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SCN18_25_8_15_R2_B_scaffold_1467

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_8_15_R2_B_scaffold_1467_1
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..87
DNA (87bp) protein (29aa)
Integrase {ECO:0000313|EMBL:KKB84675.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
SCN18_25_8_15_R2_B_scaffold_1467_2
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(572..1735)
DNA (1164bp) protein (388aa)
Putative uncharacterized protein (Fragment) n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HQC0_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHK57092.1}; Flags: Fragment;; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1467_3
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1857..2333)
DNA (477bp) protein (159aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HQB7_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHK57089.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1467_4
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2347..2694)
DNA (348bp) protein (116aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HQB6_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHK57088.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
HTH-type DNA-binding domain-containing protein
SCN18_25_8_15_R2_B_scaffold_1467_5
unknown

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comp(2707..2940)
DNA (234bp) protein (78aa)

This feature has no annotations

SCN18_25_8_15_R2_B_scaffold_1467_6
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3266..4345
DNA (1080bp) protein (360aa)
Site-specific recombinase, phage integrase family protein {ECO:0000313|EMBL:KKW08287.1}; TaxID=1618669 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Kaiserbacteria) bacterium GW2011_GWA2_49_19.;"
Site-specific recombinase, phage integrase family protein id=1981232 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
phage integrase
SCN18_25_8_15_R2_B_scaffold_1467_7
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4673..4915)
DNA (243bp) protein (81aa)
SCN18_25_8_15_R2_B_scaffold_1467_8
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4905..5639)
DNA (735bp) protein (245aa)
UPI0003D04781 related cluster n=1 Tax=unknown RepID=UPI0003D04781
Uncharacterized protein {ECO:0000313|EMBL:ESZ51050.1}; TaxID=1287100 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C054A000.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1467_9
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5653..6003)
DNA (351bp) protein (117aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HQB8_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHK57090.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1467_10
unknown

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comp(6259..6483)
DNA (225bp) protein (75aa)

This feature has no annotations

SCN18_25_8_15_R2_B_scaffold_1467_11
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6842..9229
DNA (2388bp) protein (796aa)
Uncharacterized protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HPY2_PARL1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABS61965.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCN18_25_8_15_R2_B_scaffold_1467_12
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9364..10323
DNA (960bp) protein (320aa)
hypothetical protein n=1 Tax=Methylocystis rosea RepID=UPI00035D1D5A
Uncharacterized protein {ECO:0000313|EMBL:KJC62052.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
SCN18_25_8_15_R2_B_scaffold_1467_13
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10331..11731)
DNA (1401bp) protein (467aa)
Protease HtpX homolog n=1 Tax=Oceanicaulis sp. HTCC2633 RepID=A3UC95_9RHOB
Heat shock protein HtpX {ECO:0000313|EMBL:GAM99489.1}; TaxID=1605283 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium U9-1i.;"
peptidase M48 Ste24p
SCN18_25_8_15_R2_B_scaffold_1467_14
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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12440..13477
DNA (1038bp) protein (346aa)
hypothetical protein n=1 Tax=candidate division OP9 bacterium OP9-cSCG RepID=UPI000360E07A
Uncharacterized protein {ECO:0000313|EMBL:KIL49421.1}; TaxID=889306 species="Bacteria; Firmicutes; Bacilli; Bacillales; Planococcaceae; Jeotgalibacillus.;" source="Jeotgalibacillus soli Cunha et al. 2012.;"
alcohol dehydrogenase GroES domain-containing protein
SCN18_25_8_15_R2_B_scaffold_1467_15
SCNPILOT_CONT_1000_BF_Mesorhizobium_65_39, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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13568..14920
DNA (1353bp) protein (451aa)
hypothetical protein n=1 Tax=Atribacteria bacterium SCGC AAA252-M02 RepID=UPI0003818060
Uncharacterized protein {ECO:0000313|EMBL:KIL35090.1}; TaxID=1590652 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Cohnella.;" source="Cohnella sp. VKM B-2846.;"
family 1 extracellular solute-binding protein
SCN18_25_8_15_R2_B_scaffold_1467_16
SCNPILOT_CONT_1000_BF_Mesorhizobium_65_39, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15026..15964
DNA (939bp) protein (313aa)
ABC transporter permease protein n=1 Tax=Octadecabacter antarcticus 307 RepID=M9R7A6_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:KIL49423.1}; TaxID=889306 species="Bacteria; Firmicutes; Bacilli; Bacillales; Planococcaceae; Jeotgalibacillus.;" source="Jeotgalibacillus soli Cunha et al. 2012.;"
ABC transporter permease protein
SCN18_25_8_15_R2_B_scaffold_1467_17
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15961..16824
DNA (864bp) protein (288aa)
Uncharacterized protein {ECO:0000313|EMBL:KIL35088.1}; TaxID=1590652 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Cohnella.;" source="Cohnella sp. VKM B-2846.;"
binding-protein-dependent transport system inner membrane protein; K02026 multiple sugar transport system permease protein id=24453332 bin=RBG_19FT_COMBO_GAL15_69_19 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
putative ABC-type sugar transport system, permease component
SCN18_25_8_15_R2_B_scaffold_1467_18
Microbacterium testaceum_SCNpilot_P_inoc_Microbacterium_70_36, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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16821..18071
DNA (1251bp) protein (417aa)
ABC transporter related protein n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F2R9_CONWI
ABC transporter
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
SCN18_25_8_15_R2_B_scaffold_1467_19
CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, Acidobacteria

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18151..18990
DNA (840bp) protein (280aa)
sugar phosphate isomerase n=1 Tax=Arthrobacter sp. M2012083 RepID=UPI00030A49A9
sugar phosphate isomerase/epimerase
Putative sugar phosphate isomerase/epimerase {ECO:0000313|EMBL:ABM08749.1}; TaxID=290340 species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Arthrobacter.;" source="Arthrobacter aurescens (strain TC1).;"
SCN18_25_8_15_R2_B_scaffold_1467_20
Dyadobacter fermentans_SCNpilot_P_inoc_Dyadobacter_48_40, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

18987..19853
DNA (867bp) protein (289aa)
Uncharacterized protein n=4 Tax=Clostridium bolteae RepID=A8S4J7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EDP12774.1}; TaxID=411902 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium bolteae (strain ATCC BAA-613 / WAL 16351).;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1467_21
Rhodanobacter denitrificans_SCNPILOT_SOLID_1_TRIM150_Rhodanobacter_69_165, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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19930..20970
DNA (1041bp) protein (347aa)
Uncharacterized protein n=1 Tax=Asticcacaulis benevestitus DSM 16100 = ATCC BAA-896 RepID=V4P620_9CAUL
Genome assembly strain_NMP_1 {ECO:0000313|EMBL:CEP69529.1}; TaxID=55779 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Moorella group; Moorella.;" source="Moorella glycerini.;"
LacI family transcriptional regulator
SCN18_25_8_15_R2_B_scaffold_1467_22
SCNPILOT_CONT_1000_P_Pseudonocardia_72_23, SCNPILOT_CONT_1000_P_Pseudonocardia_72_23, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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20979..21287
DNA (309bp) protein (103aa)
Antibiotic biosynthesis monooxygenase n=1 Tax=Pelobacter propionicus (strain DSM 2379) RepID=A1AKS5_PELPD
Uncharacterized protein {ECO:0000313|EMBL:KJY28542.1}; TaxID=68223 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces katrae.;"
antibiotic biosynthesis monooxygenase
Displaying 22 items

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