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SCN18_25_8_15_R2_B_scaffold_1457

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_8_15_R2_B_scaffold_1457_1
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..2158
DNA (2157bp) protein (719aa)
Lon protease {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174}; EC=3.4.21.53 {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174};; ATP-dependent protease La {ECO:0000256|HAMAP-Rule:MF_01973}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
Lon protease n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RAH2_PELHB
ATP-dependent protease La type I
SCN18_25_8_15_R2_B_scaffold_1457_2
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2287..3444
DNA (1158bp) protein (386aa)
Phosphonate metabolism protein n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q982A9_RHILO
phosphonate metabolism protein
Phosphonate metabolism protein {ECO:0000313|EMBL:BAB54550.1}; TaxID=266835 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Rhizobium loti (strain MAFF303099) (Mesorhizobium loti).;"
SCN18_25_8_15_R2_B_scaffold_1457_3
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3569..4768
DNA (1200bp) protein (400aa)
Major facilitator superfamily MFS_1 n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q216R4_RHOPB
TetA {ECO:0000313|EMBL:AIA18789.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
major facilitator transporter
SCN18_25_8_15_R2_B_scaffold_1457_4
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4923..5198
DNA (276bp) protein (92aa)
DNA-binding protein HupA n=1 Tax=Oceanibaculum indicum P24 RepID=K2J414_9PROT
DNA-binding protein HU-beta {ECO:0000313|EMBL:CDP53667.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
hup; DNA-binding protein HU
SCN18_25_8_15_R2_B_scaffold_1457_trna_2
unknown

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comp(5276..5348)
DNA (73bp)
transferRNA Val
SCN18_25_8_15_R2_B_scaffold_1457_trna_1
unknown

