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SCN18_25_8_15_R2_B_scaffold_1278

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_8_15_R2_B_scaffold_1278_1
SCNPILOT_CONT_1000_BF_Rhizobiales_65_18, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..4922
DNA (4920bp) protein (1640aa)
Kinesin-like protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REU2_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKC32917.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
kinesin-like protein
SCN18_25_8_15_R2_B_scaffold_1278_2
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5247..6455)
DNA (1209bp) protein (403aa)
hypothetical protein n=1 Tax=Wenxinia marina RepID=UPI000375F8AC
Uncharacterized protein {ECO:0000313|EMBL:KKB78550.1}; TaxID=1116389 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia insulae DS-56.;"
putative 3-phenylpropionic acid transporter
SCN18_25_8_15_R2_B_scaffold_1278_3
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6466..7689)
DNA (1224bp) protein (408aa)
hypothetical protein n=1 Tax=Wenxinia marina RepID=UPI000375F8AC
Uncharacterized protein {ECO:0000313|EMBL:KKB84865.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
putative 3-phenylpropionic acid transporter
SCN18_25_8_15_R2_B_scaffold_1278_4
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7779..8810)
DNA (1032bp) protein (344aa)
Glycosyltransferase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REU3_PELHB
GDP-mannose-dependent alpha-mannosyltransferase {ECO:0000313|EMBL:KFL27542.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
glycosyltransferase
SCN18_25_8_15_R2_B_scaffold_1278_5
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8900..9715)
DNA (816bp) protein (272aa)
Ser/Thr protein phosphatase family protein, UDP-2,3-diacylglucosamine hydrolase-like protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REU6_PELHB
Serine/threonine protein phosphatase {ECO:0000313|EMBL:KFL27541.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
Ser/Thr protein phosphatase family protein, UDP-2,3-diacylglucosamine hydrolase-like protein
SCN18_25_8_15_R2_B_scaffold_1278_6
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9863..10948)
DNA (1086bp) protein (362aa)
Beta-N-acetylhexosaminidase {ECO:0000256|SAAS:SAAS00114579}; EC=3.2.1.52 {ECO:0000256|SAAS:SAAS00114579};; TaxID=1293439 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia epidermidihirudinis.;"
Beta-hexosaminidase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REU9_PELHB
beta-hexosaminidase
SCN18_25_8_15_R2_B_scaffold_1278_7
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11026..12969)
DNA (1944bp) protein (648aa)
Acetyl-coenzyme A synthetase {ECO:0000256|HAMAP-Rule:MF_01123}; Short=AcCoA synthetase {ECO:0000256|HAMAP-Rule:MF_01123};; Short=Acs {ECO:0000256|HAMAP-Rule:MF_01123};; EC=6.2.1.1 {ECO:0000256|HAMAP-Rule:MF_01123};; Acetate--CoA ligase {ECO:0000256|HAMAP-Rule:MF_01123}; Acyl-activating enzyme {ECO:0000256|HAMAP-Rule:MF_01123}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
Acetyl-coenzyme A synthetase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REV1_PELHB
acetyl-coenzyme A synthetase
SCN18_25_8_15_R2_B_scaffold_1278_8
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13121..13687
DNA (567bp) protein (189aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REV3_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KFC66298.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1278_9
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13698..14399)
DNA (702bp) protein (234aa)
membrane protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00035F5565
Membrane protein {ECO:0000313|EMBL:KFL27534.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1278_trna_1
unknown

