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SCN18_30_10_14_R2_B_scaffold_3144

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R2_B_scaffold_3144_1
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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1..738
DNA (738bp) protein (246aa)
SCN18_30_10_14_R2_B_scaffold_3144_2
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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comp(626..1300)
DNA (675bp) protein (225aa)
Response regulator receiver domain protein n=1 Tax=Planctomyces maris DSM 8797 RepID=A6BYP5_9PLAN
Response regulator receiver domain protein {ECO:0000313|EMBL:EDL62190.1}; TaxID=344747 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Gimesia.;" source="Gimesia maris DSM 8797.;"
two component LuxR family transcriptional regulator
SCN18_30_10_14_R2_B_scaffold_3144_3
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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comp(1272..2726)
DNA (1455bp) protein (485aa)
Multi-sensor signal transduction histidine kinase id=3544119 bin=GWC2_Planctomycetes_45_44 species=Spirochaeta smaragdinae genus=Spirochaeta taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWC2_Planctomycetes_45_44 organism_group=Planctomycetes organism_desc=Novel; good
fixL; Sensor protein fixL
Tax=GWF2_Elusimicrobia_62_30_curated
SCN18_30_10_14_R2_B_scaffold_3144_4
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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3362..3877
DNA (516bp) protein (172aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; Flags: Precursor;; TaxID=1300915 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter.;" source="Anaeromyxobacter sp. PSR-1.;"
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI00030437D9
periplasmic sensor hybrid histidine kinase
SCN18_30_10_14_R2_B_scaffold_3144_5
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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4064..4495
DNA (432bp) protein (144aa)
Response regulator with putative antiterminator output domain n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DDD4_SINAD
response regulator with antiterminator output domain
Response regulator with putative antiterminator output domain {ECO:0000313|EMBL:AGA26848.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
SCN18_30_10_14_R2_B_scaffold_3144_6
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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comp(4927..5367)
DNA (441bp) protein (147aa)
Matrixin n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DHV3_SINAD
Matrixin
Matrixin {ECO:0000313|EMBL:AGA28954.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
SCN18_30_10_14_R2_B_scaffold_3144_7
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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comp(5423..5623)
DNA (201bp) protein (67aa)
SCN18_30_10_14_R2_B_scaffold_3144_8
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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6329..6910
DNA (582bp) protein (194aa)
Uncharacterized protein {ECO:0000313|EMBL:KKL12186.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
SCN18_30_10_14_R2_B_scaffold_3144_9
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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6907..7161
DNA (255bp) protein (85aa)
SCN18_30_10_14_R2_B_scaffold_3144_10
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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comp(7255..7395)
DNA (141bp) protein (47aa)
transposase n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C3E20
SCN18_30_10_14_R2_B_scaffold_3144_11
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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7548..8000
DNA (453bp) protein (151aa)
Histidine kinase,Response regulator receiver domain protein,histidine kinase n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DT81_SINAD
histidine kinase
Histidine kinase,Response regulator receiver domain protein,histidine kinase {ECO:0000313|EMBL:AGA31576.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
SCN18_30_10_14_R2_B_scaffold_3144_12
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8018..9460
DNA (1443bp) protein (481aa)
Uncharacterized protein n=1 Tax=Rhodopirellula maiorica SM1 RepID=M5S757_9PLAN
Uncharacterized protein {ECO:0000313|EMBL:EMI22024.1}; TaxID=1265738 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Rhodopirellula.;" source="Rhodopirellula maiorica SM1.;"
hypothetical protein
SCN18_30_10_14_R2_B_scaffold_3144_13
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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comp(9477..10352)
DNA (876bp) protein (292aa)
hypothetical protein n=1 Tax=Singulisphaera acidiphila RepID=UPI00037F51C8
PAS domain-containing protein
PAS domain S-box {ECO:0000313|EMBL:AGA31577.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
Displaying 13 items

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