=1 Tax=Saccharothrix espanaensis (strain ATCC 51144 / DSM 44229 / JCM 9112 / NBRC 15066 / NRRL 15764) RepID=K0K3R0_SACES
Transposase
Transposase {ECO:0000313|EMBL:CCH32956.1}; TaxID=1179773 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharothrix.;" source="Saccharothrix espanaensis (strain ATCC 51144 / DSM 44229 / JCM 9112 /; NBRC 15066 / NRRL 15764).;"
SCN18_30_10_14_R2_B_scaffold_995_25
SCNpilot_P_inoc_Acidovorax_64_34, SCNpilot_P_inoc_Acidovorax_64_34, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27943..28362)
DNA (420bp) protein (140aa)
terminase n=1 Tax=Zavarzinella formosa RepID=UPI00031C2E37
Uncharacterized protein {ECO:0000313|EMBL:EJP77104.1}; TaxID=1183154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia Ab55555.;"
phage terminase
SCN18_30_10_14_R2_B_scaffold_995_26
SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, Bacteria

Not on your lists

comp(28387..28752)
DNA (366bp) protein (122aa)
Uncharacterized protein n=2 Tax=Octadecabacter arcticus 238 RepID=M9RTJ6_9RHOB id=5225920 bin=16ft_combo_ws3_JS1 species=Octadecabacter arcticus genus=Octadecabacter taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
transposase and inactivated derivatives
Tax=RBG_16_RIF_WS3X_71_46_curated
Displaying 26 items

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