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SCN18_30_10_14_R2_B_scaffold_1085

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R2_B_scaffold_1085_1
unknown

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1..378
DNA (378bp) protein (126aa)

This feature has no annotations

SCN18_30_10_14_R2_B_scaffold_1085_2
SCNPILOT_CONT_750_P_Burkholderiales_64_62, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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532..2118
DNA (1587bp) protein (529aa)
dolichol-phosphate mannosyltransferase-membrane bound sugar transferase involved in LPS biosynthesis (EC:2.4.1.83)
probable dolichol-phosphate mannosyltransferase-putative membrane bound sugar transferase involved in LPS biosynthesis n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C5298
Glycosyl transferase family protein {ECO:0000313|EMBL:EMI16504.1}; TaxID=1265738 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Rhodopirellula.;" source="Rhodopirellula maiorica SM1.;"
SCN18_30_10_14_R2_B_scaffold_1085_3
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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comp(2136..2564)
DNA (429bp) protein (143aa)
hypothetical protein n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C36B0
Uncharacterized protein {ECO:0000313|EMBL:EEF61362.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
SCN18_30_10_14_R2_B_scaffold_1085_4
Rhodanobacter denitrificans_SCNPILOT_SOLID_1_TRIM150_Rhodanobacter_69_165, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2587..3612)
DNA (1026bp) protein (342aa)
general secretion pathway protein F-putative pilus protein n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C5299
type II secretion system F domain protein
Type II secretion system F domain protein {ECO:0000313|EMBL:ADY58249.1}; TaxID=756272 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Rubinisphaera.;" source="Rubinisphaera brasiliensis (strain ATCC 49424 / DSM 5305 / JCM 21570 /; NBRC 103401 / IFAM 1448) (Planctomyces brasiliensis).;"
SCN18_30_10_14_R2_B_scaffold_1085_5
SCNPILOT_CONT_750_BF_Acidobacteria_60_9_7, SCNPILOT_CONT_750_BF_Acidobacteria_60_9_7, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

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3713..4069
DNA (357bp) protein (119aa)
hypothetical protein n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C529A
Marine sediment metagenome DNA, contig: S01H1_S22954 {ECO:0000313|EMBL:GAG15122.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
SCN18_30_10_14_R2_B_scaffold_1085_6
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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4066..4743
DNA (678bp) protein (226aa)
probable ATP-dependent protease La 1 n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C4E42
peptidase S16 lon domain-containing protein
Tax=RBG_13_Planctomycetes_63_9_curated
SCN18_30_10_14_R2_B_scaffold_1085_7
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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4819..5340
DNA (522bp) protein (174aa)
Probable thiol peroxidase {ECO:0000256|HAMAP-Rule:MF_00269}; EC=1.11.1.- {ECO:0000256|HAMAP-Rule:MF_00269};; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
lipid hydroperoxide peroxidase n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C5063
peroxiredoxin
SCN18_30_10_14_R2_B_scaffold_1085_8
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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comp(5441..6538)
DNA (1098bp) protein (366aa)
Oxidoreductase-like protein n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C470F
dehydrogenase
Putative dehydrogenase {ECO:0000313|EMBL:AGA29733.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
SCN18_30_10_14_R2_B_scaffold_1085_9
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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comp(6563..7462)
DNA (900bp) protein (300aa)
UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase {ECO:0000256|SAAS:SAAS00041388}; EC=3.5.1.- {ECO:0000256|SAAS:SAAS00041386};; EC=4.2.1.59 {ECO:0000256|SAAS:SAAS00064862};; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ {ECO:0000256|SAAS:SAAS00064869}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
UDP-3-O- n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C470E
beta-hydroxyacyl-(ACP) dehydratase FabZ
SCN18_30_10_14_R2_B_scaffold_1085_10
Xiphophorus maculatus, Xiphophorus, Cyprinodontiformes, Neopterygii, Chordata, Metazoa

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comp(7535..8305)
DNA (771bp) protein (257aa)
hypothetical protein n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C470D
Uncharacterized protein {ECO:0000313|Ensembl:ENSXMAP00000001016}; TaxID=8083 species="Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus.;" source="Xiphophorus maculatus (Southern platyfish) (Platypoecilus maculatus).;"
Conserved exported protein of unknown function, proline, glycine, valine-rich
SCN18_30_10_14_R2_B_scaffold_1085_11
Blastopirellula marina, Blastopirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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8620..9081
DNA (462bp) protein (154aa)
Uncharacterized protein n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZSF9_9PLAN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EAQ80619.1}; TaxID=314230 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Blastopirellula.;" source="Blastopirellula marina DSM 3645.;"
SCN18_30_10_14_R2_B_scaffold_1085_12
CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, Acidobacteria

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9148..9591
DNA (444bp) protein (148aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI0002D27FBC
Uncharacterized protein {ECO:0000313|EMBL:CCZ69368.1}; TaxID=1262747 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides sp. CAG:702.;"
tellurite resistance protein TerB
SCN18_30_10_14_R2_B_scaffold_1085_13
CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, Acidobacteria