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comp(14595..14667)
DNA (73bp)
transferRNA Lys
SCN18_25_8_15_R2_B_scaffold_1278_10
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14789..15658
DNA (870bp) protein (290aa)
Small-conductance mechanosensitive channel n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D3G9_9RHIZ
Small-conductance mechanosensitive channel {ECO:0000313|EMBL:CDP51886.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
mechanosensitive ion channel protein
SCN18_25_8_15_R2_B_scaffold_1278_11
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(15790..16437)
DNA (648bp) protein (216aa)
Peptide methionine sulfoxide reductase MsrA {ECO:0000256|HAMAP-Rule:MF_01401}; Short=Protein-methionine-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401};; EC=1.8.4.11 {ECO:0000256|HAMAP-Rule:MF_01401};; Peptide-methionine (S)-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002E15FC7
peptide methionine sulfoxide reductase
SCN18_25_8_15_R2_B_scaffold_1278_12
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16575..17024)
DNA (450bp) protein (150aa)
Transcriptional regulator, AsnC family n=1 Tax=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) RepID=B1ZEL6_METPB
AsnC family transcriptional regulator
Transcriptional regulator, AsnC family {ECO:0000313|EMBL:ACB81080.1}; TaxID=441620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001).;"
SCN18_25_8_15_R2_B_scaffold_1278_13
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17131..18072
DNA (942bp) protein (314aa)
Arginase {ECO:0000256|RuleBase:RU361159}; EC=3.5.3.1 {ECO:0000256|RuleBase:RU361159};; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
Arginase n=1 Tax=Azospirillum brasilense Sp245 RepID=G8ATH8_AZOBR
arginase
SCN18_25_8_15_R2_B_scaffold_1278_14
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18150..19721)
DNA (1572bp) protein (524aa)
2-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_01025, ECO:0000256|SAAS:SAAS00049060}; EC=2.3.3.13 {ECO:0000256|HAMAP-Rule:MF_01025, ECO:0000256|SAAS:SAAS00085331};; Alpha-IPM synthase {ECO:0000256|HAMAP-Rule:MF_01025}; Alpha-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_01025}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
2-isopropylmalate synthase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REW0_PELHB
2-isopropylmalate synthase
SCN18_25_8_15_R2_B_scaffold_1278_15
SCNPILOT_CONT_1000_BF_Rhizobiales_65_18, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19837..19962)
DNA (126bp) protein (42aa)
SCN18_25_8_15_R2_B_scaffold_1278_16
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20050..20454)
DNA (405bp) protein (135aa)
Uncharacterized protein {ECO:0000313|EMBL:CDP51881.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
SCN18_25_8_15_R2_B_scaffold_1278_17
SCNPILOT_EXPT_1000_BF_Devosia_65_23, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(20462..20893)
DNA (432bp) protein (144aa)
Putative membrane protein {ECO:0000313|EMBL:KFC66309.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
SCN18_25_8_15_R2_B_scaffold_1278_18
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20960..21847)
DNA (888bp) protein (296aa)
Phenazine biosynthesis protein PhzF like protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REW1_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKC32906.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
phenazine biosynthesis protein PhzF like protein
SCN18_25_8_15_R2_B_scaffold_1278_19
SCNPILOT_EXPT_1000_BF_Devosia_65_23, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21935..22438)
DNA (504bp) protein (168aa)
UPI0003D05D16 related cluster n=1 Tax=unknown RepID=UPI0003D05D16
UPF0303 protein X737_00610 {ECO:0000256|HAMAP-Rule:MF_00761}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1278_20
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22507..23124)
DNA (618bp) protein (206aa)
Putative amino acid efflux protein, LysE family n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9R1_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KFL26025.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
putative amino acid efflux protein, LysE family
SCN18_25_8_15_R2_B_scaffold_1278_21
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23232..24740
DNA (1509bp) protein (503aa)
UPI0003CFE387 related cluster n=1 Tax=unknown RepID=UPI0003CFE387
Peptidase M32 {ECO:0000313|EMBL:ESZ18636.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
Zn-dependent carboxypeptidase
SCN18_25_8_15_R2_B_scaffold_1278_22
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24760..25185
DNA (426bp) protein (142aa)
ABC transporter permease n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI00036EC703
MFS permease {ECO:0000313|EMBL:CDP54167.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
transmembrane transport protein
Displaying 23 items

View Taxonomy