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SCN18_25_8_15_R2_B_scaffold_1292

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Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_8_15_R2_B_scaffold_1292_1
SCNPILOT_SOLID2_TRIM150_Rhizobiales_63_17, SCNPILOT_SOLID2_TRIM150_Rhizobiales_63_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..422)
DNA (420bp) protein (140aa)
hypothetical protein n=1 Tax=Mesorhizobium sp. WSM4349 RepID=UPI000378D1BC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EFI52988.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
SCN18_25_8_15_R2_B_scaffold_1292_2
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(466..1707)
DNA (1242bp) protein (414aa)
integrase n=1 Tax=Mesorhizobium sp. WSM4349 RepID=UPI00036A7D22
Putative integrase {ECO:0000313|EMBL:CDX24442.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1292_3
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1853..2473)
DNA (621bp) protein (207aa)
hypothetical protein n=1 Tax=Bradyrhizobium japonicum RepID=UPI000365B0F7
Uncharacterized protein {ECO:0000313|EMBL:KKB84073.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
DNA repair protein RadC
SCN18_25_8_15_R2_B_scaffold_1292_4
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2477..3307)
DNA (831bp) protein (277aa)
Methionine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_01974}; Short=MAP {ECO:0000256|HAMAP-Rule:MF_01974};; Short=MetAP {ECO:0000256|HAMAP-Rule:MF_01974};; EC=3.4.11.18 {ECO:0000256|HAMAP-Rule:MF_01974};; Peptidase M {ECO:0000256|HAMAP-Rule:MF_01974}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
Methionine aminopeptidase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RE52_PELHB
methionine aminopeptidase
SCN18_25_8_15_R2_B_scaffold_1292_5
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3439..4236
DNA (798bp) protein (266aa)
N-terminal domain of competence/damage-inducible protein CinA-like protein, molybdopterin binding motif n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RDL2_PELHB
Molybdenum cofactor biosynthesis protein {ECO:0000313|EMBL:KKB09839.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
N-terminal domain of competence/damage-inducible protein CinA-like protein, molybdopterin binding motif
SCN18_25_8_15_R2_B_scaffold_1292_6
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4298..4792
DNA (495bp) protein (165aa)
Xanthine phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01903, ECO:0000256|SAAS:SAAS00010603}; EC=2.4.2.22 {ECO:0000256|HAMAP-Rule:MF_01903, ECO:0000256|SAAS:SAAS00010679};; Xanthine-guanine phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01903}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
Xanthine phosphoribosyltransferase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RDL1_PELHB
xanthine-guanine phosphoribosyltransferase
SCN18_25_8_15_R2_B_scaffold_1292_7
SCNPILOT_EXPT_1000_BF_Devosia_65_23, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4807..5094)
DNA (288bp) protein (96aa)
Xre family transcriptional regulator n=1 Tax=Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / AIU301) RepID=F0J7P2_ACIMA
Transcriptional regulator, XRE family
Transcriptional regulator, XRE family {ECO:0000313|EMBL:CDN49374.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
SCN18_25_8_15_R2_B_scaffold_1292_8
SCNPILOT_EXPT_1000_BF_Devosia_65_23, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5091..5417)
DNA (327bp) protein (109aa)
Uncharacterized protein n=1 Tax=Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / AIU301) RepID=F0J7P1_ACIMA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAJ83108.1}; TaxID=926570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / NBRC 100883 /; AIU301).;"
SCN18_25_8_15_R2_B_scaffold_1292_trna_1
unknown

