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SCN18_25_8_15_R2_B_scaffold_1393

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_8_15_R2_B_scaffold_1393_1
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(115..1122)
DNA (1008bp) protein (336aa)
Oligopeptide transport ATP-binding protein OppF n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RA00_PELHB
Oligopeptide transport ATP-binding protein OppF {ECO:0000313|EMBL:KFC69766.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
oligopeptide transport ATP-binding protein OppF
SCN18_25_8_15_R2_B_scaffold_1393_2
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1122..1706)
DNA (585bp) protein (195aa)
Oligopeptide transport ATP-binding protein OppD n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RA01_PELHB
Oligopeptide transporter ATP-binding component {ECO:0000313|EMBL:KKB10955.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
oligopeptide transport ATP-binding protein OppD
SCN18_25_8_15_R2_B_scaffold_1393_3
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2090..3004)
DNA (915bp) protein (305aa)
peptide ABC transporter permease n=1 Tax=Rhizobium mongolense RepID=UPI0003B48488
Oligopeptide transport system permease protein Opp C {ECO:0000313|EMBL:CDP52880.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
oppC; oligopeptide ABC transporter permease protein OppC
SCN18_25_8_15_R2_B_scaffold_1393_4
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3004..3927)
DNA (924bp) protein (308aa)
ABC transporter n=1 Tax=Aureimonas ureilytica RepID=UPI0003665265
Oligopeptide transporter permease {ECO:0000313|EMBL:KFL26089.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
oppB; oligopeptide ABC transporter permease protein OppB
SCN18_25_8_15_R2_B_scaffold_1393_5
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4036..5649)
DNA (1614bp) protein (538aa)
peptide ABC transporter substrate-binding protein n=1 Tax=Rhizobium mongolense RepID=UPI0003B6FA44
Peptide ABC transporter substrate-binding protein {ECO:0000313|EMBL:KFL26090.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
oppA; oligopeptide ABC transporter substrate-binding protein OppA
SCN18_25_8_15_R2_B_scaffold_1393_6
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5837..7120)
DNA (1284bp) protein (428aa)
Acetyl-CoA acetyltransferase {ECO:0000313|EMBL:KFL26091.1}; EC=2.3.1.9 {ECO:0000313|EMBL:KFL26091.1};; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
3-ketoacyl-CoA thiolase / acetyl-CoA acetyltransferase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RA05_PELHB
3-ketoacyl-CoA thiolase
SCN18_25_8_15_R2_B_scaffold_1393_7
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7120..9105)
DNA (1986bp) protein (662aa)
Alpha-subunit of fatty acid oxidation complex n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RA06_PELHB
3-hydroxyacyl-CoA dehydrogenase {ECO:0000313|EMBL:KKB10963.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
alpha-subunit of fatty acid oxidation complex
SCN18_25_8_15_R2_B_scaffold_1393_8
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9126..11609)
DNA (2484bp) protein (828aa)
Butyryl-CoA dehydrogenase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RA07_PELHB
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:KFL26093.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
butyryl-CoA dehydrogenase
SCN18_25_8_15_R2_B_scaffold_1393_9
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11950..13668
DNA (1719bp) protein (573aa)
Long-chain-fatty-acid--CoA ligase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RA08_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB82625.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
long-chain-fatty-acid--CoA ligase
SCN18_25_8_15_R2_B_scaffold_1393_10
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13655..14047
DNA (393bp) protein (131aa)
Putative transcriptional regulator LiuR of leucine degradation pathway, MerR family n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RA09_PELHB
Predicted transcriptional regulator LiuR of leucin e degradation pathway, MerR family {ECO:0000313|EMBL:CDP52872.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
putative transcriptional regulator LiuR of leucine degradation pathway, MerR family
SCN18_25_8_15_R2_B_scaffold_1393_11
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14090..14707
DNA (618bp) protein (206aa)
SCN18_25_8_15_R2_B_scaffold_1393_12
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14710..14967)
DNA (258bp) protein (86aa)
excinuclease ABC subunit B n=1 Tax=Sphingopyxis baekryungensis RepID=UPI0003B3FB0A
Uncharacterized protein {ECO:0000313|EMBL:CDP52870.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
excinuclease ABC subunit B
SCN18_25_8_15_R2_B_scaffold_1393_13
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14978..16555)
DNA (1578bp) protein (526aa)
ATP-dependent DNA ligase LigC {ECO:0000313|EMBL:CDP52869.1}; EC=6.5.1.1 {ECO:0000313|EMBL:CDP52869.1};; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
ATP-dependent DNA ligase LigC n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGY5_PELHB
ATP-dependent DNA ligase LigC
SCN18_25_8_15_R2_B_scaffold_1393_14
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16552..17562)
DNA (1011bp) protein (337aa)
mRNA 3-end processing factor n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGY4_PELHB
Beta-lactamase {ECO:0000313|EMBL:KKB79506.1}; TaxID=1116389 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia insulae DS-56.;"
mRNA 3-end processing factor
SCN18_25_8_15_R2_B_scaffold_1393_15
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17677..18168
DNA (492bp) protein (164aa)
3'''',5''''-cyclic-nucleotide phosphodiesterase n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B46616
hypothetical protein
Tax=RBG_16_Alphaproteobacteria_64_48_curated
SCN18_25_8_15_R2_B_scaffold_1393_16
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(18238..18675)
DNA (438bp) protein (146aa)
thioredoxin n=1 Tax=Thioalkalivibrio sp. ALJ17 RepID=UPI00036DB215
thioredoxin
Thioredoxin {ECO:0000313|EMBL:ACL74350.1}; TaxID=396588 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio sulfidiphilus (strain HL-EbGR7).;"
SCN18_25_8_15_R2_B_scaffold_1393_17
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18831..21752)
DNA (2922bp) protein (974aa)
Peptidase M16C associated domain protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RCM7_PELHB
Peptidase M16 {ECO:0000313|EMBL:KFL26101.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
peptidase M16C associated domain protein
SCN18_25_8_15_R2_B_scaffold_1393_18
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21993..22973)
DNA (981bp) protein (327aa)
Aldo/keto reductase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REI2_PELHB
Aldo/keto reductase {ECO:0000313|EMBL:KFL29676.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
aldo/keto reductase
SCN18_25_8_15_R2_B_scaffold_1393_19
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23064..24659)
DNA (1596bp) protein (532aa)
Peptide chain release factor 3 n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4R2S7_9RHIZ
Peptide chain release factor 3 {ECO:0000256|HAMAP-Rule:MF_00072, ECO:0000256|SAAS:SAAS00089051}; Short=RF-3 {ECO:0000256|HAMAP-Rule:MF_00072};; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
peptide chain release factor 3
SCN18_25_8_15_R2_B_scaffold_1393_20
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24767..24892)
DNA (126bp) protein (42aa)
Displaying 20 items

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