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SCN18_25_8_15_R2_B_scaffold_1452

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_8_15_R2_B_scaffold_1452_1
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..90
DNA (90bp) protein (30aa)
Integrase catalytic region n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MI52_9RHIZ
Integrase {ECO:0000313|EMBL:KKB84675.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
SCN18_25_8_15_R2_B_scaffold_1452_2
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

184..636
DNA (453bp) protein (151aa)
Uncharacterized protein n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2Q642_9RHIZ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EKF60680.1}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
SCN18_25_8_15_R2_B_scaffold_1452_3
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

633..1433
DNA (801bp) protein (267aa)
membrane protein, partial n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B7819F
hypothetical protein
Mlr8090 protein {ECO:0000313|EMBL:BAB53729.1}; TaxID=266835 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Rhizobium loti (strain MAFF303099) (Mesorhizobium loti).;"
SCN18_25_8_15_R2_B_scaffold_1452_4
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1405..2748)
DNA (1344bp) protein (448aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
Signal transduction histidine kinase n=1 Tax=Rhizobium sp. AP16 RepID=J2KZR9_9RHIZ
two component sensor kinase
SCN18_25_8_15_R2_B_scaffold_1452_5
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2745..3404)
DNA (660bp) protein (220aa)
DNA-binding response regulator n=2 Tax=Oligotropha carboxidovorans RepID=B6JDT1_OLICO
Transcriptional regulator {ECO:0000313|EMBL:KFL26822.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
qseB; transcriptional regulator QseB
SCN18_25_8_15_R2_B_scaffold_1452_6
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3554..3817
DNA (264bp) protein (88aa)
UPI0003CE3297 related cluster n=1 Tax=unknown RepID=UPI0003CE3297
Uncharacterized protein {ECO:0000313|EMBL:CDP50291.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1452_7
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3801..4361
DNA (561bp) protein (187aa)
hypothetical protein n=1 Tax=Arhodomonas aquaeolei RepID=UPI00035E8B3C
Cytochrome B561 {ECO:0000313|EMBL:KFL26820.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
cytochrome b
SCN18_25_8_15_R2_B_scaffold_1452_8
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4426..4989)
DNA (564bp) protein (188aa)
CarD-like transcriptional regulator n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RF08_PELHB
CarD family transcriptional regulator {ECO:0000313|EMBL:KKB11137.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
CarD-like transcriptional regulator
SCN18_25_8_15_R2_B_scaffold_1452_9
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5320..5658)
DNA (339bp) protein (113aa)
Ferredoxin II n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HLV0_9RHIZ
Ferredoxin {ECO:0000313|EMBL:KKB11138.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
ferredoxin
SCN18_25_8_15_R2_B_scaffold_1452_10
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5906..6190
DNA (285bp) protein (95aa)
HigB toxin protein n=1 Tax=Rhodovulum sp. PH10 RepID=J6UCE1_9RHOB
HigB toxin protein {ECO:0000313|EMBL:EJW10459.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
plasmid maintenance system killer protein
SCN18_25_8_15_R2_B_scaffold_1452_11
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6201..6485
DNA (285bp) protein (95aa)
Putative plasmid maintenance system antidote protein, XRE family n=1 Tax=Bradyrhizobium sp. ORS 285 RepID=H0S3K6_9BRAD
Putative plasmid maintenance system antidote protein, XRE family {ECO:0000313|EMBL:CCD88783.1}; TaxID=115808 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. ORS 285.;"
putative plasmid maintenance system antidote protein, XRE family
SCN18_25_8_15_R2_B_scaffold_1452_12
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6482..6871)
DNA (390bp) protein (130aa)
UPI0003CFF6A9 related cluster n=1 Tax=unknown RepID=UPI0003CFF6A9
Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) {ECO:0000313|EMBL:CDP51842.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
ribosome-associated heat shock protein implicated in recycling of 50S subunit
SCN18_25_8_15_R2_B_scaffold_1452_13
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6878..9937)
DNA (3060bp) protein (1020aa)
ATP-dependent DNA helicase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REZ6_PELHB
Helicase {ECO:0000313|EMBL:KFL26193.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
ATP-dependent DNA helicase
SCN18_25_8_15_R2_B_scaffold_1452_14