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5510..5592
DNA (83bp)
transferRNA Leu
SCN18_25_8_15_R2_B_scaffold_1292_9
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5612..5899
DNA (288bp) protein (96aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RDL0_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KFC66087.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1292_10
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5896..6399
DNA (504bp) protein (168aa)
Uncharacterized protein n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KLN3_MESAW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGB45590.1}; Flags: Precursor;; TaxID=754035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073).;"
SCN18_25_8_15_R2_B_scaffold_1292_11
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6557..6739
DNA (183bp) protein (61aa)
CsbD-like protein n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11J10_MESSB
CsbD-like protein
CsbD-like protein {ECO:0000313|EMBL:ABG62615.1}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
SCN18_25_8_15_R2_B_scaffold_1292_12
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7607..7912
DNA (306bp) protein (102aa)
SCN18_25_8_15_R2_B_scaffold_1292_13
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8025..8621)
DNA (597bp) protein (199aa)
Deaminase-reductase domain-containing protein n=2 Tax=Ochrobactrum intermedium RepID=C4WJ53_9RHIZ
deaminase-reductase domain-containing protein
Deaminase-reductase domain-containing protein {ECO:0000313|EMBL:EEQ96761.1}; TaxID=641118 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum intermedium LMG 3301.;"
SCN18_25_8_15_R2_B_scaffold_1292_14
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8656..9183
DNA (528bp) protein (176aa)
TetR family transcriptional regulator n=1 Tax=Agrobacterium sp. ATCC 31749 RepID=F5JJS6_9RHIZ
TetR family transcriptional regulator {ECO:0000313|EMBL:KFL28692.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
Transcriptional regulator, repressor protein MphR(A)
SCN18_25_8_15_R2_B_scaffold_1292_15
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9270..9764
DNA (495bp) protein (165aa)
hypothetical protein n=1 Tax=Pseudomonas nitroreducens RepID=UPI00036246EA
ADA regulatory protein / methylated-DNA--protein-cysteine methyltransferase {ECO:0000313|EMBL:KFC66090.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1292_16
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9793..10353)
DNA (561bp) protein (187aa)
UPI0003CE6EBA related cluster n=1 Tax=unknown RepID=UPI0003CE6EBA
Uncharacterized protein {ECO:0000313|EMBL:KKB09830.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
gluconokinase
SCN18_25_8_15_R2_B_scaffold_1292_17
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10322..11092)
DNA (771bp) protein (257aa)
5-keto-D-gluconate 5-reductase {ECO:0000313|EMBL:CDP50458.1}; EC=1.1.1.69 {ECO:0000313|EMBL:CDP50458.1};; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
idnO; gluconate 5-dehydrogenase (EC:1.1.1.69)
gluconate 5-dehydrogenase n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI00035E273F
SCN18_25_8_15_R2_B_scaffold_1292_18
SCNPILOT_EXPT_1000_BF_Devosia_65_23, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11272..12690
DNA (1419bp) protein (473aa)
6-phosphogluconate dehydrogenase, decarboxylating {ECO:0000256|PIRNR:PIRNR000109}; EC=1.1.1.44 {ECO:0000256|PIRNR:PIRNR000109};; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
6-phosphogluconate dehydrogenase, decarboxylating n=1 Tax=Nitratireductor indicus C115 RepID=K2NUL4_9RHIZ
6-phosphogluconate dehydrogenase
SCN18_25_8_15_R2_B_scaffold_1292_19
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12971..14137)
DNA (1167bp) protein (389aa)
Ribonuclease D {ECO:0000256|HAMAP-Rule:MF_01899}; Short=RNase D {ECO:0000256|HAMAP-Rule:MF_01899};; EC=3.1.13.5 {ECO:0000256|HAMAP-Rule:MF_01899};; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
Ribonuclease D n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBA1_PELHB
ribonuclease D
SCN18_25_8_15_R2_B_scaffold_1292_20
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


14372..16138
DNA (1767bp) protein (589aa)
Aspartate--tRNA ligase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBA0_PELHB
Aspartyl-tRNA synthetase {ECO:0000313|EMBL:KKB09545.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
aspartyl-tRNA synthetase
SCN18_25_8_15_R2_B_scaffold_1292_21
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16376..17971
DNA (1596bp) protein (532aa)
EAL domain protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RB99_PELHB
EAL domain protein {ECO:0000313|EMBL:KFC72418.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
diguanylate phosphodiesterase
SCN18_25_8_15_R2_B_scaffold_1292_22
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18149..20443
DNA (2295bp) protein (765aa)
Malic enzyme {ECO:0000313|EMBL:KKB82870.1}; EC=1.1.1.40 {ECO:0000313|EMBL:KKB82870.1};; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
NADP-dependent malic enzyme n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RB98_PELHB
NADP-dependent malic enzyme
SCN18_25_8_15_R2_B_scaffold_1292_23
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20443..20733
DNA (291bp) protein (97aa)
UPI0003CF479A related cluster n=1 Tax=unknown RepID=UPI0003CF479A
Stress responsive alpha-beta barrel domain-containing protein {ECO:0000313|EMBL:KKB83514.1}; TaxID=1116389 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia insulae DS-56.;"
Stress responsive alpha-beta barrel domain-containing protein
SCN18_25_8_15_R2_B_scaffold_1292_24
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20778..22253)
DNA (1476bp) protein (492aa)
AMP nucleosidase {ECO:0000256|HAMAP-Rule:MF_01932}; EC=3.2.2.4 {ECO:0000256|HAMAP-Rule:MF_01932};; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
AMP nucleosidase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RB97_PELHB
AMP nucleosidase
SCN18_25_8_15_R2_B_scaffold_1292_25
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22614..23177
DNA (564bp) protein (188aa)
UPI0003CF4D3F related cluster n=1 Tax=unknown RepID=UPI0003CF4D3F
Uncharacterized protein {ECO:0000313|EMBL:ESY03864.1}; TaxID=1287277 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNJC399B00.;"
SCN18_25_8_15_R2_B_scaffold_1292_26
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23206..23709
DNA (504bp) protein (168aa)
Putative uncharacterized protein n=1 Tax=Azospirillum amazonense Y2 RepID=G1XVD3_9PROT
Uncharacterized protein {ECO:0000313|EMBL:KKB83734.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1292_27
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23714..24370)
DNA (657bp) protein (219aa)
Oxidoreductase molybdopterin binding protein n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A925_STAND
Sulfite oxidase and related enzymes {ECO:0000313|EMBL:CDP52615.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
oxidoreductase molybdopterin binding protein
SCN18_25_8_15_R2_B_scaffold_1292_28
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24533..24973
DNA (441bp) protein (147aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0I213_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CDP52618.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
hypothetical protein
Displaying 29 items

View Taxonomy