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SCN18_30_10_14_R2_B_scaffold_296

Search features with annotation key words

Displaying items 1-30 of 128 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R2_B_scaffold_296_1
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..186
DNA (186bp) protein (62aa)
SCN18_30_10_14_R2_B_scaffold_296_2
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

347..1501
DNA (1155bp) protein (385aa)
Transcriptional regulator involved in nitrogen fixation n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7Z4Y5_AZOL4
ntrX; transcriptional regulator involved in nitrogen fixation
Transcriptional regulator involved in nitrogen fixation {ECO:0000313|EMBL:CBS86654.1}; TaxID=862719 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum lipoferum (strain 4B).;"
SCN18_30_10_14_R2_B_scaffold_296_3
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1519..2406
DNA (888bp) protein (296aa)
D-amino acid aminotransferase (EC:2.6.1.21)
D-amino acid aminotransferase {ECO:0000313|EMBL:AHB48810.1}; EC=2.6.1.21 {ECO:0000313|EMBL:AHB48810.1};; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
D-amino acid aminotransferase n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SFL3_9RHIZ
SCN18_30_10_14_R2_B_scaffold_296_4
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2506..2751
DNA (246bp) protein (82aa)
hypothetical protein n=1 Tax=Kordiimonas gwangyangensis RepID=UPI00036B5510
RNA-binding protein Hfq {ECO:0000256|HAMAP-Rule:MF_00436, ECO:0000256|SAAS:SAAS00067493}; TaxID=1605283 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium U9-1i.;"
hfq; RNA-binding protein Hfq
SCN18_30_10_14_R2_B_scaffold_296_5
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2754..4079
DNA (1326bp) protein (442aa)
GTPase HflX n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D6ZYG8_STAND
GTP-binding proten HflX
GTPase HflX {ECO:0000256|HAMAP-Rule:MF_00900}; GTP-binding protein HflX {ECO:0000256|HAMAP-Rule:MF_00900}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
SCN18_30_10_14_R2_B_scaffold_296_6
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4122..4958)
DNA (837bp) protein (279aa)
MazG family protein n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1B1X5_PARDP
mazG; nucleoside triphosphate pyrophosphohydrolase
MazG family protein {ECO:0000313|EMBL:ABL69519.1}; TaxID=318586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus denitrificans (strain Pd 1222).;"
SCN18_30_10_14_R2_B_scaffold_296_7
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5106..5759)
DNA (654bp) protein (218aa)
SCN18_30_10_14_R2_B_scaffold_296_8
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5939..6208)
DNA (270bp) protein (90aa)
SCN18_30_10_14_R2_B_scaffold_296_9
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6328..7260)
DNA (933bp) protein (311aa)
ISSpo8, transposase n=1 Tax=Methylocystis sp. (strain SC2) RepID=J7Q561_METSZ
ISSpo8, transposase
ISSpo8, transposase {ECO:0000313|EMBL:CCJ08544.1}; TaxID=187303 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis sp. (strain SC2).;"
SCN18_30_10_14_R2_B_scaffold_296_10
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7375..7593)
DNA (219bp) protein (73aa)
SCN18_30_10_14_R2_B_scaffold_296_11
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7740..7928
DNA (189bp) protein (63aa)
SCN18_30_10_14_R2_B_scaffold_296_12
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7997..8743)
DNA (747bp) protein (249aa)
hypothetical protein n=1 Tax=Burkholderia thailandensis RepID=UPI0003729EF9
Uncharacterized protein {ECO:0000313|EMBL:KEZ06305.1}; TaxID=1506588 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. MSh2.;"
putative SAM-dependent methyltransferase
SCN18_30_10_14_R2_B_scaffold_296_13
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8765..8956)
DNA (192bp) protein (64aa)
SCN18_30_10_14_R2_B_scaffold_296_14
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8983..9567)
DNA (585bp) protein (195aa)
TPR domain protein n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4R8V9_PHEZH
TPR domain-containing protein
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_70_10_curated
SCN18_30_10_14_R2_B_scaffold_296_15
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9564..10172)
DNA (609bp) protein (203aa)
Tetratricopeptide TPR_2 repeat protein n=1 Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=E3FWU7_STIAD
hypothetical protein
Tetratricopeptide TPR_2 repeat protein {ECO:0000313|EMBL:ADO69810.1}; TaxID=378806 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Stigmatella.;" source="Stigmatella aurantiaca (strain DW4/3-1).;"
SCN18_30_10_14_R2_B_scaffold_296_16
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10244..11074)
DNA (831bp) protein (277aa)
Uncharacterized protein n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RAW2_PHEZH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACG78013.1}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacterium zucineum (strain HLK1).;"
SCN18_30_10_14_R2_B_scaffold_296_17
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11071..11859)
DNA (789bp) protein (263aa)
TatD family hydrolase n=1 Tax=Oceanibaculum indicum P24 RepID=K2K067_9PROT
LuxR family transcriptional regulator {ECO:0000313|EMBL:KJV08526.1}; TaxID=552518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Elstera.;" source="Elstera litoralis.;"
TatD family hydrolase
SCN18_30_10_14_R2_B_scaffold_296_18
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11856..12914)
DNA (1059bp) protein (353aa)
holB; putative DNA polymerase III subunit delta' (EC:2.7.7.7)
Putative DNA polymerase III subunit delta {ECO:0000313|EMBL:KDM65744.1}; EC=2.7.7.7 {ECO:0000313|EMBL:KDM65744.1};; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. JA12-A1.;"
Putative DNA polymerase III subunit delta n=1 Tax=Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / AIU301) RepID=F0J5L4_ACIMA
SCN18_30_10_14_R2_B_scaffold_296_19
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12921..13547)
DNA (627bp) protein (209aa)
Thymidylate kinase {ECO:0000256|HAMAP-Rule:MF_00165}; EC=2.7.4.9 {ECO:0000256|HAMAP-Rule:MF_00165};; dTMP kinase {ECO:0000256|HAMAP-Rule:MF_00165}; TaxID=862719 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum lipoferum (strain 4B).;"
Thymidylate kinase n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7Z7P4_AZOL4
tmk; thymidylate kinase
SCN18_30_10_14_R2_B_scaffold_296_20
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13556..14701)
DNA (1146bp) protein (382aa)
D-alanyl-D-alanine carboxypeptidase n=1 Tax=Oceanicaulis alexandrii RepID=UPI0003B45AFA
D-alanyl-D-alanine carboxypeptidase {ECO:0000313|EMBL:EWY42246.1}; TaxID=1385369 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
dacA; D-alanyl-D-alanine carboxypeptidase
SCN18_30_10_14_R2_B_scaffold_296_21
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14724..15662)
DNA (939bp) protein (313aa)
Rare lipoprotein A n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HXT2_PARL1
rare lipoprotein A
Rare lipoprotein A {ECO:0000313|EMBL:ABS64715.1}; Flags: Precursor;; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCN18_30_10_14_R2_B_scaffold_296_22
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15923..16303
DNA (381bp) protein (127aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI000370460C
Sphingomonas taxi strain 30a NODE_10, whole genome shotgun sequence {ECO:0000313|EMBL:KIU28537.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
17 kDa surface antigen
SCN18_30_10_14_R2_B_scaffold_296_trna_3
unknown