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5533..5612
DNA (80bp)
transferRNA Asp
SCN18_25_8_15_R2_B_scaffold_1457_5
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5784..6329
DNA (546bp) protein (182aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R856_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KFL32546.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1457_6
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6635..7000
DNA (366bp) protein (122aa)
NADH-quinone oxidoreductase subunit A {ECO:0000256|HAMAP-Rule:MF_01394}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01394};; NADH dehydrogenase I subunit A {ECO:0000256|HAMAP-Rule:MF_01394}; NDH-1 subunit A {ECO:0000256|HAMAP-Rule:MF_01394}; NUO1 {ECO:0000256|HAMAP-Rule:MF_01394}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
NADH-quinone oxidoreductase subunit A n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R859_PELHB
NADH ubiquinone oxidoreductase chain A
SCN18_25_8_15_R2_B_scaffold_1457_7
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6991..7566
DNA (576bp) protein (192aa)
NADH-quinone oxidoreductase subunit B {ECO:0000256|HAMAP-Rule:MF_01356}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01356};; NADH dehydrogenase I subunit B {ECO:0000256|HAMAP-Rule:MF_01356}; NDH-1 subunit B {ECO:0000256|HAMAP-Rule:MF_01356}; TaxID=1293439 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia epidermidihirudinis.;"
NADH dehydrogenase subunit B n=1 Tax=Martelella mediterranea RepID=UPI00037888E2
NDH-1 subunit B
SCN18_25_8_15_R2_B_scaffold_1457_8
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7575..8186
DNA (612bp) protein (204aa)
NADH-quinone oxidoreductase subunit C {ECO:0000256|HAMAP-Rule:MF_01357}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01357};; NADH dehydrogenase I subunit C {ECO:0000256|HAMAP-Rule:MF_01357}; NDH-1 subunit C {ECO:0000256|HAMAP-Rule:MF_01357}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
NADH-quinone oxidoreductase subunit C n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R861_PELHB
NADH-ubiquinone oxidoreductase subunit C
SCN18_25_8_15_R2_B_scaffold_1457_9
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8186..9376
DNA (1191bp) protein (397aa)
NADH-quinone oxidoreductase subunit D {ECO:0000256|HAMAP-Rule:MF_01358}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01358};; NADH dehydrogenase I subunit D {ECO:0000256|HAMAP-Rule:MF_01358}; NDH-1 subunit D {ECO:0000256|HAMAP-Rule:MF_01358}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
NADH dehydrogenase subunit D n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00031F1134
NADH-ubiquinone oxidoreductase subunit D
SCN18_25_8_15_R2_B_scaffold_1457_10
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9376..10623
DNA (1248bp) protein (416aa)
NADH-ubiquinone oxidoreductase chain E {ECO:0000313|EMBL:CDP54227.1}; EC=1.6.5.3 {ECO:0000313|EMBL:CDP54227.1};; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
NADH-ubiquinone oxidoreductase chain E n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R863_PELHB
NADH-ubiquinone oxidoreductase subunit E
SCN18_25_8_15_R2_B_scaffold_1457_11
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10623..11936
DNA (1314bp) protein (438aa)
NADH dehydrogenase {ECO:0000313|EMBL:KKB78027.1}; EC=1.6.99.5 {ECO:0000313|EMBL:KKB78027.1};; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
NADH-ubiquinone oxidoreductase chain F n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R864_PELHB
NADH-ubiquinone oxidoreductase subunit F
SCN18_25_8_15_R2_B_scaffold_1457_12
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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12071..14182
DNA (2112bp) protein (704aa)
NADH-ubiquinone oxidoreductase chain G {ECO:0000313|EMBL:CDP54223.1}; EC=1.6.5.3 {ECO:0000313|EMBL:CDP54223.1};; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
NADH-ubiquinone oxidoreductase chain G n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R865_PELHB
NADH-ubiquinone oxidoreductase subunit G
SCN18_25_8_15_R2_B_scaffold_1457_13
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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14192..15289
DNA (1098bp) protein (366aa)
NADH-quinone oxidoreductase subunit H {ECO:0000256|HAMAP-Rule:MF_01350}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01350};; NADH dehydrogenase I subunit H {ECO:0000256|HAMAP-Rule:MF_01350}; NDH-1 subunit H {ECO:0000256|HAMAP-Rule:MF_01350}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
NADH-quinone oxidoreductase subunit H n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R866_PELHB
NADH-ubiquinone oxidoreductase subunit H
SCN18_25_8_15_R2_B_scaffold_1457_14
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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15289..15777
DNA (489bp) protein (163aa)
NADH-quinone oxidoreductase subunit I {ECO:0000256|HAMAP-Rule:MF_01351}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01351};; NADH dehydrogenase I subunit I {ECO:0000256|HAMAP-Rule:MF_01351}; NDH-1 subunit I {ECO:0000256|HAMAP-Rule:MF_01351}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
NADH-quinone oxidoreductase subunit I n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R867_PELHB
NADH-ubiquinone oxidoreductase subunit I
SCN18_25_8_15_R2_B_scaffold_1457_15
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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15787..16395
DNA (609bp) protein (203aa)
NADH-ubiquinone oxidoreductase chain J n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R868_PELHB
NADH:ubiquinone oxidoreductase subunit J {ECO:0000313|EMBL:KKB08485.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
NADH-ubiquinone oxidoreductase subunit J
SCN18_25_8_15_R2_B_scaffold_1457_16
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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16396..16716
DNA (321bp) protein (107aa)
NADH-quinone oxidoreductase subunit K {ECO:0000256|HAMAP-Rule:MF_01456}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01456};; NADH dehydrogenase I subunit K {ECO:0000256|HAMAP-Rule:MF_01456}; NDH-1 subunit K {ECO:0000256|HAMAP-Rule:MF_01456}; TaxID=1293439 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia epidermidihirudinis.;"
PREDICTED: NADH-ubiquinone oxidoreductase chain 4L-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C18BDC
NADH-ubiquinone/plastoquinone oxidoreductase chain 4L family protein
SCN18_25_8_15_R2_B_scaffold_1457_17
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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16721..18793
DNA (2073bp) protein (691aa)
NADH-ubiquinone oxidoreductase chain L n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R870_PELHB
NADH:ubiquinone oxidoreductase subunit L {ECO:0000313|EMBL:KFL26038.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
NADH-ubiquinone oxidoreductase subunit L
SCN18_25_8_15_R2_B_scaffold_1457_18
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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18790..20310
DNA (1521bp) protein (507aa)
NADH-ubiquinone oxidoreductase chain M {ECO:0000313|EMBL:CDP54217.1}; EC=1.6.5.3 {ECO:0000313|EMBL:CDP54217.1};; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
NADH-ubiquinone oxidoreductase chain M n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R871_PELHB
NADH-ubiquinone oxidoreductase subunit M
SCN18_25_8_15_R2_B_scaffold_1457_19
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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20382..21830
DNA (1449bp) protein (483aa)
NADH-quinone oxidoreductase subunit N {ECO:0000256|HAMAP-Rule:MF_00445}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_00445};; NADH dehydrogenase I subunit N {ECO:0000256|HAMAP-Rule:MF_00445}; NDH-1 subunit N {ECO:0000256|HAMAP-Rule:MF_00445}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
NADH-quinone oxidoreductase subunit N n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R872_PELHB
NADH-ubiquinone oxidoreductase subunit N
SCN18_25_8_15_R2_B_scaffold_1457_20
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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21830..21949
DNA (120bp) protein (40aa)
Biotin n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FE29_9RHIZ
Biotin {ECO:0000313|EMBL:ESX69376.1}; TaxID=1287292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
birA, biotin-(acetyl-CoA-carboxylase) ligase
Displaying 22 items

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