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SCN18_30_10_14_R2_B_scaffold_1710

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R2_B_scaffold_1710_1
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

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1..759
DNA (759bp) protein (253aa)
Conjugal transfer ATPase TrbE n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0BH40_9RHIZ
conjugal transfer ATPase TrbE
Conjugal transfer ATPase TrbE {ECO:0000313|EMBL:AGK59761.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
SCN18_30_10_14_R2_B_scaffold_1710_2
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

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756..1499
DNA (744bp) protein (248aa)
Conjugal transfer protein TrbJ n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0BHX1_9RHIZ
conjugal transfer protein TrbJ
Conjugal transfer protein TrbJ {ECO:0000313|EMBL:AGK59760.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
SCN18_30_10_14_R2_B_scaffold_1710_3
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

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1499..1813
DNA (315bp) protein (105aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B800_9RHIZ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGK59759.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
SCN18_30_10_14_R2_B_scaffold_1710_4
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

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1819..3084
DNA (1266bp) protein (422aa)
P-type conjugative transfer protein TrbL n=1 Tax=Afipia sp. 1NLS2 RepID=D6V515_9BRAD
P-type conjugative transfer protein TrbL {ECO:0000313|EMBL:EFI53045.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
conjugal transfer protein TrbL
SCN18_30_10_14_R2_B_scaffold_1710_5
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3088..3768
DNA (681bp) protein (227aa)
Conjugal transfer protein TrbF n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0BBW1_9RHIZ
conjugal transfer protein TrbF
Conjugal transfer protein TrbF {ECO:0000313|EMBL:AGK59757.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
SCN18_30_10_14_R2_B_scaffold_1710_6
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3768..4754
DNA (987bp) protein (329aa)
Conjugal transfer protein TrbG n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0BH35_9RHIZ
conjugal transfer protein TrbG
Conjugal transfer protein TrbG {ECO:0000313|EMBL:AGK59756.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
SCN18_30_10_14_R2_B_scaffold_1710_7
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

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4751..5923
DNA (1173bp) protein (391aa)
Conjugation TrbI family protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V518_9BRAD
Conjugation TrbI family protein {ECO:0000313|EMBL:EFI53048.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
conjugal transfer protein TrbI
SCN18_30_10_14_R2_B_scaffold_1710_8
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5933..6202
DNA (270bp) protein (90aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V519_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EFI53049.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
hypothetical protein
SCN18_30_10_14_R2_B_scaffold_1710_9
SCNPILOT_EXPT_750_BF_Rhodanobacter_67_8_fragment, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6185..7189)
DNA (1005bp) protein (335aa)
Transcriptional regulator n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B9Q4_9RHIZ
transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:AGK59753.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
SCN18_30_10_14_R2_B_scaffold_1710_10
SCNPILOT_EXPT_750_BF_Rhodanobacter_67_8_fragment, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7226..7894)
DNA (669bp) protein (223aa)
Acyl-homoserine-lactone synthase {ECO:0000256|RuleBase:RU361135}; EC=2.3.1.184 {ECO:0000256|RuleBase:RU361135};; Autoinducer synthesis protein {ECO:0000256|RuleBase:RU361135}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
Acyl-homoserine-lactone synthase n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0BBV6_9RHIZ
acyl-homoserine-lactone synthase
SCN18_30_10_14_R2_B_scaffold_1710_11
SCNPILOT_EXPT_750_BF_Rhodanobacter_67_8_fragment, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7990..8712)
DNA (723bp) protein (241aa)
Autoinducer-binding domain-containing protein n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0BH31_9RHIZ
autoinducer-binding domain-containing protein
Autoinducer-binding domain-containing protein {ECO:0000313|EMBL:AGK59751.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
SCN18_30_10_14_R2_B_scaffold_1710_12
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8986..9792)
DNA (807bp) protein (269aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V539_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EFI53069.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
hypothetical protein
SCN18_30_10_14_R2_B_scaffold_1710_13
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9773..10678)
DNA (906bp) protein (302aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B9D7_9RHIZ
hypothetical protein
UPF0276 protein HYPDE_27308 {ECO:0000256|HAMAP-Rule:MF_00697}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
SCN18_30_10_14_R2_B_scaffold_1710_14
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10787..11089)
DNA (303bp) protein (101aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V470_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EFI52750.1}; Flags: Precursor;; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
hypothetical protein
SCN18_30_10_14_R2_B_scaffold_1710_15
unknown