Not on your lists

comp(16312..16398)
DNA (87bp)
transferRNA Ser
SCN18_30_10_14_R2_B_scaffold_296_23
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16432..18243)
DNA (1812bp) protein (604aa)
UPI0003CFE139 related cluster n=1 Tax=unknown RepID=UPI0003CFE139
ATP-dependent DNA helicase RecQ {ECO:0000313|EMBL:ESZ18698.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
ATP-dependent DNA helicase RecQ
SCN18_30_10_14_R2_B_scaffold_296_24
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18304..19206)
DNA (903bp) protein (301aa)
hypothetical protein n=1 Tax=Sandarakinorhabdus sp. AAP62 RepID=UPI00030BEE64
Uncharacterized protein {ECO:0000313|EMBL:ENY81750.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein
SCN18_30_10_14_R2_B_scaffold_296_25
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19388..19870
DNA (483bp) protein (161aa)
GCN5 family N-acetyltransferase n=1 Tax=Pseudomonas sp. EGD-AK9 RepID=U2B5F7_9PSED
Diamine acetyltransferase {ECO:0000313|EMBL:KIJ72262.1}; TaxID=1245935 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Tolypothrix.;" source="Tolypothrix campylonemoides VB511288.;"
N-acetyltransferase GCN5
SCN18_30_10_14_R2_B_scaffold_296_26
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19867..21573)
DNA (1707bp) protein (569aa)
amidohydrolase n=1 Tax=Sandarakinorhabdus limnophila RepID=UPI0003B34B16
Amidohydrolase 3
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
SCN18_30_10_14_R2_B_scaffold_296_27
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21711..23903)
DNA (2193bp) protein (731aa)
Penicilin amidase n=1 Tax=Caulobacter crescentus OR37 RepID=R0CXN9_CAUCE
Penicilin amidase {ECO:0000313|EMBL:ENZ81226.1}; TaxID=1292034 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter crescentus OR37.;"
penicillin acylase
SCN18_30_10_14_R2_B_scaffold_296_28
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24075..24695
DNA (621bp) protein (207aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0003193933
UPF0056 membrane protein {ECO:0000256|RuleBase:RU362048}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
multiple antibiotic resistance MarC-related protein
SCN18_30_10_14_R2_B_scaffold_296_29
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24762..25961
DNA (1200bp) protein (400aa)
membrane dipeptidase (EC:3.4.13.19)
Peptidase M19 n=1 Tax=Sphingobium ummariense RL-3 RepID=T0IRG3_9SPHN
Peptidase M19 {ECO:0000313|EMBL:EQB31435.1}; TaxID=1346791 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium ummariense RL-3.;"
Displaying items 1-30 of 128 in total

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