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10595..11389)
DNA (795bp) protein (265aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REZ1_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KFL26178.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1452_15
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11585..11869
DNA (285bp) protein (95aa)
50S ribosomal protein L28 n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REZ0_PELHB
50S ribosomal protein L28 {ECO:0000256|HAMAP-Rule:MF_00373}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
50S ribosomal protein L28
SCN18_25_8_15_R2_B_scaffold_1452_16
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12118..12801
DNA (684bp) protein (228aa)
Putative preQ0 transporter n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REY9_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB83627.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
putative preQ0 transporter
SCN18_25_8_15_R2_B_scaffold_1452_17
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12798..13826)
DNA (1029bp) protein (343aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REY7_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KFC66051.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1452_18
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13823..15715)
DNA (1893bp) protein (631aa)
Aerobic cobaltochelatase CobT subunit n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REY6_PELHB
Cobalt chelatase {ECO:0000313|EMBL:KKB77687.1}; TaxID=1116389 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia insulae DS-56.;"
aerobic cobaltochelatase CobT subunit
SCN18_25_8_15_R2_B_scaffold_1452_19
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15882..16859)
DNA (978bp) protein (326aa)
Aerobic cobaltochelatase CobS subunit n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REY5_PELHB
Cobalamin biosynthesis protein CobS {ECO:0000313|EMBL:KKB83630.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
aerobic cobaltochelatase CobS subunit
SCN18_25_8_15_R2_B_scaffold_1452_20
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17080..17721)
DNA (642bp) protein (214aa)
Putative with DnaJ-like domain protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REY4_PELHB
FIG003437: hypothetical with DnaJ-like domain {ECO:0000313|EMBL:CDP51807.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
putative with DnaJ-like domain-containing protein
SCN18_25_8_15_R2_B_scaffold_1452_21
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17772..18032
DNA (261bp) protein (87aa)
BolA family transcriptional regulator n=2 Tax=Labrenzia RepID=U7FQ34_9RHOB
Cell division protein BolA {ECO:0000313|EMBL:CDP51808.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
BolA-like protein
SCN18_25_8_15_R2_B_scaffold_1452_22
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18211..19209
DNA (999bp) protein (333aa)
hypothetical protein n=1 Tax=Pannonibacter phragmitetus RepID=UPI00035C1DC7
Uncharacterized protein {ECO:0000313|EMBL:CDP51810.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
SCN18_25_8_15_R2_B_scaffold_1452_23
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19285..20406)
DNA (1122bp) protein (374aa)
3-dehydroquinate synthase {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210858}; EC=4.2.3.4 {ECO:0000256|HAMAP-Rule:MF_00110};; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
3-dehydroquinate synthase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REY1_PELHB
3-dehydroquinate synthase
SCN18_25_8_15_R2_B_scaffold_1452_24
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20399..20992)
DNA (594bp) protein (198aa)
Shikimate kinase {ECO:0000256|HAMAP-Rule:MF_00109}; Short=SK {ECO:0000256|HAMAP-Rule:MF_00109};; EC=2.7.1.71 {ECO:0000256|HAMAP-Rule:MF_00109};; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
Shikimate kinase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REY0_PELHB
shikimate kinase
SCN18_25_8_15_R2_B_scaffold_1452_25
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21123..21416
DNA (294bp) protein (98aa)
Uncharacterized protein n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=A6WXC5_OCHA4
Uncharacterized protein {ECO:0000313|EMBL:CDP51813.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1452_26
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21413..21985
DNA (573bp) protein (191aa)
Tyrosine recombinase XerD n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REG6_PELHB
Tyrosine recombinase XerD {ECO:0000256|HAMAP-Rule:MF_01807}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
tyrosine recombinase XerD
Displaying 26 items

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