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9711..10154
DNA (444bp) protein (148aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI0002D27FBC
hypothetical protein
Tellurite resistance protein TerB {ECO:0000313|EMBL:KIF13723.1}; TaxID=1574475 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Aphanocapsa.;" source="Aphanocapsa montana BDHKU210001.;"
SCN18_30_10_14_R2_B_scaffold_1085_14
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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10241..12361
DNA (2121bp) protein (707aa)
hypothetical protein n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C3A46
dipeptidyl-peptidase 7
Tax=RBG_13_Planctomycetes_62_9_curated
SCN18_30_10_14_R2_B_scaffold_1085_15
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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comp(13141..13767)
DNA (627bp) protein (209aa)
LexA repressor {ECO:0000256|HAMAP-Rule:MF_00015, ECO:0000256|SAAS:SAAS00008101}; EC=3.4.21.88 {ECO:0000256|HAMAP-Rule:MF_00015, ECO:0000256|SAAS:SAAS00008054};; TaxID=344747 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Gimesia.;" source="Gimesia maris DSM 8797.;"
SOS-response transcriptional repressor, LexA (EC:3.4.21.88)
LexA repressor n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C36BD
SCN18_30_10_14_R2_B_scaffold_1085_16
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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13953..15101
DNA (1149bp) protein (383aa)
acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C5688
acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase
Tax=RBG_13_Spirochaetes_68_11_curated
SCN18_30_10_14_R2_B_scaffold_1085_17
unknown

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15249..15398
DNA (150bp) protein (50aa)

This feature has no annotations

SCN18_30_10_14_R2_B_scaffold_1085_18
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

15468..16163
DNA (696bp) protein (232aa)
transcriptional regulators, TraR/DksA family protein n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C3CE0
DnaK suppressor protein
DnaK suppressor protein {ECO:0000313|EMBL:AGA30193.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
SCN18_30_10_14_R2_B_scaffold_1085_19
SCNPILOT_CONT_1000_P_Pseudonocardia_72_23, SCNPILOT_CONT_1000_P_Pseudonocardia_72_23, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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16259..18775
DNA (2517bp) protein (839aa)
pyruvate phosphate dikinase, PEP/pyruvate binding domain protein n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C541D
Pyruvate phosphate dikinase PEP/pyruvate-binding protein {ECO:0000313|EMBL:EMI42619.1}; TaxID=595460 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Rhodopirellula.;" source="Rhodopirellula sp. SWK7.;"
pyruvate phosphate dikinase PEP/pyruvate-binding protein
SCN18_30_10_14_R2_B_scaffold_1085_20
SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, Bacteria

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comp(18744..21293)
DNA (2550bp) protein (850aa)
pheT; phenylalanyl-tRNA synthetase beta chain (EC:6.1.1.20)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI0002D2B663
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
SCN18_30_10_14_R2_B_scaffold_1085_21
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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21549..21881
DNA (333bp) protein (111aa)
30S ribosomal protein S10 n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C4524
30S ribosomal protein S10P
30S ribosomal protein S10 {ECO:0000256|HAMAP-Rule:MF_00508}; TaxID=756272 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Rubinisphaera.;" source="Rubinisphaera brasiliensis (strain ATCC 49424 / DSM 5305 / JCM 21570 /; NBRC 103401 / IFAM 1448) (Planctomyces brasiliensis).;"
SCN18_30_10_14_R2_B_scaffold_1085_22
SCNpilot_BF_INOC_Clostridium_37_18, SCNpilot_BF_INOC_Clostridium_37_18, Clostridiales, Clostridia, Firmicutes, Bacteria

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22096..22932
DNA (837bp) protein (279aa)
50S ribosomal protein L4 n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C4523
50S ribosomal protein L4
50S ribosomal protein L4 {ECO:0000256|HAMAP-Rule:MF_01328}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
SCN18_30_10_14_R2_B_scaffold_1085_23
SCNPILOT_SOLID_1_TRIM150_Gemmatimonadetes_66_6, SCNPILOT_SOLID_1_TRIM150_Gemmatimonadetes_66_6, SCNPILOT_SOLID_1_TRIM150_Gemmatimonadetes_66_6, SCNPILOT_SOLID_1_TRIM150_Gemmatimonadetes_66_6, Gemmatimonadetes, Bacteria

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22978..23343
DNA (366bp) protein (122aa)
50S ribosomal protein L23 n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C4522
50S ribosomal protein L23
50S ribosomal protein L23 {ECO:0000256|HAMAP-Rule:MF_01369}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
SCN18_30_10_14_R2_B_scaffold_1085_24
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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23467..24342
DNA (876bp) protein (292aa)
50S ribosomal protein L2 n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C4521
50S ribosomal protein L2 {ECO:0000256|HAMAP-Rule:MF_01320}; TaxID=344747 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Gimesia.;" source="Gimesia maris DSM 8797.;"
50S ribosomal protein L2
SCN18_30_10_14_R2_B_scaffold_1085_25
Nitrosospira multiformis_SCNPILOT_SOLID_1_TRIM150_Nitrosospira_54_27, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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24496..24771
DNA (276bp) protein (92aa)
30S ribosomal protein S19 n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C4520
30S ribosomal protein S19
30S ribosomal protein S19 {ECO:0000256|HAMAP-Rule:MF_00531}; Flags: Precursor;; TaxID=575540 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Isosphaera.;" source="Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B).;"
SCN18_30_10_14_R2_B_scaffold_1085_26
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists


24861..25202
DNA (342bp) protein (114aa)
50S ribosomal protein L22 n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C451F
Marine sediment metagenome DNA, contig: S01H1_L00396 {ECO:0000313|EMBL:GAF82969.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
50S ribosomal protein L22
SCN18_30_10_14_R2_B_scaffold_1085_27
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists


25317..26069
DNA (753bp) protein (251aa)
30S ribosomal protein S3 n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C451E
30S ribosomal protein S3
30S ribosomal protein S3 {ECO:0000256|HAMAP-Rule:MF_01309}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
SCN18_30_10_14_R2_B_scaffold_1085_28
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists


26106..26372
DNA (267bp) protein (89aa)
50S ribosomal protein L16 n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C451D
Marine sediment metagenome DNA, contig: S01H1_L04958 {ECO:0000313|EMBL:GAF73592.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
50S ribosomal protein L16
Displaying 28 items

View Taxonomy