ggKbase home page

SCN18_30_10_14_R2_B_Bacteria_71_11

In projects: SCN18_30_10_14_R2_B  |  scn18_genomes  |  SCN_ET-SeqDB_Dereplicated  |  SCN_92

Consensus taxonomy: Bacteria

Description

No idea what to make of this bin SCN18_30_10_14_R2_B_concoct_074. May be mixed components. 16S rRNA in bin places with Planctomycetes Gemmataceae

Displaying items 651-700 of 766 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCN18_30_10_14_R2_B_scaffold_21577
Species: Chamaesiphon minutus (50%)
2 2262 bp 73.83 11.67 84.35
SCN18_30_10_14_R2_B_scaffold_24451
Species: RifOxyA12_full_Lentisphaerae_48_11_curated (50%)
2 2049 bp 72.38 10.91 83.16
SCN18_30_10_14_R2_B_scaffold_24707
Species: SCNPILOT_EXPT_750_BF_Xanthomonadales_66_150 (50%)
2 2031 bp 74.84 9.82 67.21
SCN18_30_10_14_R2_B_scaffold_15227
Species: SCN_Comamonas_36x (50%)
2 2962 bp 74.92 10.53 94.40
SCN18_30_10_14_R2_B_scaffold_56674
Species: Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9 (50%)
2 1058 bp 71.36 6.95 88.19
SCN18_30_10_14_R2_B_scaffold_22387
Species: Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9 (50%)
2 2196 bp 77.60 7.86 98.50
SCN18_30_10_14_R2_B_scaffold_24213
Species: SCNPILOT_EXPT_750_BF_Nitrosomonadales_56_52 (50%)
2 2065 bp 74.92 11.99 77.43
SCN18_30_10_14_R2_B_scaffold_14439
Species: Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x (50%)
2 3090 bp 74.14 9.22 91.36
SCN18_30_10_14_R2_B_scaffold_58224
Species: Corallococcus coralloides (50%)
2 1035 bp 73.62 8.70 93.04
SCN18_30_10_14_R2_B_scaffold_6579
Species: Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x (100%)
2 5747 bp 72.39 11.54 98.35
SCN18_30_10_14_R2_B_scaffold_25801
Species: SCNPILOT_CONT_1000_BF_Chloroflexi_54_27 (50%)
2 1965 bp 71.20 10.46 70.99
SCN18_30_10_14_R2_B_scaffold_19561
Species: Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9 (50%)
2 2439 bp 74.21 8.43 92.25
SCN18_30_10_14_R2_B_scaffold_60794
Species: SCNPILOT_EXPT_500_BF_STEP10_Armatimonadetes_55_34 (50%)
2 1000 bp 71.40 10.20 77.10
SCN18_30_10_14_R2_B_scaffold_13328
Species: Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x (100%)
2 3300 bp 76.91 8.91 100.00
SCN18_30_10_14_R2_B_scaffold_48425
Species: SCNPILOT_EXPT_750_BF_Nitrosomonadales_56_52 (50%)
2 1201 bp 72.86 7.49 99.67
SCN18_30_10_14_R2_B_scaffold_11704
Species: SCNPILOT_CONT_1000_BF_Chloroflexi_54_27 (50%)
2 3660 bp 71.72 9.26 89.92
SCN18_30_10_14_R2_B_scaffold_11198
Species: Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x (100%)
2 3786 bp 79.48 7.96 98.34
SCN18_30_10_14_R2_B_scaffold_24770
Species: Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9 (50%)
2 3522 bp 71.35 11.46 100.00
SCN18_30_10_14_R2_B_scaffold_12371
Species: Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x (100%)
2 3505 bp 72.55 10.23 70.78
SCN18_30_10_14_R2_B_scaffold_41444
Species: Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9 (50%)
2 1359 bp 72.04 12.80 81.46
SCN18_30_10_14_R2_B_scaffold_12118
Species: Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x (100%)
2 3563 bp 75.58 10.10 99.35
SCN18_30_10_14_R2_B_scaffold_29966
Species: Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9 (100%)
2 1750 bp 69.31 8.74 87.26
SCN18_30_10_14_R2_B_scaffold_19090
Species: Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9 (100%)
2 2484 bp 72.91 8.39 92.39
SCN18_30_10_14_R2_B_scaffold_34507