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11336..11503
DNA (168bp) protein (56aa)

This feature has no annotations

SCN18_30_10_14_R2_B_scaffold_1710_16
scnpilot_dereplicated_Plasmid_Rhizobiales_2, scnpilot_dereplicated_Plasmid_Rhizobiales_2, scnpilot_dereplicated_Plasmid_Rhizobiales_2, scnpilot_dereplicated_Plasmid_Rhizobiales_2, scnpilot_dereplicated_Plasmid_Rhizobiales_2, Plasmid-like

Not on your lists

comp(11695..14148)
DNA (2454bp) protein (818aa)
Heavy metal translocating P-type ATPase n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B4I3_9RHIZ
Heavy metal translocating P-type ATPase {ECO:0000313|EMBL:AGK57127.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
heavy metal translocating P-type ATPase
SCN18_30_10_14_R2_B_scaffold_1710_17
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14227..14445)
DNA (219bp) protein (73aa)
Heavy metal transport/detoxification protein n=1 Tax=Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / AIU301) RepID=F0J2L5_ACIMA
heavy metal transport/detoxification protein
Heavy metal transport/detoxification protein {ECO:0000313|EMBL:BAJ81959.1}; TaxID=926570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / NBRC 100883 /; AIU301).;"
SCN18_30_10_14_R2_B_scaffold_1710_18
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14442..14963)
DNA (522bp) protein (174aa)
Transcriptional regulator, MerR family n=1 Tax=Afipia sp. 1NLS2 RepID=D6V506_9BRAD
DNA-binding transcriptional activator of copper-responsive regulon genes
Transcriptional regulator, MerR family {ECO:0000313|EMBL:EFI53036.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
SCN18_30_10_14_R2_B_scaffold_1710_19
unknown

Not on your lists

comp(15082..15336)
DNA (255bp) protein (85aa)

This feature has no annotations

SCN18_30_10_14_R2_B_scaffold_1710_20
SCNPILOT_SOLID2_TRIM150_Rhizobiales_63_17, SCNPILOT_SOLID2_TRIM150_Rhizobiales_63_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15366..16169)
DNA (804bp) protein (268aa)
Protein-disulfide isomerase n=1 Tax=Bradyrhizobium sp. WSM1253 RepID=I2QST2_9BRAD
Protein-disulfide isomerase {ECO:0000313|EMBL:EIG62838.1}; TaxID=319003 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM1253.;"
Protein-disulfide isomerase
SCN18_30_10_14_R2_B_scaffold_1710_21
SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16180..17127)
DNA (948bp) protein (316aa)
Cytochrome oxidase assembly factor n=1 Tax=Bradyrhizobium sp. WSM1253 RepID=I2QST0_9BRAD
Cytochrome oxidase assembly factor {ECO:0000313|EMBL:EIG62836.1}; Flags: Precursor;; TaxID=319003 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM1253.;"
cytochrome c oxidase assembly protein CtaG/Cox11
SCN18_30_10_14_R2_B_scaffold_1710_22
SCNPILOT_CONT_300_BF_Rhizobiales_mobile_60_55, SCNPILOT_CONT_300_BF_Rhizobiales_mobile_60_55, SCNPILOT_CONT_300_BF_Rhizobiales_mobile_60_55, SCNPILOT_CONT_300_BF_Rhizobiales_mobile_60_55, SCNPILOT_CONT_300_BF_Rhizobiales_mobile_60_55, Mobile_element

Not on your lists

comp(17185..17310)
DNA (126bp) protein (42aa)
Transcriptional regulator, MerR family n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QFJ2_NITHX
Bradyrhizobium elkanii strain UASWS1015 Contig140, whole genome shotgun sequence {ECO:0000313|EMBL:KIU53547.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
MerR family transcriptional regulator
Displaying 22 items

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