Species: SCN_Comamonadaceae_20x (50%)
2 1571 bp 71.55 7.16 72.95
SCN18_30_10_14_R2_B_scaffold_42933
Species: SCNPILOT_CONT_1000_P_Pseudonocardia_72_23 (50%)
2 2779 bp 76.07 9.23 92.62
SCN18_30_10_14_R2_B_scaffold_18263
Species: SCNPILOT_SOLID_1_TRIM150_Gemmatimonadetes_66_6 (50%)
2 2572 bp 77.22 9.86 87.95
SCN18_30_10_14_R2_B_scaffold_10441
Species: Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x (100%)
2 3997 bp 72.80 10.55 88.64
SCN18_30_10_14_R2_B_scaffold_50772
Species: Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9 (50%)
2 1156 bp 68.60 8.04 79.15
SCN18_30_10_14_R2_B_scaffold_23929
Species: RBG_16_Acidobacteria_64_8_curated (50%)
2 2086 bp 75.70 9.56 89.45
SCN18_30_10_14_R2_B_scaffold_13633
Species: SCNPILOT_SOLID_1_TRIM150_Sphingobacteriales_42_11 (50%)
2 3242 bp 71.84 8.61 99.29
SCN18_30_10_14_R2_B_scaffold_43717
Species: Isosphaera pallida (100%)
2 1302 bp 75.50 8.64 89.63
SCN18_30_10_14_R2_B_scaffold_18537
Species: Streptomyces roseochromogenus (50%)
2 2540 bp 75.35 9.86 97.32
SCN18_30_10_14_R2_B_scaffold_18538
Species: SCNPILOT_CONT_750_BF_Acidobacteria_60_9_7 (50%)
2 2540 bp 71.18 11.40 95.32
SCN18_30_10_14_R2_B_scaffold_13133
Species: Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x (100%)
2 3337 bp 76.60 9.84 99.07
SCN18_30_10_14_R2_B_scaffold_42446
Species: Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9 (50%)
2 1332 bp 75.00 12.16 73.87
SCN18_30_10_14_R2_B_scaffold_17383
Species: Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x (100%)
2 2670 bp 75.39 9.44 99.89
SCN18_30_10_14_R2_B_scaffold_12407
Species: SCNpilot_BF_INOC_Bordetella_67_10 (100%)
2 3496 bp 69.28 12.66 94.91
SCN18_30_10_14_R2_B_scaffold_43218
Species: Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9 (50%)
2 1314 bp 58.60 17.01 40.41
SCN18_30_10_14_R2_B_scaffold_8315
Species: Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x (100%)
2 4784 bp 80.25 8.65 86.35
SCN18_30_10_14_R2_B_scaffold_21428
Species: SCNPILOT_SOLID_1_TRIM150_Rhodanobacter_66_29 (50%)
2 2275 bp 73.58 9.96 94.02
SCN18_30_10_14_R2_B_scaffold_4486
Species: Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x (100%)
2 10903 bp 70.21 10.70 77.79
SCN18_30_10_14_R2_B_scaffold_11263
Species: CN-SCN_Rubrivivax_131x (50%)
2 3770 bp 74.77 9.91 100.03
SCN18_30_10_14_R2_B_scaffold_13920
Species: Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x (100%)
2 3189 bp 73.97 9.27 92.00
SCN18_30_10_14_R2_B_scaffold_18310
Species: SCNPILOT_CONT_500_BF_Rhizobiales_64_17 (50%)
2 2566 bp 66.99 12.39 74.01
SCN18_30_10_14_R2_B_scaffold_60636
Species: CN-SCN_Mesorhizobium_20x (50%)
2 1002 bp 71.96 6.14 98.80
SCN18_30_10_14_R2_B_scaffold_13421
Species: Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9 (50%)
2 3285 bp 76.41 11.60 80.27
SCN18_30_10_14_R2_B_scaffold_17685
Species: Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9 (100%)
2 2635 bp 71.76 11.67 93.93
SCN18_30_10_14_R2_B_scaffold_19424
Species: Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9 (50%)
2 3538 bp 70.24 10.43 68.85
SCN18_30_10_14_R2_B_scaffold_50077
Species: SCNPILOT_EXPT_750_BF_Xanthomonadales_66_150 (50%)
2 1169 bp 73.74 5.13 82.38
SCN18_30_10_14_R2_B_scaffold_20150
Species: SCNPILOT_CONT_750_BF_Rhodospirillales_68_10 (50%)
2 2386 bp 74.60 10.37 95.18
Displaying items 651-700 of 766 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.